#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 12, 2024; 16:06 GMT TreeBASE (cc) 1994-2008 Study reference: Perez K.E., & Cunningham C. 2011. Evolution in Niche and Morphology in Mexican Land Snails. Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S11878] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=48; TAXLABELS Daedalochila_hippocrepis Lobosculum_pustula Millerelix_mooreana Polygyra_cereolus Polygyra_septemvolva Praticolella_berlandieriana_B1 Praticolella_berlandieriana_M1_ESU3 Praticolella_berlandieriana_N1 Praticolella_berlandieriana_N2 Praticolella_berlandieriana_V1_ESU2 Praticolella_berlandieriana_V2_ESU2 Praticolella_berlandieriana_V3_ESU2 Praticolella_candida_candida_S1 Praticolella_candida_candida_S2 Praticolella_candida_candida_S3 Praticolella_candida_candidaS4 Praticolella_flavescens_O1 Praticolella_flavescens_O2 Praticolella_flavescens_P1 Praticolella_flavescens_P2 Praticolella_flavescens_T Praticolella_griseola_C1 Praticolella_griseola_C2 Praticolella_griseola_H2_ESU6 Praticolella_griseola_berlandieriana_J1 Praticolella_jejuna Praticolella_mexicana_ESU4JX Praticolella_pachyloma_K1_ESU1 Praticolella_pachyloma_K2_ESU1 Praticolella_pachyloma_K3_ESU1 Praticolella_pachyloma_K4_ESU1 Praticolella_pachyloma_SP.C1 Praticolella_pachyloma_SP.C2 Praticolella_pachyloma_candida_T_banded Praticolella_pachyloma_candida_T_unbanded Praticolella_pachyloma_pachyloma_R1 Praticolella_pachyloma_pachyloma_R2 Praticolella_pachyloma_pachyloma_R3 Praticolella_pachyloma_pachyloma_R4 Praticolella_pachyloma_taeniata_S1 Praticolella_pachyloma_taeniata_S2 Praticolella_pachyloma_taeniata_S3 Praticolella_pachyloma_taeniata_W1 Praticolella_sp._T_ESU5 Praticollela_trimatris_R1 Praticollela_trimatris_R2 Praticollela_trimatris_R3 Triodopsis_vannostrandi ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M10238] TITLE all_H3_names_KEP; LINK TAXA = Taxa; DIMENSIONS NCHAR=358; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Daedalochila_hippocrepis ?GCAT{AG}AT?GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAAGAGCCCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCCGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCAATCTCTCGCACCAGGCGCTGGAAGGGCAGCTT{AG}CGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTA?CGATGGGGCTTCTTGACACCGCCGGTGGCCGGGGCCGACTTCCTGGCGGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGCCGTCTGCTTGG??? Lobosculum_pustula GGCATAATAGTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAAGAGTCCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGC{GT}GAGCTCTGGAAACGCAGGTCGGTCTTGTAGTC{CT}TGGGCGATTTCTCGCACCAGGCGCTGGAA{GT}GGCAGCTTGCGGATCAGCAGCTCGGT{AG}CTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACAGTGCCGGGCCTGTACCGATGGGGTTTCTTGACACCTCCGGTGGCCGGGGCCGACTTCCTGGCCGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGG??? Millerelix_mooreana GGCATAATAGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAAGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTCACCAGGCGCTGGAAGGGCAGCTTGCGGATCAACAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCCGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTGCGGGCCGTCTGCTTGG??? Polygyra_cereolus ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CAGGTCCGTCTTGAAGTCCTGGGCGATCTCTCGGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGTCGGTAGCGATGCGGCTTCTTGACCCCGCCGGTGGCCGGGGCCGACTTCCGGGCCGCCTTGGTGGCCAGCTGCTTGCGGGGGGCCTTGCCTCCGGTCGATTTGCGGGC?GTCTGCTTGG??? Polygyra_septemvolva GGCAT{AT}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCTTCCTGCAGGGCCATCACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGGGCGATCTCTCGGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGTCGGTAGCGATGCGGCTTCTTG???????????????????????????????????????????????????????????????????????????????????????????????????? Praticolella_berlandieriana_B1 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAAACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACTGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_berlandieriana_M1_ESU3 GGCATAATAGTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCT{CG}ACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGCCGTCTGCTTGGTAC Praticolella_berlandieriana_N1 ????????????????GCTTTGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_berlandieriana_N2 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACA{AG}ACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCAC{GT}GTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_berlandieriana_V1_ESU2 GGCATAATAGTGACACGCTTGGCGTGGATGGCGCACA{AG}GTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTCACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCC{AG}GTGGC{AT}GGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_berlandieriana_V2_ESU2 GGCATAATAGTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTCACCAGACGCTGGAAGGGCAGCTTGCGAATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATTTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_berlandieriana_V3_ESU2 GGCATAAT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACA{AG}ACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCAC{GT}GTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_candida_candida_S1 ?GCATAATAGTGACACGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_candida_candida_S2 ?GCATAATAGTGACACGCTTGGCGTGGATGGCGCACA{AG}GTTGGTGTC{CT}TCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGAC{GT}GCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCT{CG}ACCAGGCGCTGGAAGGGCAGCTTGCG{AG}ATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_candida_candida_S3 GGCATAATAGTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCT{CG}ACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_candida_candidaS4 GGCATAATAGTGACACGCTTGGCGTGGATGGCGCACA{AG}GTTGGTGTCTTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGAC{CG}GCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_flavescens_O1 ?GCATAATAGTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTCACCAGACGCTGGAAGGGCAGCTTGCGAATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTG???? Praticolella_flavescens_O2 ??CATAAT{AG}GTGACACGCTTGGCGTGGATGGCGCACA{AG}GTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCT{CG}ACCAG{AG}CGCTGGAAGGGCAGCTTGCG{AG}ATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_flavescens_P1 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACA{AG}GTTGGTGTC{CT}T?GAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCT{CG}ACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGC?GACTTCCTGGCTGCC???????????????????????????????????????????????????????????????? Praticolella_flavescens_P2 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGC?GACTTCCTGGCTGCCTTGGTGGCCAGCTGCTG??????????????????????????????????????????????? Praticolella_flavescens_T GGCATAAT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCTTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGCCGTCTGCTT????? Praticolella_griseola_C1 GGCAT{AG}AT{AG}GTGAC{AG}CGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCAC{GT}AGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTT???GACAC?T?CGGTGG??????????????????????????????????????????????????????????????????????????????????????? Praticolella_griseola_C2 GGCAT?AT{AG}GTGAC{AG}CGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCT{CG}?CCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGG?TCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTG?CACCTCCGG?GGC?????????????????????????????????????????????????????????????????????????????????????? Praticolella_griseola_H2_ESU6 GGCAT{AG}A?{AG}G?GACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTT?????????????????????????????????????????????????????????????? Praticolella_griseola_berlandieriana_J1 ??????????????????????????????????????????????????GAACAAACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTTTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCT?TT?TGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGCTTTCTTGAC?????????????????????????????????????????????????????????????????????????????????????????????????? Praticolella_jejuna GGCAT{AG}AT{AG}G{AC}GACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGGCCCACCAGGTAGGCCTCGCAGGCCTCTTGCAGGGCCATGACGGCCGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTCACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCTGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGTCGGTAGCGATGGGGCTTCTTCACACCTCCGGTGGCCGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTCGATTTGCGGGCGGTCTGCTTGG??? Praticolella_mexicana_ESU4JX GGCATAATAGTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCTTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGC{AT}GGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_pachyloma_K1_ESU1 GGCATAAT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAAACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACTGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC{ACG}GTCTGCTTGGTAC Praticolella_pachyloma_K2_ESU1 GGCATAAT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAAACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACTGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_pachyloma_K3_ESU1 GGCATAATAGTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAAACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCT{CG}ACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCAC{AC}GTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGC{AT}GGGGC{CT}GACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTG???? Praticolella_pachyloma_K4_ESU1 GGCAT{AG}ATAGTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTCACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTTGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCG??????????????????????????????????????????????????????????????????????????????????????????? Praticolella_pachyloma_SP.C1 GGCAT{AG}A?