#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 16, 2024; 5:31 GMT TreeBASE (cc) 1994-2008 Study reference: Hidayat I., Jeewon R., To-anun C., & Hyde K.D. 2006. The genus Oxydothis: New palmicolous taxa and phylogenetic relationships within the Xylariales. Fungal Diversity, 23. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1653] BEGIN TAXA; TITLE TaxonLabelSet12669; DIMENSIONS NTAX=37; TAXLABELS Amphisphaeria_sp. Asordaria_arctica Bartalinia_laurina Bartalinia_robillardoides Clypeosphaeria_mamillana Cryptosphaeria_pullmonensis Cryptosphaeria_subcutanea Diatrype_bullata Diatrype_sp. Diatrype_stigma Discostroma_fuscellum Discostroma_tosta Discostroma_tricellulare Eutypa_lata Eutypea_armeniacae Eutypella_vitis Kretzschmaria_clavus Monographella_albescens_AJ132506 Monographella_albescens_AJ132509 Muscodor_albus Muscodor_vitigenus Oxydothis_cyrtostachicola Oxydothis_daemonoropsicola Oxydothis_frondicola Oxydothis_inaequalis Pestalotiopsis_versicolor Pestalotiopsis_westerdijkii Seiridium_cardinale Seiridium_unicorne Sordaria_fimicola Truncatella_angustata Ustulina_deusta Xylaria_arbuscula Xylaria_hypoxylon Xylaria_mali Xylaria_polymorpha Xylaria_sp ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1640] TITLE 'ITS-Oxydothis'; LINK TAXA = TaxonLabelSet12669; DIMENSIONS NCHAR=612; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Amphisphaeria_sp. TAACTCCCAAA-CCCATGTGAACTTACCAT---TTGTTGCCTCGGCAGAGCCTACC--TGGTATCTACTCTGGAGCGG-CTACCCTGT----AGCTACCCTGG----------------------------------------AGCGGGTTACCCTGT----------AACG--TCCTGCCGGTGGACCT----TTAAACTCTTGTTATTAT----ATAGTAATCTGAGCCTCTTATTTT--AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTGTTGGGAATCTACTGTA------------------------TTGTAGTTCCTGAAATATA---ACGGCGGATCTGCAATATCCTCTGAGC--GTAGTAATTTTTTTC-TCGCTTTG-GTTAGGTGTTGTAGCTCTCAGCCGCTAAACCCCCCAATTTTAA---TGGTTGACCTCG Asordaria_arctica AACTCCAACAAACCATCGCGAATCTTACCCGTACGGTTGCCTCGGCGCTGGCGGTC----------------TGGAAGGCCCTCGGGCCCCCGGATCCTC----------------------------------------------GGGTCTCCCGCTC-----GCGGGAGGCTGCCCGCCGGAGTGCCGAAA-CCAAACTCTTGATATTTT----ATGTCTCTCTGAGTAAACTTTTA---AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCGCCAGTATTCTGGCGAGCATGCCTGTTCGAGCGTCATTTCAACCA--TCAAGCT----CTGCTT-GCGTTGGGGATCCGCGTCTGA-----------------------CGCGGTCCCTCAAAAACA---GTGGCGGGCTCGCTAGTCACACCGAGC--GTAGTAACTCTACATCGCTATGGT-----CGTGCGGCGGGTTCTTGCCGTAAAACCCCCAATTTCTAA----GGTTGACCTCG Bartalinia_laurina