#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 19, 2024; 4:12 GMT TreeBASE (cc) 1994-2008 Study reference: Orr R.J., Murray S.A., Stuken A., Rhodes L., & Jakobsen K.S. 2012. When Naked became Armored: An Eight-Gene Phylogeny Reveals Monophyletic Origin of Theca in Dinoflagellates. PLoS ONE, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S12493] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=74; TAXLABELS Adenoides_eludens Akashiwo_sanguinea Alexandrium_affine Alexandrium_fundyense Alexandrium_minutum Amoebophrya_sp_ex_Akashiwo_sanguineaum Amoebophrya_sp_ex_Gymnodinium_instriatum Amphidinium_carterae Amphidinium_massartii Azadinium_obesum Azadinium_spinosum Brachidinium_capitatum Ceratium_furca Ceratium_longipes Ceratocorys_horrida Crypthecodinium_cohnii Cryptosporidium_parvum Dinophysis_acuminata Dinophysis_caudata Duboscquodinium_collinii Eimeria_tenella Ensiculifera_aff_loeblichii Gambierdiscus_australes Gonyaulax_spinifera Gymnodinium_aureolum Gymnodinium_beii Gymnodinium_catenatum Gyrodiniellum_shiwhaense Gyrodinium_dominans Hematodinium_perezi Heterocapsa_pygmaea Heterocapsa_triquetra Karenia_brevis Karenia_mikimotoi Karlodinium_veneficum Kryptoperidinium_foliaceum Lepidodinium_chlorophorum Lepidodinium_viride Lingulodinium_polyedrum Luciella_masanensis Noctiluca_scintillans Ornithocercus_magnificus Ornithocercus_quadratus Oxyrrhis_marina Pentapharsodinium_dalei Pentapharsodinium_tyrrhenicum Peridiniopsis_niei Peridiniopsis_penardii Peridinium_cinctum Peridinium_willei Perkinsus_marinus Pfiesteria_piscicida Phalacroma_cf_rotundatum Phalacroma_rapa Polarella_glacialis Prorocentrum_donghaiense Prorocentrum_lima Prorocentrum_micans Prorocentrum_minimum Protoceratium_reticulatum Protodinium_simplex Pseudopfiesteria_shumwayae Pyrodinium_bahamense Scrippsiella_sweeneyae Scrippsiella_trochoidea Stoeckeria_algicida Symbiodinium_microadriaticum Symbiodinium_sp_C3 Takayama_cf_pulchellum Thecadinium_kofoidii Thoracosphaera_heimii Tintinnophagus_acutus Toxoplasma_gondii Woloszynskia_halophila ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14213] TITLE S5_58s; LINK TAXA = Taxa; DIMENSIONS NCHAR=186; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 ] [ . . . . . . . . . . . . . . . . . . ] Adenoides_eludens ACAACTTTCAGTGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGACTTGAACGTATACTGCACT------------TTTGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCGGTG-TCTATTC Akashiwo_sanguinea ACAACTTTCAGCAATGGATACCTCGGCTCGGACACCGATGAA-GGGCGCAG-CGAACTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAACAGAATCTTGAACGTATACTGTGCT------------CTCGGGATAT-G--CCT--GAGAGCATGC-CTGCTTCAGTG-TCTCTT- Alexandrium_affine AATATGTTTTGCAAAGAATGTCTTAGCTCAATAGATGATGAA-GAATGCAG-CAAAATGC-AATAT-GCATTGT-GAATTGCAGA-ATTCCGTGAGCCAATTGATGTTTGAATGTTACTTGCACC------------TTCGGGATAT-G--CTT--GAAGGTTTGC-TTGATTCAATG-CCAATA- Alexandrium_fundyense