#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 16, 2024; 5:15 GMT

TreeBASE (cc) 1994-2008

Study reference:
Covey P.A., Hanson M., Kuwitzky B., & Webb K. 2013. Multilocus analysis using fungal
pathogenicity genes to describe Fusarium oxysporum from Sugar Beet. Phytopathology,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S13754]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=16;
        TAXLABELS
            Fusarium_avenaceum_F20__PelD
            Fusarium_oxysporum_F._sp._betae_Fo17_PelD
            Fusarium_oxysporum_F._sp._betae_Fob257a_PelD
            Fusarium_oxysporum_F._sp._spinaciae_FUS001_PelD
            Fusarium_oxysporum_F._sp._spinaciae_FUS003_PelD
            Fusarium_oxysporum_F._sp._spinaciae_FUS004_PelD
            'Fusarium oxysporum F02-78 PelD'
            'Fusarium oxysporum F05-284 PelD'
            'Fusarium oxysporum F05-77 PelD'
            Fusarium_oxysporum_F15_PelD
            Fusarium_oxysporum_F33_PelD
            Fusarium_oxysporum_Fo23_PelD
            Fusarium_oxysporum_Fo25_PelD
            Fusarium_oxysporum_Fo27_PelD
            Fusarium_oxysporum_Fo29_PelD
            Fusarium_proliferatum_F182_PelD
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M15554]