TAACTCCCAAA-CCCATGTGAACTTACCT----TTGTTGCCTCGGCAGTAGTTGCTGGGCGAGCCTACCCGGGAACGAGCTACCCTGTAGCGAGTTACCCTGG----------------------------------------AACGACTTACCCTG-------------GAACGCCTGCCGGTGGACTA----CTAAACTCTTGTTATTTT----TAAGTAATCTGAGCGTCTTATTTT--AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTATTGGGAATCGACTTTA------------------------CTGTCGTTCCTCAAATTCA---ACGGCGGATTTATAGCAATCTCTGAAC--GTAGTAA--TTTTTTTTCTCGTTT-TTGAAATACTATAAACCTCAGCCGCTAAACCCCC-AATTTCTT--ATGGTTGACCTCG Bartalinia_robillardoides TAACTCCCAAA-CCCATGTGAACTTACCT----TTGTTGCCTCGGCAGTAGTTGCTGGGCGAGCCTACCCGGGAACGAGCTACCCTGTAGCGAGTTACCCTGG----------------------------------------AACGACTTACCCTG-------------TAACGCCTGCCGGTGGACTA----CTAAACTCTTGTTATTTT----TAAGTAATCTGAGCGTCTTATTTT--AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTATTGGGAATCGACTTTA------------------------CTGTCGTTCCTCAAATTCA---ACGGCGGATTTATAGCAATCTCTGAAC--GTAGTAA--TTTTTTTCCTCGTTT-TTGAAATACTATAAACCTCAGCCGCTAAACCCCC-AATTTTTT--ATGGTTGACCTCG Clypeosphaeria_mamillana ????????TAAACCCCTGTGAACATACCT---ATTGTTGCCTTGGG------------------------------------------------------------------------------------------------------CCGCCTCCGGG-------GGACCCGC--------GAAGGCCCC---CTAAACTCTTGTTTTACT----TTGCAACTCTGAATCTAAA--AAC-AAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTAATACCA--TTAAGCCCC-GTAGCTTAGCGTTGGGAGCCTCTGGCGCA----------------------CCTGCACTCCTCAAAAATA---GTGGCGGAGTTAGCGTATACTCTAGGC--GTAGTAATTTTTCA-CTCGCTTCTGTGT-TGCCGTGGCGCGCGTGCGCGTAAAACAGGCCCAATTTTTAAAGGTTTGACCTCG Cryptosphaeria_pullmonensis AAACTCCCAAAACCCATGTGAACTTACCT----ATGTTGCCTCGGCGGGAAAGCTG----------ACCCGGATGGTAATTACCCTGTAGTTACCCGGG--------------------------------------------AGCGAGCTACCTCGTAGCCCGCTGCAGGCCCACCCGCCGGTGGACAG----TTAAACTCTTGTTTTTTTTCATGTGGCAT-CTGAATGATTATACGT--AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TCAAGCCCTAGCTGCTTGGTGTTGGGAGTTTACCTGC------------------------GGGTAATTCCTCAAATGCA---TCGGCGGAGTCGCGGTG-ACCCCAAGC--GTAGTAATTTTTCCTCGCTTTCGG-AGTGTCGGCGCTGGCGTTCGGCCGTTAAACCCCCTATTTTCT--AGTGGTTGACCTCG Cryptosphaeria_subcutanea AAACTCCTAAAACCCATGTGAACTTACCT----ATGTTGCCTCGGCGGGGAAGCTT----------ACCCGG----TACCTACCCTGTAGACACCCGGG--------------------------------------------AGCGAGCTACCCTGTAGCCCGCTGCAGGCCCACCCGCCGGTGGACAG----TTAAACTCTTGTTTTTT---ATGTGGCATTCTGAATGATTATACTT--AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TCAAGCCCTAGCTGCTTGGTGTTGGGAGTTTACCTGC------------------------GGGTAATTCCTGAAATAAA---TCGGCGGAGTCGCGGTG-ACCCCAAGC--GTAGTAATTTTTCCTCGCTTCAGG-TGTGTCGGTGCTGACGTTCGGCCGTTAAACCCCCTATTTTCT--AGTGGTTGACCTCG Diatrype_bullata