@ARTICLE{TreeBASE2Ref21631,
author = {Paul Andrew Covey and Mia Hanson and Brett Kuwitzky and Kimberly Webb},
title = {Multilocus analysis using fungal pathogenicity genes to describe Fusarium oxysporum from Sugar Beet},
year = {2013},
keywords = {Fusarium oxysporum f. sp. betae, Fusarium yellows, Sugar beet, Beta vulgaris, Effectors, Pathogen, AMOVA, Arlequin},
doi = {},
url = {http://},
pmid = {},
journal = {Phytopathology},
volume = {},
number = {},
pages = {},
abstract = {Sugar beet (Beta vulgaris L.) Fusarium yellows is caused by Fusarium oxysporum Schlechtend.:Fr. f. sp. betae (D. Stewart) and leads to significant reductions in root yield, sucrose percentage, juice purity, and storability. F. oxysporum f. sp. betae can be highly variable and many F. oxysporum isolated from symptomatic sugar beet are non-pathogenic. Identifying pathogenicity factors and their diversity in the F. oxysporum f. sp. betae population, could further understanding of how this pathogen causes disease and provide molecular markers to rapidly identify pathogenic isolates. This study used several previously described fungal pathogenicity genes (Fmk1, Fow1, Pda1, PelA, PelD, Pep1, Prt1, Rho1, Sge1, Six1, Six6, Snf1, and Ste12) as genetic markers, in a population of 26 pathogenic and non-pathogenic isolates of F. oxysporum originally isolated from symptomatic sugar beet. Of the genes investigated, 6 were present in all F. oxysporum isolates from sugar beet (Fmk1, Fow1, PelA, Rho1, Snf1, and Ste12), and 7 were found to be dispersed within the population (Pda1, PelD, Pep1, Prt1, Sge1, Six1, and Six6). Of these, Fmk1, Fow1, PelA, Rho1, Sge1, Snf1, and Ste12 were significant in describing clade designations and PelD, and Prt1 were significant for describing pathogenicity in F. oxysporum f. sp. betae. }
}
Matrix 15554 of Study 13754
Citation title:
"Multilocus analysis using fungal pathogenicity genes to describe Fusarium oxysporum from Sugar Beet".
Study name:
"Multilocus analysis using fungal pathogenicity genes to describe Fusarium oxysporum from Sugar Beet".
This study is part of submission 13754
(Status: Published).
Matrices
Title: PelD MrBayes Posterior output Matrix
Description: MrBayes Analysis
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Fusarium avenaceum F20 PelD |
(none)
|
AAGTTTCGCTGACATT---TCTTCTA-GGT |
Fusarium oxysporum F. sp. betae Fo17 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum F. sp. betae Fob257a PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum F. sp. spinaciae FUS001 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum F. sp. spinaciae FUS003 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum F. sp. spinaciae FUS004 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum F02-78 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum F05-284 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum F05-77 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum F15 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum F33 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum Fo23 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum Fo25 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum Fo27 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium oxysporum Fo29 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Fusarium proliferatum F182 PelD |
(none)
|
AAGTGCTCTGGTCAG----GCTGAGGCGGC |
Columns
None of the columns has a description.