ATTATGTTTTGCAAAGAATGTTTTAGTTCAATAAATGATGAA-GAATGCAG-CAAAATGC-ATTAT-GCATTGT-GAATTGCAGA-ATTCCGTGAGCTAACAGATGTTTGAATGTTACTTGTGCC------------TTTGGGATAT-T--CTT--GAAGGTTTGC-TTGATTCAATG-CCAATTA Alexandrium_minutum ATGTGTTTTTGCAATGAATGTCTTAGCTCAATTGATGATGAA-GAATGCAG-CAAAATGT-GATAT-GCATTGT-GAATTGCAGA-ATTCCGTGAGCCAATAGATGTTTGAACGTAATTTGCACC------------TTCGGGATAT-G--CTT--GAAGGTGTGC-TTGATTCAATG-TCAATT- Amoebophrya_sp_ex_Akashiwo_sanguineaum -CAACTTTTAGCGATGGATGTCTCGGCTCGAACAACGATGAA-GGACGCCG-CAAAATGC-GATAA-GCGTTGT-GAATGGCAGA-ATTCCGCGAATCAAAAGAAAGCTGAACGCATACTGCACT------------TTCGGGATCC-C--CCT--GAGAGTATGC-TTGGTTCAGGA-CGTTT-- Amoebophrya_sp_ex_Gymnodinium_instriatum ACAACTTTTAGCGGTGGATGTCTCGGCTCAGGCAACGATGAA-GGACGCCG-CAAAATGC-GATAA-GCTTTGT-GAATGGCAGA-ATTCCGCGAATCAATAGAATGCTGAACGCATACTGCACT------------TTTAGGTTAC-T--CCT--GAAAGTATGT-CTAAGTCAGGG-CGTT--- Amphidinium_carterae ATAACTTCCAGCAGTGGATCTCTAGGCTCAAGTGCTGAGGAA-GGG{AT}GCAG-CAAAGTGT-GATAA-GCATTGT-GATGTGCGAG-ATCCTGTGAACCATTAGACTCCCGATCGCACTCTGTACT------------TCTAGGAT-C-T--CCT--GGAAGTAATC-CAGCTTCAGGG-TCATGTA Amphidinium_massartii -TAACTTCCAGCAGTGGATCTCTTGGCTCAAGTGCTGAGGAA-GGGTGCAG-CAAAGTGT-GATAA-GCATTGT-GATGTGCGAG-ATCCTGTGAACCATTAGACTCCCGAGCGCACTCTGCACT------------TTCAGGAT-C-C--CCT--GAAAGTAATC-CAGCTCCAGGG-TCATGG- Azadinium_obesum ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-ACATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGATTTGAACGTATACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-CCTCTAC Azadinium_spinosum ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-ACATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGATTTGAACGTATACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-CCTCTAC Brachidinium_capitatum ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGATTTGAACGTATACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCAAGAT Ceratium_furca ACAAATTTCAGCAACAGATGTCTTGGTTCACATGTTGATGAA-GGGTGCAG-CGAAGTGC-AATAA-TCATTGT-GAATTGCAGA-ATTCCGTGAATCAATTGACCATTGAACGCAGA-AGTGCC------------CTTGGGGCAT-T--CCT--GAGGGCATGC-TTGTGTCAGTG-TTTAATA Ceratium_longipes ----ATTTCAGCAACAGATGTCTTGGTTCACATGTTGATGAA-GGGTGCAG-CGAAGTGC-AGTAA-TCATTGT-GAATTGCAGA-ATTCCGTGAATCAATTGACCATTGAACGCAGA-AGTGCC------------CTTGGGGCAT-T--CCT--GAGGGCATGC-TTGTGTCAGTG-TTTTC-- Ceratocorys_horrida AACACCTTCAGTGATGGATGCTTTGGTTCAAACAATGATGAA-GGGTGCAG-TGAAATGT-ATTAG-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATGGTGCATTGAACATATACTATGTT------------TTCAGGATAT-T--CCT--GCAAGCATGC-TTGAATCAGTG-CCATG-- Crypthecodinium_cohnii ACAACTTTCAGCAGTTGATTCCTTGGTTCAGACCTCGATGAA-GGGCACTG-CGAAATGT-GAATG-GCATTGT-GAATTGCAGG-CATCCGGGAATTGAGAGCTTCTTGAATGCATACTGCTCCAGCTGACTTGTCAGTTGGATAATCTTCCTCAGGGACTATGTACTCCCTCGATG-CTTCATC Cryptosporidium_parvum -ACACTTTAAGTAATGGATGTCTTGGTTCTCATAACGATGAA-GGACGCAG-CAAAGTGC-GATAA-GCAATGT-GAACTGCATA-ATTCTATGAACAATCAGATCTCTCAACGCAAATAGCA-------------------GTAAT-T--TAC--ATTACTATAT-TTATATCAGTG-TCTATTA Dinophysis_acuminata ACAATTTTCAGCGATGGATGCCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-TCTTTGT-GAATTGCAGA-ATTCCGTGAATCAATAGAGCTTTGAACGTGTCTTGCGCT------------TTCGGGCTAT-A--CCT--GAAAGCATGC-CTGCGTTGGTG-------- Dinophysis_caudata -CAATTTTCAGCGATGGATGCCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-TCTTTGT-GAATTGCAGA-ATTCCGTGAATCAATAGAGCTTTGAACGTGTTTTGCGCT------------TTCGGGCTAT-A--CCT--GAAAGCATGC-CTGCGTTGGTG-TCTG--- Duboscquodinium_collinii ACAACTTTCAGCGATCGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGG-ATTCCGTGAACCAATGGGGACTTGAACGTACACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTGTCCACTTC Eimeria_tenella -AAACTTTCAGCAATGGATGTCTTGGCTCACGCATCGATGAA-GGACGCAG-CGAAATGC-GATAC-GCATTGT-GAATTGCAGA-TTTCAGTGAACCATCAGATTTCTGAACGCACATGGCGCT------------GCTGGTATTT-T--GCC--CGCAGCACGT-CTGTTTCAGTG-TCTCT-- Ensiculifera_aff_loeblichii ACAACTTTCAGCGATGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCA{AT}TGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGACTTGAACGTACACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTACTTCAGTG-TCTA--- Gambierdiscus_australes AACTTTCAACG-AATGAATGTCTCGGCTCGAGCAACGATGAACGGGCGCAGTCGAAGTGTTGATTGAGCAATGT-GAATTGCAGATTTCCCGTGAACCAATAGGGATTTGAACGTATGCTGTACT------------TTTGGAATAG-C--CCT--GAGAGTATGC-CTCCTTCAGTTGTCAAATG Gonyaulax_spinifera ACTTTTTTCAGGTGTGGATGCCTTAGCTCAAACGTTGATGAA-GGGTGTAG-TGAAATGC-GAAAT-GCAATGT-GACATGCAAA-ACCCCGTGAACCAATTGGTTGTTGAATGTTGCCTTTGCT------------TTCAAGTACT-T--CCT--GGAAGCATGT-CCTCTTCATTG-ATGT--- Gymnodinium_aureolum ACAACTTTCAGCGATGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGC-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCGACAGGAACTTGAACGCATATTGTGCT------------TTTGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-T------ Gymnodinium_beii ACAACTTTCAGCGACGGATATCTCGGCTCAAGCACCGATGAA-GGGCGCAG-CGAAGTGT-GATAA-TCATTGT-GAATTGCAGA-ATTCCGTGAACCAATGGATCTTTGAACGTGCATTGCACT------------CTGGGGATAT-C--CCT--GGGAGTATGC-CTGCTTCAGTG-CTTGTGG Gymnodinium_catenatum ACAACTTTCAGCGACGGATGTCTCGGTTCGAACAACGATGAA-GGGCGCAG-CGAAGTGC-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCGACAGAAACTTGAACGCATATTGTGCT------------TTTGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTATGT Gyrodiniellum_shiwhaense ACAACTTTCAGCGATGGATATCTCGGTTCGATCAACGATGAA-GGGCGCAG-CGAAGTGC-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCGACAGGGACTTGAACGCATATTGTGCT------------TTTGGGATAT-C--CCC--GAAAGCATGC-CTGCTTCAGTG-TCTATGC Gyrodinium_dominans ACAACTTTCAGCGACGGATGTCTCGGCTCAAACAACGATGAA-GGGCGCAG-CGAAGTGC-GATAA-GCATTGC-GACTTGCAGA-ATTCCGTGAACCAACAGATTCCTGAACGTATACTGCGCT------------TTCGGGATAC-C--CCT--GAAAGCATGC-CTACTTCAGTGTCATC--- Hematodinium_perezi ------------------------------GGTTACGATGAA-GGACGCAG-CGAATTGC-GATAA-GCAATGC-GAATTGCAGA-ATTCCGTGAATCATCAGATTTTTGAACGTACTCTACGCT------------CTCGGG-TAT-C--CCT--GGGAGCATGTCTGGTCTCAGCGTCTGTTCA Heterocapsa_pygmaea ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGATTTGAACGTACACTGCGCT------------TTCGGGACAT-C--CCT--GAAAGCATGC-TTGCTTCAGTG-TCTACTC