CTAACTCC-AAACCCATGTGAACTTACCT----ATGTTGCCTCGGCGGGGAAGCCT----------ACCCGG----TAATTACCCTGTAGTTACCCGGG--------------------------------------------AGCGAGCTACCCTGTAGCCCGCTGCAGGCCTACCCGCCGGCGGACAC----TTAAACTCTTGTTTTAC---AGTGAAACTTCTGATATTTTATACTT--AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCGACCA--TCAAGCCCCAGTTGCTTGGTTTTGGGAGCCTATCTTTAG----------------------GGATAGCTCCTTAAATAGA---GTGGCGGAGTCGTGCTG-ACCCCAAGC--GTAGTAATTCTTTCTCGCTTTAGG-TGC--CGGTGCCGACGTCCTGCCGTTAAACCCCCTATTTTTA--AAAGGTGACCTCG? Diatrype_sp. CTAACTCCCAAACCCATGTGAACTTACCT----ATGTTGCCTCGGCGGGGAAGCCT----------ACCCGG----TACCTACCCTGTAGTTACCCGGG--------------------------------------------AGCGAGCTACCCTGTAGCCCGCTGCAGGCCTACCCGCCGGTGGACAG----TTAAACTCTTGTTTTAC---AGTGAAACTTCTGATATTTTATACTT--AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCGACCC--TCAAGCCTCAGTTGCTTGGTTTTGGGAGCTTATCTCC------------------------GGATAGCTCCTCAAATAGA---GTGGCGGAGTCGTGCTG-ACCCCAAGC--GTAGTAATTTTTTCTCGCTTTAGG-TGC--CGGTGCTGACGTCTTGCCGTTAAACCCCCTATTTT-T--AAAGGTTGATCCTC Diatrype_stigma CTAACTCCCAAACCCATGTGAACTTACCT----ATGTTGCCTCGGCGGGGAAGCCT----------ACCCGG----TACCTACCCTGTAGTTACCCGGG--------------------------------------------AGCGAGCTACCCTGTAGCCCGCTGCAGGCCTACCCGCCGGTGGACAG----TTAAACTCTTGTTTTAC---AGTGAAACTTCTGATATTTTATACTT--AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TCAAGCCTCAGTTGCTTGGTTTTGGGAGCCTATCTCC------------------------GGATAGCTCCTCAAATAGA---GTGGCGGAGTCGTGCTG-ACCCCAAGC--GTAGTAATTTTTTCTCGCTTCAGG-TGC--CGGTGCTGACGTCCTGCCGTTAAACCCCCTATTTTCT--AATGGTTGAC???? Discostroma_fuscellum TAACTCCCAAA-CCCATGTGAACTTACCA----TTGTTGCCTCGGCAGAACCTACC--CGGTACCTACCCTGTAACGACCTACCCTGTAGCGAGTTACCTGGG----------------------------------------AACGGCTTACCCTG------------TAGTGCGCTGCCGGCGGACCT----CTTAACTCTTGTTATTTT----ATAGTAATCTGAGCGTCTTATTTT--AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTGTTGGGAGCCTACTGTA------------------------TTGTAGCTCCCCAAATCCA---ACGGCGGATCTGTGGTATCCTCTGAGC--GTAGTAA-TTTTTATCTCGCTTTT-GTTAGGTGCCGCAGCTCTCAGCCGCTAAACCCCCCAATTTTTT-AATGGTTGACCTCG Discostroma_tosta TAACTCCCAAA-CCCATGTGAACTTACTA----TTGTTGCCTCGGCAGAACCGTACACCGGTACCTACCCTGTAACGACCTACCCTGTAGCGAGTTATCCGGG----------------------------------------AACGGCCTACCCCGGT-TAAGGCCGGCCGGCCTTGGCCCGGTGACTT----CTAAACTCTTGTTATTT-----ATTGTAATCTGAGCGTCTTATTTT--AATAAGTCAAAACTTTCAATTGCGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATCGT--ATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGGCCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTGTTGGGAGCCTACTGTA------------------------TTGTAGCTCCCCAAATCCA---ACGGCGGATCTGTGGTATCCTCTGAGC--GTAGTAA-TTTTTATCTCGCTTTT-GTCAGGTGCCGCAGCTCTCAGCCGCTAAACCCCCAATTTTTTT-AATGGTTGACCTCG Discostroma_tricellulare