#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 17, 2024; 4:37 GMT TreeBASE (cc) 1994-2008 Study reference: Steppan S., Adkins R., Spinks P., & Hale C. 2005. Multigene phylogeny of the Old World mice, Murinae, reveals distinct geographic lineages and the declining utility of mitochondrial genes compared to nuclear genes. Molecular Phylogenetics and Evolution, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1366] BEGIN TAXA; TITLE AP5_extended_taxon_set; DIMENSIONS NTAX=66; TAXLABELS Aethomys_namaquensis Anisomys_imitator Apodemus_agrarius Apodemus_semotus Apomys_datae Apomys_hylocoetes_147871 Apomys_hylocoetes_148149 Archboldomys_luzonensis Arvicanthis_somalicus Batomys_granti Chrotomys_gonzalesi Conilurus_penicillatis Dacnomys_millardi Gerbillus_gerbillus Hybomys_univattus_SP10553 Hybomys_univattus_SP10599 Hylomyscus_parvus_SP10502 Hylomyscus_parvus_SP10514 Hyomys_goliath Leggadina_forresti Lemniscomys_barbarus_SP5204 Lemniscomys_barbarus_SP5213 Leporillus_conditor Malacomys_longipes_SP10597 Malacomys_longipes_SP10598 Mastacomys_fuscus Mastomys_natalensis_166943 Mastomys_natalensis150104 Maxomys_bartelsii Mesembriomys_gouldii Mus_caroli Mus_musculus Mus_musculus_AF196855 Mus_pahari Mus_spicilegus Niviventer_culteratus Notomys_fuscus Oenomys_hypoxanthus_SP5096 Oenomys_hypoxanthus_SP5097 Parotomys Phloemys_931080 Praomys_jacksoni_SP5001 Praomys_jacksoni_SP5002 Praomys_tullbergi_SP10511 Praomys_tullbergi_SP10523 Pseudomys_australis_35938 Pseudomys_australis_35951 Rattus_exulans Rattus_norvegicus Rattus_norvegicus_AF196852 Rattus_villosissimus Rhynchomys_isarogensis_EAR1840 Rhynchomys_isarogensis_EAR1857 Stochomys_longicaudatus_SP10564 Stochomys_longicaudatus_TK21562 Sundamys_muelleri Taterillus_emini Thallomys_paedulcus_SP5269 Thallomys_paedulcus_SP5270 Uranomys_ruddi_SP11148 Uranomys_ruddi_SP11151 Uromys_caudimaculatus Xeromys_myoides Zelotomys_hildegardeae_SP5147 Zelotomys_hildegardeae_SP5149 Zyzomys_argurus ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1457] TITLE AP5_extended_taxon_set; LINK TAXA = AP5_extended_taxon_set; DIMENSIONS NCHAR=475; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Aethomys_namaquensis --------------CACACAGCCCGGGAAATGGCCAATGCTAAAGAAATTGCCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACCGGAGTGCATGATGCCAATGATAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATAG-----AGGTCACTCCACACT-GGGACCTTCCTCT----GGGGAGGGCAGAAGGCAAGT---CTCCTAC----------CTGTAACTCGGGCATCC-AATGGTTTCCTT-CCATTGGATTCTGATTCGGGGGAAGCAGCTGAGTGGCTGTTGACCCCAGAGGAGGG-----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGA{CT}GTGTTCTCTGACCGTGCCCTCCACAACATCCCCTGGTACGTGCTGGCTGGAAACCATGATCACCTTG-------------- Anisomys_imitator TTAATGCCCCATTCCACACAGCCCGGGAAATGGCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATAGTGGGGAGGTCACTCCAAGAT-GGGACCTTCCTCT----GGGGAGGGCAGAAGG-------ACCTCTAT----------GGGGACCTTGGACTGCC-GATAGTTCCCTT-CCCTTGGTTTGTGATTCGGTGGAAGCAGCAGAGTGGTTGCTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCATGATCACCTTGGCAACGTCTCTGC- Apodemus_agrarius ---------------------CCCGGGAAATGGCCAACGCGAAAGAAATCGCCAGAACCGTGCAGATGATGGGCGCTGACTTCATCATGTCCCTGGGGGACAACTTCTACTTCACCGGCGTGCATGATGCCAATGATAAGAGGTTCCAGGTA-CGT-GCTCCTCAG---AGTCGGAGGGGACAGC-GGGAGGT--CCCCACGCT-GGGACCTGCCTCT-----GGGAGGGCAGGAGGCAGAGG-ACACCTTC----------AGGCACCTCGGACTCCC-GATGGCTCCCTGGCCCTCGGTTTCTGATCCGGTGGAAGCTGCAGAGTGCCTGGTGACAC-------------GACGCCCTTTCTGTCTGTCTGTCACAGGAGACCTTCGAGGACGTGTTCTCTGACCGCGCCCTTCGCAACATCCCCTGGTACGTGCTGGCTGGAAACCACGATCA------------------- Apodemus_semotus --------------------------------------------------------------------ATGGGCGCCGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGTGTGCATGATGCCAATGATAAGAGGTTCCAGGTA-CGT-GCTCATCAG---AGTCAGAGGGGACAGC-GGGAGGT--CCCCACACT------------------GGGGAGGGCAGGAGCCAGAGG-ACCCCTTC----------AGGCACCTCGGACTCCC-GATGGTGCCCTTGGCCTCGGTTTCTGACCCGGTGGAAGCTGCAGAGTGGCTGGTGACCCCAGCGGAGGGAGGGACGCCCTTACTGTCTGTCTGTCACAGGAGACCTTCGAGGACGTGTTCTCTGACCGCGCCCTTCGCAACATCCCCTGGTACGTGCTGGCTGGAAACCACGATCA------------------- Apomys_datae ----------------------CCGGGAAATAGCCAATGCAAAAGAAATCGCCAGAACGGTGCAGATCATGGGTGCCGATTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGACGCCAATGACAAGAGGTTCCAGGTA-TGT-GC{CT}{CT}AACAG---AGTCAGAGGTGACAGTCGGGAGGTCACTCCATGAT-GGGACCTTCCTCT----GGGGAGGGCAGAAG{AG}-------ACCTCTGC----------GGGGACCTTGGACTCCC-GATAGTTCCCTT-CCCTTGGTTTCTGACTGGGTGGACGCAGCAGAGTGATTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTTTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCAT------------------------ Apomys_hylocoetes_147871 --------------------GCCCGGGAAATAGCCAATGCAAAAGAAATCGCCAGAACGGTGCAGATTATGGGTGCCGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACATGACGCCAATGACAAGAGGTTCCAGGTA-TGT-GCCCAACAG---AGTCAGAGGTGATAGTCGGGAGGTCACTCCATGAT-GGGACCTTCCTCT----GGGGCGGGCAGAAGG-------ACCTCTGC----------GGGGACCTTGGACTCCC-GATAGTTCCCTT-CCCTTGGTTTCTGACTCGGTGGAAGCGGCAGAGTAGTTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTTTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAAC------------------------------------------------------ Apomys_hylocoetes_148149 ------------------------------TAGCCAATGCAAAAGAAATCGCCAGAACGGTGCAGATTATGGGTGCCGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACATGACGCCAATGACAAGAGGTTCCAGGTA-TGT-GCCCAACAG---AGTCAGAGGTGATAGTCGGGAGGTCACTCCATGAT-GGGACCTTCCTCT----GGGGCGGGCAGAAGG-------ACCTCTAC----------GGGGACCTTGGACTCCC-GATAGTTCCCTT-CCCTTGGTTTCTGACTCGGTGGAAGCGGCAGAGTAGTTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTTTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCATGAT--------------------- Archboldomys_luzonensis -------------------AGCCCGGGAAATAGCCAATGCAAAAGAAATCGCCAGAACGGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATAGTCAGGAGGTCACTCCACAAT-GGGACCTTCCTCT----GGGGAGGGCAGAAGG-------ACCTCTAC----------GGGGACCTTGGACTCCC-GATAGTTCCCTT-CCCTTAGTTTCTGATTCGGTGGAAGCAGCAGAGTGGTTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTTTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAA------------------------------------------------------- Arvicanthis_somalicus ---------------CCACAGCCCGGGAAATTGCCAATGCTAAAGAAATTGCCAGAACCGTTCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACGGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATAGTGGGGAGGTCACTCCACACT-GGGACCTTCCTCT----GGCGAGGGCAGAAGGCAGGG---CTCCTAC----------CTGTAACTTGGGCATCC-AGTCGTTTCCTT-CCACTGGACTCTGATTCTGTGGAAGCAGCTGAGGGGCTGTTGA-CCCAGAGGAGGG-----TGCCCTTACTGTCCGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGAAACATCCCCTGGTATGTGCTGGCTGGAAACCACGATCACCTT{CG}-------------- Batomys_granti -TAATGCCCCATTCCACACAGCCCGGGAAGTGGCCAATGCTAAAGAAATGGCCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAACTTCTACTTCACTGGAGTGCATGATGTCAGCGACAAGAGGTTCCAGGTA-TGT-GCTCAGCAG---AGTCAGAGGTGATAGAGGAGGAGCCGCTCCATGCA-GGCACCTTCCTCT----GGGGAGGGGAGAGGGCAGAAGGACTCCT{AG}C----------AGGGACCTCGGACATCC-GATTGTTCCCTTGTCCTTGGTTTCTGATTCGGTGGAAGCAGCTGAGTGGCTGTTGACCTCAGAGGAGGGA----CGTCCTAACTGTCTATC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGCGCCCTCCGCAACATTCCCTGGTACGTGCTGGCTGGGAACCACGACCACCTTGGCAACGTCTCTGCA Chrotomys_gonzalesi -------------------AGCCCGGGAAATAGCCAACGCAAAAGAAATCGCCAGAACGGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATAGTCGGGAGGTCACTCCACGAA-GGGACCTTACTGT----GGGGAGGGCAGAAGG-------ACCTCTACGGGGACCTTGGGGGACCTTGGACTCCC-AGGAGTTCCCTT-CCCTTAGTTTCTGATTCCGTGGAAGCAGCAGAGTGGTTCTTGACCCCAGAGGAGGGA----TGCCCTTACTGTTTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAAC------------------------------------------------------ Conilurus_penicillatis ----------------------------------------------------------CGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGT{GT}CATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGACAGTGGGGAGGTCACTCCACCAT-GGGACCTTCCTCT----GGGGAGGGCAGAAGG-------ACCTCTGA----------GGGGACCTTGGACTT{CT}C-GATAG{GT}TCCCTT-CCCTTGGTTTCTGATTCGGTGGAAGCAGCAGAGTGGTT{GT}TTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTCGAGGACGTGTTCTCTGACCGTGTCCTACGCAAC------------------------------------------------------ Dacnomys_millardi --------------------------------GCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATTATGGGCGCTGACTTCATCATGTCCCTGGGGGACAACTTCTACTTCACTGGAGTGCATGACGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGACAGT-GGGAGACCACTCCACACT-GGGGTCTTTCCCT----GGGGAGGGCAGAAGG-----------------------------ACCTCGGACTCCC-GATGGTTCCGTTGCCCTTGGTTTCTAATTTGGTAGAAGCAACAGAGTGACTGTTGACCCCAGAGTGGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTACGTGCTGGCCGGAAACCATGAT--------------------- Gerbillus_gerbillus ------------------------------TGGCCAATGCTAAAGAGATGGCCAGAACGGTGCAGATTATGGGTGCTGACTTCATCCTGTCCCTGGGGGACAACTTCTACTTCACTGGCGTGCACGATGCCAACGACAAGAGGTTCCAGGTA-TGT-TCTCGACAG---GGTCAGAGGTGACAGT-GGACAGTCACTCTGCGC{CT}-GGGGCCTTCCTCC----GGGGAAGGCAGAGGGCAGAAGGGCTCCCAC----------AGCGGCCCTGGACACCC-AATGGCTCCCTTCTCGTTGGTCTCTAACTTGGTGGGAGCAGCAGGGTGGCTGTTGGCCTCAGAGGAGGGG----TGCCCTCTCTGTCTGCC----ACAGGAGACCTTCGAGGATGTGTTCTCCGAC{CG}GTGCCCTCCGCAACATTCCCTGGTACGTGCTGGCTGGAAACCATGACC-------------------- Hybomys_univattus_SP10553 -------------------------------------TGCTAAAGAAATTGCCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTA{CT}TTCACCGGAGT{AG}CATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-TCTCA{AG}CAG---AGTCAGAGGTGATAGTGGGGATGTCACTCCACACT-GGGACCTTCCTCT----GGGGAGGGCAGAAGGCAGGA---GTCCCAC----------CTGTAACT{CT}GGGCATCC-AATGGTTTCCTT-CCATTGGATTCTGATTCGGTGGAAGCAGCTGAGTGGCTGTTGACCCCAGAGGAGGG-----TGCCCTTACTGTCC{AG}TC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTATGTGCTGGCTG-------------------------------- Hybomys_univattus_SP10599 ---------------------CCCGGGAAATGGCCAATGCTAAAGAAATTGCCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTATTTCACCGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-TCTCAACAG---AGTCAGAGGTGATAGTGGGGATGTCACTCCACACT-GGGACCTTCCTCT----GGGGAGGGCAGAAGGCAGGA---GTCCCAC----------CTGTAACTTGGGCATCC-AATGGTTTCCTT-CCATTGGATTCTGATTCGGTGGAAGCAGCTGAGTGGCTGTTGACCCCAGAGGAGGG-----TGCCCTTACTGTCCATC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCACGATCA------------------- Hylomyscus_parvus_SP10502 ----------------------CCGGGAAATGGCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATGATGGGCGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACATGATGCTAATGACAAGAGGTTCCAGGTA-CGTGGCTCACCAG---GGTCAGAGGGGATAGTAAGGAGGCCGCTCCATGCT-GGGACCTTCTTCT----GGGGAGGGCGGAAGGCAGGAGGATGCCTCC----------GGGTACCTCGGACTCTG-GATGGTTCCCTCACCCTTGGTTTCTGATTTGGTGGAAGCAGCAGAGTGGCTGTTGACCCCAGGGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTTCGCAATGTCCCCTGGTATGTGCTGGCTGGAAACCATGACCA------------------- Hylomyscus_parvus_SP10514 ------------------------GGGAAATGGCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATGATGGGCGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACATGATGCTAATGACAAGAGGTTCCAGGTA-CGTGGCTCACCAG---GGTCAGAGGGGATAGTAAGGAGGCCGCTCCATGCT-GGGACCTTCTTCT----GGGGAGGGCGGAAGGCAGGAGGATGCCTCC----------GAGTACCTCGGACTCTG-GATGGTTCCCTCACCCTTGGTTTCTGATTTGGTGGAAGCAGCAGAGTGGCTGTTGACCCCAGGGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTTCGCAATGTCCCCTGGTATGTGCTGGCTGGAAACCATGACCA------------------- Hyomys_goliath --------------------------------------------------------ACTGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATAGTGGGGAGGTCACTCCACGAT-GGGACCTTCCTCT----GGGGAGGGCAAGAGG-------ACCTCTAC----------GGGGACCTTGAACTCCC-AATAGTTCCCTT-CCCTTGGTTTCTGATTCGGTGGAAGCAGCAGAGTGGTTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCATGATC-------------------- Leggadina_forresti --------------------------------GCCAATGCTAAAGAAATCGCCAGAACGGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTATTGT-GCTCAACAG---AGTCAGAGGTGATAGTGGGGAGGTCACTCCACGAT-GGGACCTTCCTCT----GGGGAGGGCAGAAGG-------ACCTCTGA----------GGGGACCTTGGACTTTC-GATAGTTCCCTT-CTCTTGGTTTCTGATTCGGTGGAAACAGCAGAGTGGTTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACGTCCCCTGGTATGTGCTGGCTGGA------------------------------ Lemniscomys_barbarus_SP5204 -------------------------------------TGCTAAAGAAATTGCCAGAACAGTTCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACCGGGGTGCATGATGCCAGTGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGAGAGTGGGGAGGTCACTCCACACT-GGGACCTTCCTCT----GGGGAGGGCAGAAAGCAGGA---CTCCTAC----------CTGTAACTTGGGCA{CT}CC-AGTCGTTTCCTT-CCACTGGACTCTGCTTCCGTGGAAGCAGCTGAG{GT}GGCTGTTGA-CCCAGAGGAGGG-----TGCCCTTACTGTCCGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCACGAT--------------------- Lemniscomys_barbarus_SP5213 ---------------------------------------CTAAAGAAATTGCCAGAACCGTTCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACCGGGGTGCATGATGCCAGTGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGAGAGTGGGGAGGTCACTCCACACT-GGGACCTTCCTCT----GGGGAGGGCAGAAAGCAGGA--------------------------CTTGGGCACCC-AGTCGTTTCCTT-CCACTGGACTCTGCTTCCGTGGAAGCAGCTGAGGGGCTGTTGA-CCCAGAGGAGGG-----TGCCCTTACTGTCCGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTATGTG--------------------------------------- Leporillus_conditor ----------------------CCGGGAAATAGCCAATGCTAAAGAAATCGCCAGAACCGTGAAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTTCATGATGCCAATGACAAGAGGTTCCAGGT{AT}-TGT-GCTCAACAG---AGTCAGAGGTGACAGTGGGGAGGTCACTCCACGAT-GGGGCCTTCCTCT----GGGGAGGGCAGAAGG-------ACCTCTGA----------GGGGACCTTGGACTTCC-GATAGCTCCCTT-CCCTTGGTTTCTGATTCGGTGGAAGCAGCAGAGTGGTTGTTGACCCCAAAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAAGACGTGTTCTCTGACCGTGTCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCACGATC-------------------- Malacomys_longipes_SP10597 --------------------------------------GCTAAAGAAATTGCCAGAACCGTGCAGATCATGGGTGCTGACTTCATCATGTCCCTGGG{GT}GACAATTTCTACTTCACTGGAGTGCATGATGCCAACGACAAGAGGTTCCAGGTA-TGT-GCTCACCAG---AGTCAGAGGTGACAGAGGGGAGGCCACTCCGTGCT-GGGACCTTCCTCT----GGGGAGGGCAGAAGTCAGAAGGACTCCTTC----------CGGTACCTCGGACTCCCCGATGGTTCCCTTGCCCTTGGTTTCTGACTCAGTGGAGGCCAAAGAGTGGCTGTTGACCCCAGAGGAGGAA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTTCGAAACATCCCCTGGTATGTGCT------------------------------------- Malacomys_longipes_SP10598 ---------------------------------CCAATGCTAAAGAAATTGCCAGAACCGTGCAGATCATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAACGACAAGAGGTTCCAGGTA-TGT-GCTCACCAG---AGTCAGAGGTGACAGAGGGGAGGCCACTCCGTGCT-GGGACCTTCCTCT----GGGGAGGGCAGAAGTCAGAAGGACTCCTTC----------CGGTACCTCGGACTCCCCGATGGTTTCCTTGCCCTTGGTTTCTGATTCAGTGGAGGCCAAAGAGTGGCTGTTGACCCCAGAGGAGGAA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTTCGAAACATCCCCTGGTATGTGCTG------------------------------------ Mastacomys_fuscus -------------------AGCCCGGGAAATAGCCAATGCTAAAGAAAT{CT}GCCAGAACCGTGCAGATTATGGGTGCTGATTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGA{CT}GCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATAGTGGGGAGGTCACTCCACGAT-GGGACCTTCCTCT----GGGGAGGGCAGAAAG-------ACCTCTGA----------GGGGACCTTGGACTTTC-GTTAGTCCCCTT-CCCTTGGTTTCTGATTCGGTGGAAGCAGCAGAGTGGTTGTTGACCCCGGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCACGATCA------------------- Mastomys_natalensis_166943 --------------CACACAGCCCGGGAAATGGCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATGATGGGCGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACACGATGCCAATGACAAGAGGTTCCAGGTA-CGT-GCTCAACAG---GGTCAGAGGTGATAGTGAGGGGGCCACTCCATGCT-GGGACCTTCTTCT----GGGGAGGGTAGAAGGCAGAAGGATGCCTCC----------CGGTACCTCGGACTCCC-GATGGTTCCCTCGCCCTTGGTTTCTGATTCGGTGGAAGCAGCAGAGTGGCTGTTGACCCCAGAGGAGGGA----TGCCCTTCCTGTCTGTC----ACAGGAGACCTTTGAGGATGTGTTCTCTGACCGTGCCCTTCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCACGATCACCTTG-------------- Mastomys_natalensis150104 --------------------GCCCGGGAAATGGCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATGATGGGCGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACACGATGCCAATGACAAGAGGTTCCAGGTG-CGT-GCTCAGCAG---GGTCAGAGGTGATAGTGAGGGGGCCACTCCATGCT-GGGACCTTCTTCT----GGGGAGGGTAGAAGGCAGAAGGACGCCTCC----------CGGTACCT{AC}GGACTCCC-GATGGTTC{CT}TTCGCCCTTGGTTTCTGATTCGGTGGAAGCAGCAGAGTGGCTGTTGACCCCAGAGGAGGGA----TGCCCTTCCTGTCTGTC----ACAGGAGACCTTTGAGGATGTGTTCTCTGACCGTGCCCTTCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCACGATCACC----------------- Maxomys_bartelsii --------------CACACAGCCCGGGAAATGGCCAATGCTAAAGAAATCGCCAGAACTGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATAGTGGGGA----------------GGGCCTTCTCCT----GGGGAGGGCAGAAGGCAG----------------------AAGGACCTCGGACTCCC-GATGGTTCCCTTGCCCTTGGTTTCTGATCCGGTAGAAGCAACAGAGTAACTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCATGATCACCTTG-------------- Mesembriomys_gouldii --------------------GCCCGGGAAATAGCCAATGCTAAAGAAATCGCCAGAACCGTGAAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTTCATGATGCCAGTGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGACAGTGGGGAGGTCACTCCACCAT-GGGGCCTTCCTCT----GGGGAGGGCAGAAGG-------ACCTCTGA----------GGGGACCTTGGACTTCC-GATAGCTGCCTT-CCCTTGGTTTCTGATT-GGTGGAAGCAGCAGAGTGGTTGTTGACCCCAGAGGAGGGA----CGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGAAACATCCCCTGGTATGTGCTGGCTGGGAACCACGATC-------------------- Mus_caroli -----------------------------------------------------------------------------------------------------------------------------------------------------GTA-TGT-GCTCAACAGCAGGGTCAGAGGTGACAGCAGTGAGGTCACTCCACACT-GGGACCTTCCTCT----GGGGAGGACAGAAGGCAGAAGGACGCCTTC----------GGGTACCTCAGGCTCCC-GATAGTTCCCTTGCCCTTGATTTCTGATTTGGTGGAAGCCGCAGAGTGGCTGTTGACTCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAG--------------------------------------------------------------------------------------------- Mus_musculus ---------------C{CT}ACAGCCCGGGAAATGGCCAATGCCAAAGAGATCGCCAGAACCGTGCAGACGATGGGCGCTGACTTCATCATGTCTCTGGGGGACAATTTCTACTTCACTGGAGTGCACGATGCCAGCGACAAGAGGTTCCAGGTA-TGT-GCTCAACAGCAGGGTCAGAGGTGACAGCGGTGAGGTCACTTCACACT-GGGACCTTCCTCT----GGGGAGAGCAGAAGGCAGAAGGAT----------------GGGTACCTCGGGCTTCC-ATTGGTTCCCTTGCCCTTGATTTCTGATTCGGTGGAAGCTGCAGAGTGGCTGTTGACTCCAGAGGAGGGA----TGCCCTTACTGTCTGCC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTTCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCATGATCACCTG--------------- Mus_musculus_AF196855 -----------------------------------------------------------------------------------------------------------------------------------------------------GTA-TGT-GCTCAACAGCAGGGTCAGAGGTGACAGCGGTGAGGTCACTTCACACT-GGGACCTTCCTCT----GGGGAGAGCAGAAGGCAGAAGGATGCCTTT----------GGGTACCTCGGGCTTCC-ATTGGTTCCCTTGCCCTTGATTTCTGATTCGGTGGAAGCCGCAGAGTGGCTGTTGACTCCAGAGGAGGGA----TGCCCTTACTGTCTGCC----ACAGGAG--------------------------------------------------------------------------------------------- Mus_pahari -----------------------------------------------------------------------------------------------------------------------------------------------------GTA-TGC-GCTCAACAGCAGGGTCAGAGATGACAGCAGCGAGGTCACTCCACGCTGGGGGCTTTCCTTT----GGGGAGGACAGAG---AGAAGGACGCCTTC----------GGGTACCTCGGGCTCCT-AATGGTTCCCTGGCCCTTGGTTTCTGATTCGGTGGAAGCCGCAGAATGGCTGTTGACCCCAGAGGAGGGC----TGCCCTTACTGTCTGTC----ACAGGAG--------------------------------------------------------------------------------------------- Mus_spicilegus -----------------------------------------------------------------------------------------------------------------------------------------------------GTA-TGT-GCTCAACAGCCGGGTCAGAGGTGACAGCGGTGAGATCACTCCACACT-AGGACCTTCCTCT----GGGGAGAGCAGAAGGCAAAAGGACGCCTTC----------GGGTACCTCGGGCTCCC-ATTGGTTCCCTTGCCCTTGATTTCTGATTCGGTGGAAGCTGCAGAGTGGCTGTTGACTCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAG--------------------------------------------------------------------------------------------- Niviventer_culteratus ------------------CAGCCCGGGAAATGGCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATTATGGGCGCTGACTTCATCATGTCCCTCGGGGACAACTTCTACTTCACTGGAGTGCATGACGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTTGACAG---AGTCAGAGGTGACAGT-GGGAGGCCACTCCACACC-AGGGCCATTCCCT----GGGGAGGGCAGAAGG-----------------------------ACCTCAGACCCCC-GAGGGTTCCGTTGCCTTTGATTTCTGATTCGGTAGAAGCAACAGAGTGACTGTTGACCCCAGAGGGGGGA----TGCCCTTGCTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGAAACATCCCCTGGTACGTGCTGGCTGGAAACCATGATCACCTT--------------- Notomys_fuscus ----------------------CCGGGAAATAGCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATCATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATAGTGGGGAGGTCACTCCACGAT-GGGACCCTACTCT----GGGGAGGGCAGAAGG-------ACCTCTGA----------GGGGACCTTGGACTTTC-GTTAGTTCCCTT-CCCTTGGTTTCTGGTTCGGTGGAAGCAGCAGAGGGGTTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACAT---------------------------------------------------- Oenomys_hypoxanthus_SP5096 ----------------------------------CAATGCTAAAGAAATCGCCAGAACTGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGACGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATGGTGGGGATGTCACTCCGCACT-GGGAC-TTCCTCT----GGGGAGGGCAGAAGGCAGGA---CTCCTAC----------CTGTAA---------------------------------------CTCGGTAGAAGCAGCTGAGTGGCTGTTGACCTCAGAGGAGGG-----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGAAACATCCCCTGGTATGTGCTGGCTGG------------------------------- Oenomys_hypoxanthus_SP5097 ------------------------------------ATGCTAAAGAAATCGCCAGAACTGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGACGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATGGTGGGGATGTCACTCCGCACT-GGGAC-TTCCTCT----GGGGAGGGCAGAAGGCAGGA---CTCCTAC----------CTGTAA---------------------------------------CTCGGTAGAAGCAGCTGAGTGGCTGTTGACCTCAGAGGAGGG-----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGAAACATCCCCTGGTATGTGCTGGCTGGAAACCACGA---------------------- Parotomys ------CCCCATTTCACACAGCCAGGGAAATAGCCAATGCTAAAGAAATTGCCAGAACCGTGCAGGTTATGGGTGCTGACTTTATCATGTCCCTGGGGGACAATTTCTACTTCACCGGAGTGCATGATGCAAATGACAAGAGGTTTCAGGTA-TGT-GCCCAGCAG---AGTCAGAGGTGACAGT{AG}GGAGGGT----------------------------------GGGCAGAAGGCAGGA---CTCCCAC----------CCGTAA----------------------CT-CCATTGGATTCTGATTCGGTGGAAGCAGCTGAGTAGCTGTTGACCCCAGAGGAGGG-----TGCTTTTACTGTCTGTC----ACAGGAGACCTTTGAAAACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCATGATC-------------------- Phloemys_931080 -TAATGCCCCATTCCACACAGCCCGGGAAATGGCCAATGCTAAAGAAATGGCCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCTCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAACGACAAGAGGTTCCAGGTA-TGT-GCCCAACAG---AGTCAGAGGTGATAGAGGAGAGGCTGCTCCACGCC-GGCACCTTCCTCT----GGGGAGGGGAGAGGGCAGAA--------------------------------------GATTGTTCCCTTGTCCTTGGTTTCTGTTCCG-TGGAAGCAGCTGAGTAGCTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTATC----ACAGGAGACCTTCGAGGATGTGTTCTCTGACCGTGCCCTCCGCAACATTCCCTGGTATGTGCTGGCTGGAAACCACGACCACCTTGGCAACGTCTCTGCA Praomys_jacksoni_SP5001 ------------------------------------ATGCTAAAGAAATCGCCAGAACTGTGCAGATGATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACACGATGCCAATGACAAGAGGTTTCAGGTA-CGT-GCTCAACGG---GGTCAGAGATGATAGTAAGGAGGCCGCTCCATGCT-GGGACCTTCTTCT----GGGGAGGGCAGAAGACAGAAGGAAACCTCC----------GGGTACCTGAGACTCCC-GATGGTTCCCTCGCCTTTGTTTTCTGACTCGGTGGAAGCAGCAGAGTGGCTGTTGACCCCAGAGGAGGGA----TGCCCTTTCTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCTCTTCGCAACATCCCCTGGTATGTGC-------------------------------------- Praomys_jacksoni_SP5002 --------------------------------------GCTAAAGAAATCGCCAGAACTGTGCAGATGATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACACGATGCCAATGACAAGAGGTTTCAGGTA-CGT-GCTCAACGG---GGTCAGAGATGATAGTAAGGAGGC?GCTCCATGCT-GGGACCTTCTTCT----GGGGAGGGCAGAAGACAGAAGGAAACCTCC----------GGGTACCTGAGACTCCC-GATGGTTCCCTCGCCTTTGTTTTCTGACTCGGTGGAAGCAGCAGAGTGGCTGTTGACCCCAGAGGAGGGA----TGCCCTTTCTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCTCTTCGCAACATCCCCTGGTATGTGC-------------------------------------- Praomys_tullbergi_SP10511 -----------------------------------AATGCTAAAGAAATCGCCAGAACCGTGCAGATGATGGGCGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACACGATGCCAATGACAAGAGGTTCCAGGTA-CGT-GCTCAACAG---GGTCAGAGGTGATAGTAAGGAGGCCACTCCATGCT-GGGACCTTCTTCT----GGGGAGGGCAGAAGACAGAAGGAAACCTCC----------GGGTACCTGGGACTCCC-GATGGTTCCCTCGCCCTTGGTTTCTGATTCGGTGGAAGCAGCAGAGTGGCTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGA{CT}GTGTTCTCTGACCGTGCCCTTCG{AC}AACATCCCCTGGTATGTGC-------------------------------------- Praomys_tullbergi_SP10523 -----------------------------------------AAAGAAATCGCCAGAACCGTGCAGATGATGGGCGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACACGATGCCAATGACAAGAGGTTCCAGGTA-CGT-GCTCAACAG---GGTCAGAGGTGATAGTAAGGAGGCCACTCCATGCT-GGGACCTTCTTCT----GGGGAGGGCAGAAGACAGAAGGAAACCTCC----------GGGTACCTGGGACTCCT-GATGGTTCCCTCGCCCTTGGTTTCTGATTCGGTGGAAGCAGCAGAGTGGCTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGATGTGTTCTCTGACCGTGCCCTTCGAAACATCCCCTGGTATGTGCTGGCTGGAAACCACG----------------------- Pseudomys_australis_35938 -----------------------------------AATGCTAAAGAAATCGCCAGAACGGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTATTGT-GCTCAACAG---AGTCAGAGGTGATAGTGGGGAGGTCACTCCACGAT-GGGACCTTCCTCT----GGGGAGGGCAGAAGG-------ACCTCTGA----------GGGGACCTTGGACTTTC-GATAGTTCCCTT-CTCTTGGTTTCTGATTCGGTGGAAACAGCAGAGTGGTTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACGTCCCCTGGTATGTGCTGGCTGGAA----------------------------- Pseudomys_australis_35951 --------------------GCCCGGGAAATAGCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-G{CT}TCAACAG---AGTCAGAGGTGATAGTGGGGAGGTCACTCCACGAT-GGGACCTTCCTCT----GGGGAGGGCAGAAGG-------ACCTCTGA----------GGGGACCTTGGACTTC--GTTAGTCCCCTT-CCCTTGG{CT}TTCTGATTCGGTGGAAGCAGCAGAGTGGTTGTTGACCCCGGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACATCCCCTGGTATGTGCTGGC---------------------------------- Rattus_exulans -TAATGCCCCATTCCACACAGCCCGGGAAATGGCCAATGCTAAAGAAATCGCCAGAACGGTGCAGATTATGGGCGCTGACTTCATCATGTCCCTGGGGGACAACTTCTACTTCACTGGAGTGCATGACGCCAATGACAAGAGGTTCCAGGTA-TGT-CCTTGGCAG---AGTCAGAGGTGACAGT-GGGAGGCCACTCCACACC-GGGGCCTTCCCCT----GGGGAGGGCAGAAGGCAG----------------------AAGGACCTCGGACTCCC-GATGGTTCCGTTGCCCTTGGTTTCTGATTCGGTAGAAGCAACAGAGTGACTGTTGACCCCAGAGGGGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTACGTGCTGGCTGGAAACCATGATCACCTTGGCAACGTCTCTGCA Rattus_norvegicus -TAATGCCCCATTCCACACAGCCCGGGAAATGGCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATTATGGGCGCTGACTTCATCATGTCCCTGGGGGACAACTTCTACTTCACTGGAGTGCATGACGCCAATGACAAGAGGTTCCAGGTA-TGT-CCTTGGCGG---AGTCAGAGGTGACAGT-GGGAGGCCACTCCACATG-GGGGCCTTCCCTT----GGGGAGGGCAGAAGGCAG----------------------AAGGACCTCAGACTCCC-GATGGTTCCCTTGCCCTTGGTTTCTGATTCAGTAGAAGCAACAGAGTGACTGTTGACCCCAGAGGGGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGATGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTACGTGCTGGCTGGAAACCATGATCACCTTGGCAACGTCTCTGCA