{AG}GTGACACGCTTGGCGTGGATGGCGCACAAGTTGGTGTCTTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCT?ACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTG?AGCGATGGGGTTTCTTG?C?C?TCCGGTGGCAGGG?????????????????????????????????????????????????????????????????????????????????? Praticolella_pachyloma_SP.C2 GGCATAATAGTGACACGCTTGGCGTGGATGGCGCACAAGTTGGTGTCTTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGG??? Praticolella_pachyloma_candida_T_banded GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCAC{AC}AGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATTTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGC{AT}GGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGACCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_pachyloma_candida_T_unbanded GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACAAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATTTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCTGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_pachyloma_pachyloma_R1 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCT{CG}ACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_pachyloma_pachyloma_R2 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACC{CT}ACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTCACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTA{AG}ATTT???????????????????? Praticolella_pachyloma_pachyloma_R3 GGCATAAT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCAC{GT}AGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTCACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGC{CT}GACTTCCTGGCTGCCTTGGTGGCCAACTGCTTGCGGGGAGC{CT}TTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTA? Praticolella_pachyloma_pachyloma_R4 ?????????GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC{CG}GTCTGCTTGGTAC Praticolella_pachyloma_taeniata_S1 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTCACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAACTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCCGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticolella_pachyloma_taeniata_S2 ??????????????????????????????????????????????????????????????????????CCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTCACCA?A?GCTGGAAGGGCAGCTTGCGAATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC{CT}GTCTGCTTGGTAC Praticolella_pachyloma_taeniata_S3 ?????????????????????????????????????????????????????????????????GTAGGCTTCGCTGGCCTCTTGCA?GGCCATGACGG?GGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCA?CA?CTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGTGGTTTCTTGACACCCCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGG?C{CT}GTCTGCTTGG??? Praticolella_pachyloma_taeniata_W1 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCAC{GT}AGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATTTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCTGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGCCGTCTGCTTGGTAC Praticolella_sp._T_ESU5 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGG??????????????? Praticollela_trimatris_R1 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACCCACCAGGTA{AG}GCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticollela_trimatris_R2 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAAACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTGACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACTGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCTGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Praticollela_trimatris_R3 GGCAT{AG}AT{AG}GTGACACGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGACC{CT}ACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCGGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATCTCTCTCACCAGGCGCTGGAAGGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGCCGGATCTCTCGCAGGGCCACGGTGCCGGGCCTGTAGCGATGGGGTTTCTTGACACCTCCGGTGGCAGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCGGTAGATTTACGGGC?GTCTGCTTGGTAC Triodopsis_vannostrandi GGCAT{AG}AT{AG}GTGACTCGCTTGGCGTGGATGGCGCACAAATTGGAGTCCTCGAAGAGACCCACCAGGTAGGCCTCGCTGGCCTCTTGCAGGGCCATGACGGCCGAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCTGGGCGATTTCTCTCACCAGGCGCTGGAAAGGCAGCTTGCGGATCAGCAGCTCGGTGCTCTTCTGGTAACGACGGATTTCTCGCAGGGCCACGGTGCCGGGCCTGTA{AG}CGATGGGGCTTCTTGACACC{CG}CCGGTGGCTGGGGCCGACTTCCTGGCTGCCTTGGTGGCCAGCTGCTTGCGGGGAGCCTTGCCTCCTGTGGATTTACGGGC?GTCTGCTTGG??? ; END; BEGIN CODONS; CODONPOSSET * UNTITLED (CHARACTERS = all_H3_names_KEP) = 1: 3-357\3, 2: 1-358\3, 3: 2-356\3; CODONPOSSET CodonPositions (CHARACTERS = all_H3_names_KEP) = 1: 3-357\3, 2: 1-358\3, 3: 2-356\3; END;