TAACTCCCAAA-CCCATGTGAACTTACCAT---TTGTTGCCTCGGCAGAGGCTACC--CGGTACCTACCCTGGAGCAG-CTACCCTGT----AGCTACCCTGG----------------------------------------AACGGCCTACCCTGT----------AGCGCATCCTGCCGGTGGACCT----TTAAACTCTTGTTATTTT----AAAGTAATCTGAGCGTCTTATTTT--AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTGTTGGGAATCTACTGTA------------------------TTGTAGTTCCTGAAATATA---ACGGCGGATCTGTAATGTCCTCTGAGC--GTAGTAATTTTTTTCCTCGCTTTG-GTTAGGTGTTGCAGCTCTCAGCCGCTAAACCCCCCAATTTTAA---TGGTTGACCTCG Eutypa_lata CTAACTCCTAAACCCATGTGAACTTACCT----ATGTTGCCTCGGCGGGGAAGCCT----------ACCCGG----TACCTACCCTGTAGCTACCCGGG--------------------------------------------AGCGAGCTACCCTGTAGCTCGCTGCAGGCCTACCCGCCGGTGGACAC----TTAAACTCTTGTTTTTT---TAGTGATTATCTGAGTGTTTATACTT--AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCGACCT--TCAAGCCCTAGCTGCTTGGTGTTGGGAGCCTATCTCC------------------------GGATAGCTCCTGAAAAGCA---TTGGCGGAGTCGCGGTG-ACCCCAAGC--GTAGTAATTCTT-CTCGCTTTAGG-TGTGTCACGGCTGACGTCTTGCCGTTAAACCCCTAATTTTTT-AAATGGTTGACCTCG Eutypea_armeniacae CTAACTCC-AAACCCATGTGAACTTACCT----ATGTTGCCTCGGCGGGGAAGCCT----------ACCCGG----TACCTACCCTGTAGCTACCCGGG--------------------------------------------AGCGAGCTACCCTGTAGCCCGCTGCAGGCCTACCCGCCGGTGGACAC----TTAAACTCTTGTTTTTT----AGTGATTATCTGAGTGTTTATACTT--AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCGACCT--TCAAGCCCTAGCTGCTTGGTGTTGGGAGCCTATCTCC------------------------GGATAGCTCCTCAAAAGCA---TTGGCGGAGTCGCGGTG-ACCCCAAGC--GTAGTAATTCTT-CTCGCTTTAGG-TGTGTCACGGCTGACGTCTTGCCGTTAAACCCCCAATTTTTTTAAATGGTTGACCTCG Eutypella_vitis AACAACTCCAAACCCATGTGAACTTACCT----ATGTTGCCTCGGCGGGGAAACTAC---------------CCGGTAGCTACCCTGT-----------------------------------------------------------AGTTACCCGGTA---------AGGACTACTCGTCGACGGACCA----TTAAACTCTGTTTTTCTA----TGAAACTTCTGAGTGTTTTAACTT--AATAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCGACCA--TCAAGCCCTATTTGCTTGGCGTTGGGAGCTTACCCTGCAGTTGC----------------GGGATAACTCCTCAAATATA---TTGGCGGAGTCGCGGAG-ACCCTGAGC--GTAGTAATTCTTCTCGCTTTAGTA--GTGTTAACGCTGGCATCTGGCCACTAAACCCCTAATTTTTAT--AGGTTTGACCTCG Kretzschmaria_clavus ATAACTCCTAAACCCATGTGAACTTACCTT---CTGTTGCCTCGGCAGGCAGATCCG-CACCTCTTACCCTGTAGTACCTTACCCGGAACGAACCTGCTATTACATAGTAATAG------------AATTCCAACCGGGATAGATAGGCCTACGTGGTAATAAAGTGCGCTCCCGCCTGCCGGTGGACCATGAAATAAACTCTGTTTAATAG----CTGGTATTCTGA-TAATTATATGGAAAT-AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCCTTTGTTGCTTAGTGTTGGGAGCCTACGGCTTTCTC-G-----------------CCGTAGCTCCTTAAAGTTA---GTGGCGGAGTCGGTTCACACTCTAGGC--GTAGTAAATATTTTCTCGCC-----TACGGATGGACCGGTCCCCTGCCGTAAAAAAAAACAAAATATA----TTTTAT????? Monographella_albescens_AJ132506 ?????????CAAACCATGTGAACTTACC----ACTGTTGCCTCGGTGGTTGGCGCT-----------------------------------------------------------------------------------------CCTCCCTCTCTGAA-------AGGGGCGCCGCCGCCGGCGGACAAA---CTAAACTCTTGTCAACTT----TGTCAAATCTGAATCTAAACTAAG-AAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTGTTGGGAGACTGCGCTAAA----------------------CCGCAGCTCCTCAAAACCA---GTGGCGGAGTCCTC-TGTGCTCTGAGC--GTAGTAATTCTCTATCTCGCTTGTATGAACGCAGCGGTCGACGGCCATAAACCGCGCCTCTCCCCCTCCAGGGATTGGGCACC Monographella_albescens_AJ132509 ??AACTCTCCAAACCATGTGAACTTACC----ACTGTTGCCTCGGTGGTTGGCGCT-----------------------------------------------------------------------------------------CCTCCCTCTCTGAA-------AGGGGCGCCGCCGCCGGCGGACAAA---CTAAACTCTTGTCAACTT----TGTCAAATCTGAATCTAAACTAAG-AAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTGTTGGGAGACTGCGCTAAA----------------------CCGCAGCTCCTCAAAACCA---GTGGCGGAGTCCTC-TGTGCTCTGAGC--GTAGTAATTCTCTATCTCGCTTGTATGAACGCAGTGGTCGACGGCCATAAACCGCGCCTCTCCCCCTCCAGGGATTGGGCACC Muscodor_albus TAAACTCCCAACCCTATGTGAACTTACCTT----TGTTGCTTCGGCGGCGGAGGCT----------ACCCTATAGGGGA-TACCACATACTGGTTACCCTGTAGTCCCAGGTGCTAGATCGTGCTCAACGTCTTATCGTCTACGACTAGCTACCCGGT----------GGCCCTCCCCGCCGGCGGCCAACT----AAGCTCTGTTT--T-T----ATGGCATTCTGAATTATAAACTT---AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCAC--TTAAGCC-CTGTTGCTTAGCGTTGGGAGCCTACGGCACTGC--------------------CCGTAGCTCCCTAAAGTGA---TTGGCGGAGTTGGTTCTCACTCTAGGC--GTAGTAAATCTATCTCGCCC-----CTGTAGTGGTTCCGGCCCCTGCCGTAAAACCCCCTATATCAAA----GGTTGACCTCG Muscodor_vitigenus TAAACTCCCAACCCTATGTGAACTTACCTT----TGTTGCTTCGGCGGCGGAGGCT----------ACCCTGCGGGAGAATACCACTTAGTGGTTACCCTGTAGTTTCAGGTAC------------------------------ATCAGCTACCCGGT----------AGTCATCCCCGCCGGCGGCCAACT----AAACTCTGTTT--TCT----TTGGAATTCTGAATAACAAACTT---AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCACCAC--TTAAGCC-TTGTTGCTTAGCGTTGGGAGCCTACGGCACGGC--------------------CCGTAGCTCCTTAAAGTGA---TTGGCGGAGTTGGTTCTCACTCTAAGC--GTAGTAATTATATCTCGCTT-----CTGTAGTGGTCCCGGCCCCTGCCGTAAAACCCCTTATA-CAAA----GGTTGACCTCG Oxydothis_cyrtostachicola ATA?TCCTAAA-CCCATGTGAACATACC------TGTTGCCTCGGCGGGGT-----------------------------TACCCTGT----AGCTGTCCGGT----------------------------------------GTCTACCCTAGAGCTA-CC------CGGCGACACCGCCAGAGGACTA----TTCAACTCT-GTTATTT-----ATGGAAATCTGAGCGTCTTATTT---AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCAGTGGTATTCCACTGGGCATGCCTGTTCGAGCGTTATTAAGTCCAAATTAAGCA----CTGCTTAGCGTTGGAAATCTGCGAGTTTAACTACCCTCAGGGATAGTTGATAGCAGTTTCTTAAATATA--GTTGGCGGATCTATGGTATCCTCTCAGC--GTAGTAG-CTTCTGTTCTCGCTAT-TGTAGGCGCC-TAAGACCCTGCCGTAAAACCCCCAATTTTGAA---TGGTTAACCTCG Oxydothis_daemonoropsicola ??????????????CCAGTGAACCTACCTT---ACGTTGCCTCGGCGGACGCA-------------TGCCGGGCGCAGCCCGCCCCA----AAGCTACTCCGT----------------------------------------AGCGGACGGAGCGGGC-CAAGCCCGGCCGGCGCCGCCGGTGGACCCC----CTAAACTCTTGTATTTTA----GTGGACATCTGAGCGTCTTATTA---AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCA----CAGCTTAGTGTTGGGAATCCGCGGGCTGC--------------------CCCGCGGTTCCCCAAATCC--AGTGGCGGGAACGCGTGTGTCCTCTGAGC--GTAATAAGTTCTCCTTTTTCGCTC-TGCAAGGCGCCGCGGCCCCTGCCGTAAAACACCCAACTTTTTCCAATGGTTGACCTCG Oxydothis_frondicola AAACTCCCAAA--CCATGTGAACCTACCT----ACGTTGCCTCGGCGGAAGCA-------------TGTCGG-CGCGGCCTACCCTG----AAGCTACCCTGT----------------------------------------AGCGGACGG--CCGGC-CCGCCCCGCAGGGCGCCGGCGGA----CCC----CTAAACTCTTGTATTTTA----GTGGACATCTGAGCGTCTTATTA---AATAAGTCAAAACTTTCAACTACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC-CCCGTTAGCGTTCTGGAGGCGATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCA----CAGCTTAGTGTTGGGAATCCGCGGGC-----------------------CTTGCCCCTGCCCAAACTCACAGATGCGCGGAACGATCTGTCCTCTGAGCTCATAGTAAGTTTCTCTTTT????????????????????????????????????????????????????????????????? Oxydothis_inaequalis ??AACTCCAAA-CCCTTGTGAACCTATTCT----AGTTGCTTCGGCGGAATAATAG------------------GTGAGCTACCCTGG----AGCTACCCTGT----------------------------------------AGCTTCTGGGGCGCTA-CC------CTGTGACACCGCCGGTGGCCTACAT-TTAAATTCTTGATATTT-----GTGGACATCTGAGCGTCTTATTT---AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTT?GTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCTAGCGGGGATGCCTGTGCGAGCGTCATTTAAACCC--TTAAGCA----CAGCTTAGCGTTGGGAACCTACAAGTGGGGGCTACCCTGTGTCCACC---CTGTAGCTCCTTAAATATA--CA-GGCGGATCTGCGGTATCCCCTGAAC--GTA-TAA-TCTTTTTTTTTCTCTT-TTTTGGTGTCGCAG-AGCTTGCCTCTAAACCCCCAATTTTAAA---TGGTTGACCTCG Pestalotiopsis_versicolor TAAACTCCCAA-CCCATGTGAACTTACCTT---TTGTTGCCTCGGCAGAA-------------------------------------------------------------------------------------------------ATTATAGGTCTT-CT------TATAGCTGCTGCCGGTGGACCA----TTAAACTCTTGTTATTT-----TATGTAATCTGAGCGTCTTATTTT--AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTGTTGGGAATCTACTTCTCTTAGGA----------------GTTGTAGTTCCTGAAATACA--AC-GGCGGATTTGTAGTATCCTCTGAGC--GTAGTAA-TTTTTTTCTCGCTTTT-GTTAGGTGCTATAACTCCCAGCCGCTAAACCCCCAATTTTTTG---TGGTTGACCTCG Pestalotiopsis_westerdijkii TAAACTCCCAA-CCCATGTGAACTTACCTT---TTGTTGCCTCGGCAGAA-------------------------------------------------------------------------------------------------GTTATAGGTCTT-CT------TATAGCTGCTGCCGGTGGACCA----TTAAACTCTTGTTATTT-----TATGTAATCTGAGCGTCTTATTTT--AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTGTTGGGAATCTACTTCTTTCATTA----------------GTTGTAGTTCCTGAAATACA--AC-GGCGGATTTGTAGTATCCTCTGAGC--GTAGTAA-TTTTTTTCTCGCTTTT-GTTAGGTGCTATAACTCCCAGCCGCTAAACCCCCAATTTTTTG---TGGTTGACCTCG Seiridium_cardinale