Heterocapsa_triquetra -------TCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGATTTGAACGTACACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTACTC Karenia_brevis ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGATTTGAACGTATACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TC----- Karenia_mikimotoi ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGATTTGAACGTATACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCAATAT Karlodinium_veneficum ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGATTTGAACGTATACTGCGCT------------TTCGGGTTAT-T--CCT--GAAAGCATGC-CTTCTTCAGTG-TCTAC-- Kryptoperidinium_foliaceum AACACTTTCAGCGATGGATACCTTGGCTCGAACAACAATGAA-GGGTGCAG-CGAAGTGC-GAGAA-GCATTGT-GAATTGCAGA-ATTCCGTGAGCCAATTGAAAACTGAATGTATATTGCGCT------------TTCGGGAAAT-G--CCT--GAGAGCATGC-CTACTTCAGCG-TCCATT- Lepidodinium_chlorophorum ACAACTTTCAGCGATGGATGTCTCGGTTCGATCAACGATGAA-GGGCGCAG-CGAAGTGC-GATAA-GCATTGT-GAATTGCAGA-TTTCCGTGAACCGACAGGGACTTGAACGCATATTGTGCT------------TTTGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTACGC Lepidodinium_viride ACAACTTTCAGCGATGGATGTCTCGGTTCGATCAACGATGAA-GGGCGCAG-CGAAGTGC-GATAA-GCATTGT-GAATTGCAGA-TTTCCGTGAACCGACAGGGACTTGAACGCATATTGTGCT------------TTTGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTACG- Lingulodinium_polyedrum GTGTTATTCAGTAATGGATGCCTTGGTCTGAAAATCGATGAA-GAGTACAG-CGAAATGT-GATAT-GCATTGT-GAACTGCAGA-CTTCCGTGAGTCAATGGCTTGTTGAACGTTTGCTGTGCC------------TTTGGGATAC-G--CCT--GAAGGCGCGC-CTGCTTCAGCG-TCTGTTC Luciella_masanensis ACAACTTTCAGCGACGAATGTCTCGGCTCGAACAACGATGAA-GGGCACAG-CGAACTGT-GATAA-GCATTGT-GAATTGCAGA-TTTCCGCGAATCAATAGAAACTTGAACGTAAAATGCGGT------------TTCGGGATAT-C--CCT--GAAACCATGC-CTGCTTCAGTGTCCCAACC Noctiluca_scintillans ATAACTTCCAGTGATGGATGTCTCGGCTCGAACAACGATGAA-GGGTGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGG-ATTCAGTGAACCAACAGAAAGTTGAACGCATATTGCTCT------------TTCGGGTTAT-T--CCT--GAAAGCATGT-TTACTTCAGTG-TCTTTT- Ornithocercus_magnificus -CAACTTTCAGCGATGGATGTCTCGGCTCGGACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-CCTTTGT-GAATTGCAGA-ATTCCGTGAATCAATAGAGCTTTGAACGTGTTTTGTGCT------------TTTGGGATAT-A--CCT--GAAAGCATGC-CTGCTTTGGTG-TCTA--- Ornithocercus_quadratus -CAACTTTCACCGATGGAGGTCTCGGCTCGGACAACAATAAA-AGGGGCAC-CGAAATGT-GATAA-CCTTTGT-GAATTGCAAA-AATCCCTGAATCAATAAAGCTTTTAACGTGTTTTGTGCT------------TTTGGGATAT-A--CCC--GAAAGCATGC-CCGCTTTGGGG-TCTA--- Oxyrrhis_marina GAAAAGCGCAGCGACGAATTTCTAGAATCAATAATCGAAGAC-GAGCGCAG-CAAATTGC-GAAAA-GCAAAAC-GATATGCTGA-TGATCGAGATGTTCAGGCAATTCTAATACAGGAAGTGGGACAG--------TTGTGTCTCGTCTTTGTTGCAGGGTAT-C---GGAACATGT--GTTTAT Pentapharsodinium_dalei ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCACA-ATTCCGTGAACCAATAGGGACTTGAACGTACACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTATTC Pentapharsodinium_tyrrhenicum ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGACTTGAACGTACACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTATTC Peridiniopsis_niei