Rattus_norvegicus_AF196852 -----------------------------------------------------------------------------------------------------------------------------------------------------GTA-TGT-CCTTGGCGG---AGTCAGAGGTGACAGT-GGGAGGCCACTCCACATG-GGGGCCTTCCCTT----GGGGAGGGCAGAAGGCAG----------------------AAGGACCTCAGACTCCC-GATGGTTCCCTTGCCCTTGGTTTCTGATTCAGTAGAAGCAACAGAGTGACTGTTGACCCCAGAGGGGGGA----TGCCCTTACTGTCTGTC----ACAGGAG--------------------------------------------------------------------------------------------- Rattus_villosissimus ---------------------CCCGGGAAATGGCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATTATGGGCGCTGACTTCATCATGTCCCTGGGGGACAACTTCTACTTCACTGGAGTGCATGACGCCAATGACAAGAGGTTCCAGGTA-TGT-CCTTGGTGG---AGTCAGAGGTGACAGT-GGGAGGCCACTCCACACG-GGGGCCTTCCCCT----GGGGAGGGCAGAAGGCAG----------------------AAGGACCTCGGACTCCC-----------TTGCCCTTGGTTTCTGATTCGGTAGAAGCAACAGAGTGACTGTTGACCCCAGAGCGGGAA----TACCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTACGTGCTGGCCGGAAACCATGATCAC------------------ Rhynchomys_isarogensis_EAR1840 -------------------------------------------------------------GCAGATTATGGGTGCTGACTTCATCATGTCCCTTGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCCGAGGTGATAGTCAGGAGGTCACTCTACGAT-GAGACCTTCCTC-----GGGGGGGGGGGGG---------ACCTCTAT----------GGGGACCTTGGACTCCC-GATAGTTCCCTT-CCCTTAGTTTCTGATTCGGTGGAAGCAGCAGAGTGGTTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTTTGTC----ACAGGAGACCTTTGAGGATGTGTTCTCTGACCGTGT---CCGCAAC------------------------------------------------------ Rhynchomys_isarogensis_EAR1857 ------------------------------------------------ACGCC-GAACGGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTTGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCCGAGGTGATAGTCAGGAGGTCACTCTACGAT-GAGACCTTCCTC-----GGGGGGGGGGGGGG--------ACCTCTAT----------GGGGACCTTGGACTCCC-GATAGTTCCCTT-CCCTTAGTTTCTGATTCGGTGGAAGCAGCAGAGTGGTTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTTTGTC----ACAGGAGACCTTTGAGGATGTGTTCTCTGACCGTGTTCTCCGCAACATCCCCTGGTA------------------------------------------- Stochomys_longicaudatus_SP10564 ----------------------------------CAATGCTAAAGAAATTGCCAGAACTGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACCGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCCCAACAG---AATCAGAGGTGATACTGGGGGTGTCACTCCATACT-GGGACCTTCCTCT----GGGGAGGGCAGATGGCAGGA---CTCCTAC----------CTGTAACTCGGGCATCC-AATGGTTTCCTT-CCATTGGATTCTGATTTGGTGGAAGCAGCTGAGTGGCTGTTGACCCCAGAGGAGGG-----TGCCCTTACTGTCCGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCACGATCACC----------------- Stochomys_longicaudatus_TK21562 -------------------------------------TGCTAAAGAAATTGCCAGAACTGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACCGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCCCAACAG---AATCAGAGGTGATACTGGGGGTGTCACTCCATACT-GGGACCTTCCTCT----GGGGAGGGCAGATGGCAGGA---CTCCTAC----------CTGTAACTCGGGCATCC-AATGGTTTCCTT-CCATTGGATTCTGATTTGGTGGAAGCAGCTGAGTGGCTGTTGACCCCAGAGGAGGG-----TGCCCTTACTGTCCGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTATGTGCTGG----------------------------------- Sundamys_muelleri ------------------------------TGGCCAATGC{GT}AAAGAAATCGCCAGAACCGTGCAGATTATGGGCGCTGACTTCATCATGTCCCTGGGGGACAACTTCTACTTCACTGGAGTGCATGACGTCAATGACAAGAGGTTCCAGGTA-TGT-CCTTGGCGG---AGTCAGAGGTGACAGT-GGGAGGCCACTCAACACC-GGGGCCTTCCCCT----GGGGAGGGCAGAAGGCAG----------------------AAGGACCTCGGACTCCC-GATGGTTCCGTTGCCCTTGGTTTCTGATTTG-TAGAAGCAACAGAGTGACTGTTGACCCCAGAGGGGGG-----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAATATCCCCTGGTACGTGCTGGCCGGAAACCATGATCA------------------- Taterillus_emini ------------------------------TGGCCAATGCTAAAGAGATGGCCAGAACCGTGCAGATGATGGGTGCCGACTTCATCCTGTC{AG}CTGGGGGACAACTTCTACTTCACTGGAGTGCACGATGCCAACGACAAGAGGTTCCAGGTG-TGT-TCTCGACAG---GGTCAGAGGTGACCGT-GGACAGTCACTCTACCCT-GGGGCCTTCCTTCCTCCGGGGAAGTCAGAGGGCAGAAGGGCTCCCAC----------AGCT{GT}CCCTGGACACCC-AATGGCTCCCTTCTCGTTGGTCTCTAATTTGGTGGGAGCAGCAGGGT{AG}GCTGTTGACCTCAGAGGAGGGG----TGCCCTCTCTGTCTGCC----ACAGGAGACCTTCGAGGACGTGTTCTCCGACCGTGCCCTCCGCAACATTCCCTGGTATGTGCTGGCTGGAAACCATGACCA------------------- Thallomys_paedulcus_SP5269 ---------------------------------------CTAAAGAAATTGCCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-CGT-GCTCAATAG---ACTCAGAGGTGATAGTGGGGAGGTCACGCCACACT-GGGACCTTCCTCT----GGGGAGGGCAGAAGGCAGGA---CTCCCAC----------CTGTAACTCGGCCATCC-GGTGGTTTCCTT-CCATTGGATTCTGATTCGGGGGAAGCAGCTGAGTGGCTATTGACCCCAGGGGAGGG-----TGCCCTTACTGTCCGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCACGATCA------------------- Thallomys_paedulcus_SP5270 -----------------------------------AATGCTAAAGAAATTGCCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-CGT-GCTCAATAG---ACTCAGAGGTGATAGTGGGGAGGTCACGCCACACT-GGGACCTTCCTCT----GGGGAGGGCAGAAGGCAGGA---CTCCCAC----------CTGTAACTTGGCCATCC-GGTGGTTTCCTT-CCATTGGATTCTGATTCGGGGGAAGCAGCTGAGTGGCTATTGACCCCAGGGGAGGG-----TGCCCTTACTGTCCGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCACG----------------------- Uranomys_ruddi_SP11148 --------------------------------------GCTAAAGAAATCGCCAGAACTGTGCAGATTATGGGTGCTGACTTTATCATGTCCCTGGGAGACAACTTCTACTTCACGGGCGTGCATGATGCCAACGACAAAAGGTTCCAGGTG-TGT-GCTCAGCTG---GGCCAGAGATGACAGCCAGGAGGTCACTC{CT}ACCCT------------------GGGGAAGGCGGCGGGCACAA------------------------------GACATCC-AGTGGTTTCCTGGCCCTCTGCCTCTAATTTGGTGGGAACAAGAGGTTGGCTGTTGACCTCAGCGGAGGGG----TGCCCTCTCTGTCTGTC----ACAGGAGACCTTTGAGGATGTGTTCTCTGACCGTGCCCTCCGCAGCGTCCCCTGGTACGTTTTGGCTGGAAACCAT------------------------ Uranomys_ruddi_SP11151 -------------------------------GGCCAATGCTAAAGAAATCGCCAGAACTGTGCAGATTATGGGTGCTGACTTTATCATGTCCCTGGGAGACAACTTCTACTTCACGGGCGTGCATGATGCCAACGACAAAAGGTTCCAGGTG-TGT-GCTCAGCTG---GGCCAGAGATGACAGCCAGGAGGTCACTCTACCCT------------------GGGGAAGGCGGCGGGCACAA------------------------------GACATCC-AGTGGTTTCCTGGCCCTCTGCCTCTAATTTGGTGGGAACAAGAGGTTGGCTGTTGACCTCAGCGGAGGGG----TGCCCTCTCTGTCTGTC----ACAGGAGACCTTTGAGGATGTGTTCTCTGACCGTGCCCTCCGCAGCGTCCCCTGGTACGTTTTGGCTGGAAACCATG----------------------- Uromys_caudimaculatus -----------------ACAGCCCGGGAAATAGCCAATGCTAAAGAAATCGCCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGCTGATAGCGGGGAGGTCACTCCAC-AT-GGGACCTTCCTCT----GGGGAGGGCAGAAGG-------ACCTCTGA----------GGGGACCTTGGACTTCC-GATAGTTCCCTT-CCCTTGGTTTCTGATTCGGTGGAAGCAGCAGAGTGGTTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACATCCCCTGGTATGTGCTGGCCGGAAACCATGATCACC----------------- Xeromys_myoides ---------------------CCCGGGAAATAGCCAATGCTAAAGAAATAGCCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAATGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATAGTGGGGAGGTCACTCCACGAT-GGGTCCTTCCTCT----GGGGAGGGCAGAAGG-------ACCTCTGA----------GGGGACCTTGGACTTCC-GATAGTTCCCTT-CACTTGGTCTCTGATTCGGGGGAAGCAGCAGAGTGGTTGTTGACCCCAGAGGAGGGGG---TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACATCCCTTGGTATGTGCTGGCTGGAAACCATGACC-------------------- Zelotomys_hildegardeae_SP5147 -------------------------------------TGCTAAAGAAATCGCCAGAACCGTGCAGATGATGGGCGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACACGATGCCAATGACAAGAGGTTCCAGGTA-CGT-GCTCAACAA---GGTCAGAGGTGACAGTGAGGGGGCCA-TCCATGCT-GGCACCTTCTTCT----GGGGAGGGCAGAAGGCTGAAGGACGCCCCC----------GGGTACCTCGGACTCCT-GATGGTTCCCTCGCCCTTGGTTTCTGATTTGGTGGAAGCAGCAGAGTGGCTGTTGACCCCAGAGGAGGGA----TGCCCTTCCTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTTCGCAACATCCCCTGGTATGTGCTGG----------------------------------- Zelotomys_hildegardeae_SP5149 -------------------------------------TGCTAAAGAAATCGCCAGAACCGTGCAGATGATGGGCGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTACACGATGCCAATGACAAGAGGTTCCAGGTA-CGT-GCTCAACAA---GGTCAGAGGTGACAGTGAGGGGGCCA-TCCATGCT-GGCACCTTCTTCT----GGGGAGGGCAGAAGGCTGAAGGACGCCCCC----------GGGTACCTCGGACTCCT-GATGGTTCCCTCGCCCTTGGTTTCTGATTTGGTGGAAGCAGCAGAGTGGCTGTTGACCCCAGAGGAGGGA----TGCCCTTCCTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGCCCTTCGCAACATCCCCTGGTATGT---------------------------------------- Zyzomys_argurus ---------------------------------------------------CCAGAACCGTGCAGATTATGGGTGCTGACTTCATCATGTCCCTGGGGGACAATTTCTACTTCACTGGAGTGCATGATGCCAGTGACAAGAGGTTCCAGGTA-TGT-GCTCAACAG---AGTCAGAGGTGATAGTGGGGAGGTCACTCCACGAT-GGGACCTTCCTCT----GGGGAGGGCAGAAGG-------ACCTCGGA----------GGGGACCTTGGACTTTC-CATAGTTCCCTT-CCCTTGGTTTCTGATTCGGTGGAAGCAGCAGAGTGGTTGTTGACCCCAGAGGAGGGA----TGCCCTTACTGTCTGTC----ACAGGAGACCTTTGAGGACGTGTTCTCTGACCGTGTCCTCCGCAACATCCCCTGGTATGTGCTGGCTGGAAACCATGAT--------------------- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = AP5_extended_taxon_set) = N: 1-475; CODONPOSSET CodonPositions (CHARACTERS = AP5_extended_taxon_set) = N: 1-475; END;