TAACTCCCAAAACCCATGTGAACTTACCT----TTGTTGCCTCGGCAGAAGCTACC----TGTACCTACCTGGAACAGCCTACC-TG----GAGCGATCCGG------------------------------------------GCTGGCCTACCTGGA-ACGGTCTGGTGGTCGACTGCCGGTGGACCA----TTCAACTCTTGTTATTTT----ATTGTAATCTGAGCGTCTTATTTT--AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTATTGGGAGTCTACTGTA------------------------TTGTAGTTCCTCAAATCCA---ACGGCGGATCTGTGGTATCCTCTGAGC--GTAGTAAATTTTTATCTCGCTTTT-GTCAGGTGCTGCAGCTCCCAGCCGCTAAACCCCCAAATTTTTT-AATGGTTGACCTCG Seiridium_unicorne TAACTCCCAA--CCCATGTGAACTTACCT----TTGTTGCCTCGGCAGAAGCTACC----TGTACCTACCTGGAACAGCCTACC-TG----GAGCGATTCGG------------------------------------------GCTGGCTTACCTGGA-ACGGTCTGGTGGTCGACTGCCGGTGGACCA----TTCAACTCTTGTTATTTT----ATTGTAATCTGAGCGTCTTATTTT--AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTATTGGGAGTCTACTGTA------------------------TTGTAGTTCCTCAAATCCA---ACGGCGGATCTGTGGTATCCTCTGAGC--GTAGTAAATTTTTATCTCGCTTTT-GTTAGGTGCTGCAGCTCCCAGCCGCTAAACCCCCAAACTTTT--AATGGTTGACCTCG Sordaria_fimicola AACTCCCACAAACCATCGCGAATCTTACCCGTACGGTTGCCTCGGCGCTGGCGGTC----------------CGGAAGGCCCTCGGGCCCCCGGATCCTC----------------------------------------------GGGTCTCCCGCTC-----GCGGGAGGCTGCCCGCCGGAGTGCCGAAA-CCAAACTCTTGATATTTT----ATGTTTCTCTGAGTAAACTTTTA---AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCGCCAGTATTCTGGCGAGCATGCCTGTTCGAGCGTCATTTCAACCA--TCAAGCT----CTGCTT-GCGTTGGGGATCCGCGTCTGA-----------------------CGCGGTCCCTCAAAAACA---GTGGCGGGCTCGCTAGTCACACCGAGC--GTAGTAACTCTACATCGCTATGGT-----CGTGCGGCGGGTTCTTGCCGTAAAACCCCCAATTTCTAA----GGTTGACCTCG Truncatella_angustata TAACTCCCAAA-CCCATGTGAACTTACCA----CTGTTGCCTCGGCAGATGTTGCTGGGCGAACCTACCCTGTAGCGAGCTACTCTGTAGCGACCTACCCGGG----------------------------------------AACGGCTTACCCTG-------------TAGCGCCTGCCGGTGGACTA----CTAAACTCTTGTTATTTT----TAAGTAATCTGAGCGTCTTATTTT--AATAAGTCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCC----TAGCTTAGTATTGGGAACTGGCTTTA------------------------CTGCCATTCCTCAAATTCA---ACGGCGGATTTATAGCAATCTCTGAAC--GTAGTAA--TTTTTTT-CTCGTTT-TTGAAATACTGTAAACCTCAGCCGCTAAACCCCCCAATTTTTA--ATGGTTGACCTCG Ustulina_deusta ACAACTCCTAAACCCATGTGAACTTACCTT---CTGTTGCCTCGGCAGGCAGGTCGC-ATCTTGCTACCCTGTAGGACCCTATCCTATAGTACCTTACAGGGGAAGGTA--------------------------CTACCCGGAGAGACCTACCCGGTAGAGAGATGCGGTGCCACCTGCCGGTGGACTGAAAAACAAATTCTGTTTAGTAA----ATGGTATTCTGAATCATTATATGGAAATTAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCCTCTGTTGCTTAGTGTTGGGAGCCTACCGCATTCTTTG-----------------CTGTAGCTCCTTAAAGTTA---GTGGCGGAGTCGGTTCACACTCTAGGC--GTAGTAAAGATTTTATTCTCGCCTGTAGAGATGAGCCGGTCCCCTGCCGTAAAACACCCCCCTATTTT----TTATAAGGTTG Xylaria_arbuscula