ACAACTTTCAGCGACGGATATCTCGGCTCAAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-TTTCCGTGAGCCAATAGAAACCTGAACGCATCCTGCGCT------------TTCGGGATAT-T--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTACTT Peridiniopsis_penardii ACAACTTTCAGCGACGGATATCTCGGCTCAAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-TTTCCGTGAGCCAATAGAAACCTGAACGCATCCTGCGCT------------TTCGGGATAT-T--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTACTT Peridinium_cinctum ACCACATTCAGTGACGGATGTCTTGGCTCGAGCAGCGATGAA-GGGCGCAG-CGAACTGC-GATAC-GCATTGT-GAATTGCAGA-ATTCTGTGAATCAATAGAGACTTGAATGCGCACTGCGTT------------TTTGGGACAT-C--CCT--AAAAGCAGGC-CTGCTTCAGTG-TCCGTGC Peridinium_willei ACCACATTCAGCAATGGATGTCTTGGCTTGAGCAATGATGAA-GGGCGCAG-CGAACTGC-GATAC-GCACTGT-GAATTGCAAA-ATTCCGTGAGTCAATAGAGACTTGAACGTGCAGTGTGCT------------TCTGGGATAT-T--CCT--GAAAGTATGC-CTGCTTCAGTG-TCTGTT- Perkinsus_marinus --AACTCTCAACGATGGATGCCTCGGCTCGAGAATCGATGAA-GGACGCAG-CGAAGTGC-GATAA-GCACTGC-GATTTGCAGA-ATTCCGTGAACCAGTAGAAATCTCAACGCATACTGCACA------------AAGGGGATCT-TT-CCT--CTTTGTACAT-ACATATCAGTG-TCGCTC- Pfiesteria_piscicida ACAACTTTCAGCGATCGATGTCTCGGCTCGAACAACGATGAA-GGGCACAG-CGAACTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAATCAATAGAAACTTGAACGTAAAATGCGGT------------TTCGGGATAT-C--CCT--GAAACCATGC-CTGCTTCAGTG-TCCCA-- Phalacroma_cf_rotundatum -CAACCTTCAGCGATGGATGTCTCGGCTTGGACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-CCTTTGT-GAATTGCAGA-ATTCCGTGAATCAATAGAGCTTTGAACGCGTGTTGTGCT------------GTTGGGATAT-A--CCT--GACAGCATGC-CTGCTTTGGTG-CCTT--- Phalacroma_rapa ----------------------TCGGCTTGGACAACATTGAA-GGGCGCAG-CGAAGTGT-GATAA-CCTTTGT-GAATTGCAGA-ATTCCGTGAATCAATAGAGCATTGAACGCGTGCTGTGCT------------GTTGGGATAT-A--CCT--GACAGCATGC-CTGGTTTGGCG-TCTTCTG Polarella_glacialis ACAACTTTCAGCGACGGATATCTCGGCTCAAGCATCGATGAA-GGGCGCAG-CGAAGTGT-GATAA-TCATTGT-GAATTGCAGA-ATTCCGTGAACCAATGGAAACTTGAACGTGCATTACACT------------CTCGGGATAT-C--CCT--GGGAGTATGC-CTGCTTCAGTG-CTTGTGG Prorocentrum_donghaiense ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACAATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGACTTGAACGTATACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTA--- Prorocentrum_lima ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGACTTGAACGTATACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTATTC Prorocentrum_micans ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGACTTGAACGTATACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTATTC Prorocentrum_minimum ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGACTTGAACGTATACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTATTC Protoceratium_reticulatum ---AGCTTCAGTGATGGATGCTTTGGTTCAAACAACGATGAA-GGGTGCAG-TGAAATGT-ATTAG-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATGGGGCATTGAACGTATTCTATGTT------------TTTGGGACAT-T--CCT--GCAAGCATGC-TTGAATCAGTG-CCATGTC Protodinium_simplex ACAACTTTCAGCGACGGATATCTCGGCTCAAGCATCGATGAA-GGGCGCAG-CGAAGTGT-GATAA-TCATTGT-GAATTGCAGA-ATTCCGTGAACCAATGGATTCTTGAACGTGCATTGCACT------------CTCGGGATAT-C--CCT--GGGAGTATAC-CTGCTTCAGTG-CTTGTGG