	TITLE PelD_MrBayes_Posterior_output_Matrix;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=582;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                           10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580  ]
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Fusarium_avenaceum_F20__PelD                        AAGTTTCGCTGACATT---TCTTCTA-GGTGAGAAGGACGCTGTTTTCGTCCTTGAGGATGGCGCTACCCTTCGTAACGTCGTCATTGGTGCCAACCAGAAGGAGGGCGTTCACTGCCTTGGTGCCTGTAACCTTGAGTTCGTCTGGTTCGAGGACGTCTGCGAGGATGCCATCACTATTAAGGGTAGTGGAACTGCCAACATCATTGGAGGCGGTGCCTACAAGGGTTCCGACAAGCTTATCCAGCACAACGGATGCGGTCACGTCAACATTGTCAACTTCTGTAAGTTTCTAATCCAAGGTATGATGGCTGGTGACTCAGGCTAACTCACCGTAGATGCCAACGACTACGGCAAGGTCTACCGATCATGTGGTAACTGCAAGGGCAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGTGTCACCGCTGTCAACGGCGGTGAGCTCATCGGCATCAACACCAACCTTGGTGATAAGGTCAGT----CATCTTCACATATACA-GGAAGGAGATCATACTGACAAAACCTTCCACAGGCCACCTACAAGAACAACTGCTTCCCCAAGACCCAGTGCCAG
Fusarium_oxysporum_F._sp._betae_Fo17_PelD           AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATCAAGGGTAGTGGAACTGCCAACATCATTGGTGGCGGTGCTTATAAGGCTGCCGATAAGATTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGTC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTATAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAGTATT-CAGCTCATCCCTTGCTAATCATTCTTTCCGCAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
Fusarium_oxysporum_F._sp._betae_Fob257a_PelD        AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATCAAGGGTAGTGGAACTGCCAACATCATTGGTGGCGGTGCTTATAAGGCTGCCGATAAGATTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGTC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTATAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAGTATT-CAGCGCATCCCTTGCTAATCATTCTTTCCGCAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
Fusarium_oxysporum_F._sp._spinaciae_FUS001_PelD     AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATTAAGGGTAGCGGAACTGCCAATATCATTGGCGGCGGTGCTTATAAGGCTGCCGATAAGGTTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGCC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTGTAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAATATT-CAGCTCATCCCTTGCTAATCATTCTTTCCACAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
Fusarium_oxysporum_F._sp._spinaciae_FUS003_PelD     AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATTAAGGGTAGCGGAACTGCCAATATCATTGGCGGCGGTGCTTATAAGGCTGCCGATAAGGTTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGCC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTGTAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAATATT-CAGCTCATCCCTTGCTAATCATTCTTTCCACAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
Fusarium_oxysporum_F._sp._spinaciae_FUS004_PelD     AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATTAAGGGTAGCGGAACTGCCAATATCATTGGCGGCGGTGCTTATAAGGCTGCCGATAAGGTTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGCC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTGTAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAATATT-CAGCTCATCCCTTGCTAATCATTCTTTCCACAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
'Fusarium oxysporum F02-78 PelD'                    AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATCAAGGGTAGTGGAACTGCCAACATCATTGGTGGCGGTGCTTATAAGGCTGCCGATAAGATTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGCC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTATAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAATATT-CAGCTCATCCCTTGCTAATCATTCTTTCCGCAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
'Fusarium oxysporum F05-284 PelD'                   AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATCAAGGGTAGTGGAACTGCCAACATCATTGGTGGCGGTGCTTATAAGGCTGCCGATAAGATTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGTC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTATAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAGTATT-CAGCTCATCCCTTGCTAATCATTCTTTCCGCAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
'Fusarium oxysporum F05-77 PelD'                    AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATCAAGGGTAGTGGAACTGCCAACATCATTGGTGGCGGTGCTTATAAGGCTGCCGATAAGATTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGTC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTATAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAGTATT-CAGCTCATCCCTTGCTAATCATTCTTTCCGCAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
Fusarium_oxysporum_F15_PelD                         AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATTAAGGGTAGTGGAACTGCCAACATCATTGGCGGCGGTGCTTATAAGGCTGCCGATAAGGTTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGCC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTGTAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAATATT-CAGCTCATCCCTTGCTAATCATTCTTTCCACAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
Fusarium_oxysporum_F33_PelD                         AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATCAAGGGTAGTGGAACTGCCAACATCATTGGTGGCGGTGCTTATAAGGCTGCCGATAAGATTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGTC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTATAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAGTATT-CAGCTCATCCCTTGCTAATCATTCTTTCCGCAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
Fusarium_oxysporum_Fo23_PelD                        AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATTAAGGGTAGTGGAACTGCCAACATCATTGGTGGCGGTGCTTATAAGGCTGCTGATAAGGTTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGTC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTATAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAGTATT-CAGCTCATCCCTTGCTAATCATTCTTTCCGCAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
Fusarium_oxysporum_Fo25_PelD                        AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATTAAGGGTAGTGGAACTGCCAACATCATTGGTGGCGGTGCTTATAAGGCTGCTGATAAGGTTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGTC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTATAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAGTATT-CAGCTCATCCCTTGCTAATCATTCTTTCCGCAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
Fusarium_oxysporum_Fo27_PelD                        AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATCAAGGGTAGTGGAACTGCCAACATCATTGGTGGCGGTGCTTATAAGGCTGCCGATAAGATTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGTC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTATAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAGTATT-CAGCTCATCCCTTGCTAATCATTCTTTCCGCAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
Fusarium_oxysporum_Fo29_PelD                        AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAAGACGCTGTGTTCGTTCTTGAAGATGGTGCTACTCTTCGTAATGTTGTCATTGGTGCGAACCAGAAGGAGGGTGTGCACTGTCTTGGTGCTTGCAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGCGAGGATGCTATCTCTATTAAGGGTAGTGGAACTGCCAACATCATTGGTGGCGGTGCTTATAAGGCTGCTGATAAGGTTATTCAGCACAATGGATGCGGCCATGTCAACATTGTCAACTTTTGTAAGTCAAGAGTC-----TCTCCAATTTGAT--CTCATTCTGACTT-CTATAGATGCCAACGACTATGGCAAGGTCTACCGATCTTGCGGCAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTCCACATGGAGGGCGTCACTGCTGTCAACGGTGGCGAGCTTATCGGCATCAACACCAACCTCGGTGACAAGGTACG-----TGCCATACAAAGTATT-CAGCTCATCCCTTGCTAATCATTCTTTCCGCAGGCCACCTACTCCAACAACTGCTACCCCAAGACCCAGTGCCAG
Fusarium_proliferatum_F182_PelD                     AAGTGCTCTGGTCAG----GCTGAGGCGGCGAGAAGGACGCTGTGTTCGTTCTCGAAGACGGCGCTACTCTTCGTAACGTTGTCATCGGTGCGAACCAGAAGGAGGGTGTTCACTGTCTTGGTGCTTGTAACCTTGAGTTTGTCTGGTTTGAGGATGTTTGTGAGGATGCTATCTCTATCAAGGGTAGTGGAACTGCCAACATTATTGGTGGCGGTGCTTATAAGGCTGCCGATAAAATTATCCAGCATAATGGATGCGGCCACGTCAACATTGTCAACTTCTGTAAGTCAACAGTC-----TCTGATATTTGAT--CTCAAACTGACTT-CTTTAGATGCCAACGACTATGGCAAGGTCTACAGATCTTGCGGTAACTGCAAGGGTAACTCCAAGTGCAAGCGATCCGTTCACATGGAGGGCGTCACTGCTGTCAACGGCGGTGAGCTCATTGGCATCAACACCAACCTCGGTGACAAGGTAAGC----TATCTTGTCATATGCT-CCAGATGTGCAATGCTGATCAAA--TACTATAGGCCACCTACTCCAACAACTGCTACCCCAAAACCCAGTGCCAA
;
END;