@ARTICLE{TreeBASE2Ref20000,
author = {Joanne R Chapman and Robert K Taylor and Bevan S Weir and Megan K Romberg and Joel L Vanneste and Brett J.R. Alexander},
title = {Phylogenetic relationships among global populations of Pseudomonas syringae pv. actinidiae},
year = {2012},
keywords = {},
doi = {10.1094/PHYTO-03-12-0064-R},
url = {http://dx.doi.org/10.1094/PHYTO-03-12-0064-R},
pmid = {22877312},
journal = {Phytopathology},
volume = {102},
number = {11},
pages = {1034?1044},
abstract = {Pseudomonas syringae pv. actinidiae, the causal agent of canker in kiwifruit (Actinidia spp.) vines, was first detected in Japan in 1984, followed by detections in Korea and Italy in the early 1990s. Isolates causing more severe disease symptoms have recently been detected in several countries with a wide global distribution, including Italy, New Zealand, and China. In order to characterize P. syringae pv. actinidiae populations globally, a representative set of 40 isolates from New Zealand, Italy, Japan, South Korea, Australia, and Chile were selected for extensive genetic analysis. Multilocus sequence analysis (MLSA) of housekeeping, type III effector and phytotoxin genes was used to elucidate the phylogenetic relationships between P. syringae pv. actinidiae isolates worldwide. Four additional isolates, including one from China, for which shotgun sequence of the whole genome was available, were included in phylogenetic analyses. It is shown that at least four P. syringae pv. actinidiae MLSA groups are present globally, and that marker sets with differing evolutionary trajectories (conserved housekeeping and rapidly evolving effector genes) readily differentiate all four groups. The MLSA group designated here as Psa3 is the strain causing secondary symptoms such as formation of cankers, production of exudates, and cane and shoot dieback on some kiwifruit orchards in Italy and New Zealand. It is shown that isolates from Chile also belong to this MLSA group. MLSA group Psa4, detected in isolates collected in New Zealand and Australia, has not been previously described. P. syringae pv. actinidiae has an extensive global distribution yet the isolates causing widespread losses to the kiwifruit industry can all be traced to a single MLSA group, Psa3.}
}
Matrix 10332 of Study 11869
Citation title:
"Phylogenetic relationships among global populations of Pseudomonas syringae pv. actinidiae".
Study name:
"Phylogenetic relationships among global populations of Pseudomonas syringae pv. actinidiae".
This study is part of submission 11869
(Status: Published).
Matrices
Title: Character Matrix
Description: Concatenation of seven genes
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Pseudomonas syringae pv. actinidiae T10_04758 New Zealand |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae T10_05188 New Zealand |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae I.6.5.10.4-4 Italy |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae MAFF 302145 Japan |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae T10_04782 New Zealand |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae T10_05195 New Zealand |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae MAFF 302091 Japan |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae T10_05163 New Zealand |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae T10_05454 New Zealand |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae T10_04976 New Zealand |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae T10_06115 New Zealand |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae T11_0918 New Zealand |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae T10_05196 New Zealand |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae I.27.4.10.D1 Italy |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae KACC 10584 South Korea |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae MAFF 302143 Japan |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae ICMP 9855 Japan |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae KACC 10754 South Korea |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Pseudomonas syringae pv. actinidiae KACC 10594 South Korea |
(none)
|
GCCATGCTGAAAATGGCCCGTGACGGCATC |
Columns
None of the columns has a description.