Pseudopfiesteria_shumwayae ACAACTTTCAGCGATCGATGTCTCGGCTCGAACAACGATGAA-GGGCACAG-CGAACTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAATCAATAGAAACTTGAACGTAAAATGCGGT------------TTCGGGATAT-C--CCT--GAAACCATGC-CTGCTTCAGTG-TCCCA-- Pyrodinium_bahamense ACAAGGTTCAGCGATGGATGTTTCGGCTTAGTTGATGATAAA-GGGCGCAG-CAAAATGT-GATAC-GCATTGT-GAATTGCAGG-ATTCCGTGAACTAATTGGTTTTTGAATGCACGTTGCACC------------TTTGGGATAT-T--CCT--CAAGGTGTGC-TTGATTCAATG-TCTTGC- Scrippsiella_sweeneyae ACAACTTTCAGCGATCGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGG-ATTCCGTGAACCAATAGGGACTTGAACGTACACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCCACTT Scrippsiella_trochoidea ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGACTTGAACGTACACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTATTC Stoeckeria_algicida ACAACTTTCAGCGATTGATGTCTCGGCTCGAACAACGATGAA-GGGCACAG-CGAACTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAATCAATAGAAACTTGAATGTAGACTGTGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCCAA-- Symbiodinium_microadriaticum ACAATTTTCAGCGACGGATATCTTGGCTCGAGCACCTATGAA-GGGCGCAG-CGAAGTGC-GATAA-TCGTTGT-GAATTGCAGA-ACTCCGTGAACCAATGGCCTCTTGAACGTGCATTGCGCT------------CTTGGGATAT-G--CCT--GAGAGCATGT-CTGCTTCAGTG-CTTCTAC Symbiodinium_sp_C3 ACAACTTTCAGCGATGGATATCTTGGCTCGGGCACCTGTGAA-GGGCGCAG-CGAAGCGC-GATAG-TCTTTGT-GAATTGCAGA-ACTCCATGAACCAATGGCCTCCTGAATGTGCGTTGCACT------------CTTGGGAT-T-T--CCT--GAGAGTATGT-CTGCTTCAGTG-CTTAACT Takayama_cf_pulchellum ACAACTTTCAGCGACGGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAGTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATAGGGATTTGAACGTATACTGCGCT------------TTCGGGACAT-T--CCT--GAAAGCATGC-CTGCTTCAGTG-TCTACTG Thecadinium_kofoidii ACAGCTTTCAGTGATGGATGACTTGGCTCAAACAAAGATGAA-GGGTGCAG-CGAAATGC-GATAA-GCATTGT-GAATTGCAGA-ATTCCGTGAACCAATGGGGTTTTGAACGTATACTGCGCT------------TTTGGGATGT-C--CCT--GAAAGCATGC-CTCCTTCAGGG-TCTTCTG Thoracosphaera_heimii -CAACTTTCAGCGATCGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAACTGT-GATAA-GCATTGT-GAATTGCAGA-ATTCCGAGAACCAATAGAACCTTGAACGCAAACTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG-TCC---- Tintinnophagus_acutus -CCATCTTCAGCGATTGATGTCTCGGCTCGAACAACGATGAA-GGGCGCAG-CGAAATGC-GATAC-GCATTGT-GACTTGCAGA-ATTCCGTGAACCAACAGAAACTTGAACGTATATTGCGCT------------TTCGGGATAT-C--CCT--GAAAGCATGC-CTGCTTCAGTG---TCCAT Toxoplasma_gondii -AAATTTTCAGCAATGGATGTCTTGGCTCGCGCAACGATGAA-GGACGCAG-CGAACTGC-GAAAC-GCAATGTGGAATTGCAGA-ATTCAGTGAATCATCAGATTTCTGAACGCA----ATGCA------------CCTGGGATAT-C--TCC--TG--GTACGT-CTGTTTCAGTG-TCTTT-- Woloszynskia_halophila ACAACTTTCAGCGACGGATATCTCGGCTCAAGCACCGATGAA-GGGCGCAG-CGAAGTGT-GATAA-TCATTGT-GAATTGCAGA-ATTCCGTGAACCAATGGATTCTTGAACGTGCATTGCACT------------CTCGGGATAT-C--CCT--GGGAGTATGC-CTGCTTCAGTG-CTTGTGG ; END; BEGIN CODONS; CODONPOSSET * UNTITLED (CHARACTERS = S5_58s) = N: 1-186; CODONPOSSET CodonPositions (CHARACTERS = S5_58s) = N: 1-186; END;