ACAACTCCCAAACCCATGTGAACTTACCTT---CTGTTGC-TCGGCAGGTCGTG-T--------TTACCCTGTGAGGTCCTACCCTGTAGGAC-------------------------------------------------------CCTACCTGGT----AGACACGGGTACGCCTGCCGGTGGCCCATG----AAACTCTGTTAATCTA----TGTTATTCTGAATCTATAACT----AAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCCCCTGTTGCTTAGCGTTGGGAGCCTACAGCCTT----------------------CTGTAGCTCCCCAAAGTTA---GTGGCGGAGTCGGTTCACACTCTAGAC--GTAGTAGATTCTATCTCGTC-----TGTAGTGAGGCCGGTCCCCTGCCGTAAAACCCCCCTAATTTTT----AAAGGTTGACC Xylaria_hypoxylon ACAACTCCCAAACCCATGTGAACTTACCTT---CTGTTGCCTCGGCAGGTCGTGAC--------CTACCCTGTGAGGCCCTACCCTGTAGGGC-------------------------------------------------------CCTACCCGGT----AGTCGCGGGTACGCCTGCCGGTGGCCCATG----AAACTCTGTTTATTCA----TGTCATTCTGAATCTATAACT----AAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAACCCCTGGTGCTTAATGTTGGGAGCCTACAGACTT----------------------CTGTAGCTTCCCAAAGTTA---GTGGCAGAGTCGGTTTGCACTCTAGAC--GTAGTAATTTCTATCTCGTC-----TGCAGTTAGGCCGGTCCCTCGCCGTAAAACCCCCCTAATCTTT----AAAGGGTGACC Xylaria_mali ATAACTCCCAAACCCATGTGAACTTACCTT---CTGTTGCCTCGGCAGGTCGCGTC---------TACCCTGTGGCA-CCTACCCTGTAGGAC-------------------------------------------------------CCGACCTGGT----GGTCGCGGTCATGCCTGCCGGTGGCCCTTTAA--ACTTTCTGTGTATTCT----ATGTTATTCTGAGTTGGCAACT--AAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCCCCTGTCGCTTAGTGTTGGGAGCCTACAGTCTT----------------------CTGTAGCTCCCTAAAGTTA---GTGGCGGAGTCGGTT--CACTCTAGAC--GTAGTAGAT-CTATCTCGTC-----TATAGTTAAGCCGGTCTCTTGCCGTAAAACCCCCTAATTTCTC----AAGGTTGACCT Xylaria_polymorpha ATAACTCCCAAACCCATGTGAACATACCGT---ACGTTGCCTCGG??GCTGCGTCT-----------CCCCGTGAGGACCTACCCTGTAGGACGCTACGCT-----------------------------------------GTAAGGCTTATCGGG----AAGATGCACTAAAGCCTGCCGGCGGCCCAT----TAAACTCTGTTTATTTT----TGAATTCTGAGG-CTATAATA----AAT-AAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCACTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCCCCTGTTGCTTAGTGTTGGGAGCCTACG---------------------------TCAGCGT?TCTCAAATGTA---GTGGCGGAGTTGGTTCACACTCTAGAC????????????????????????????????????????????????????????????????????????????????????? Xylaria_sp ATAACTCCCAAACCCATGTGAACATACCTT---ACGTTGCCTCGGCAGGTCGCGCC---------TACCCCGTAACGTCCTACCCTGTAGGA--------------------------------------------------------CCTACCCGGT----AGACGCGGGTAAGCCTGCCGGCGGCCCACG----AAACTCTGTTTAATAT----TGAATTCTGAACCTAAAACTA-----AATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCC--TTAAGCCTCTGTTGCTTAGTGTTGGGAGCCTACGGCAC-----------------------CCGTAGCTCCTCAAAGTTA---GTGGCGGAGTCGGTTCACACTCTAGAC--GTAGTAATTCTTATCTCGCCTAT----CAGTTGGACCGGTCCCCTGCCGTAAAACCCCCCATTTTTAA----AGGTTGACCTC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'ITS-Oxydothis') = N: 1-612; CODONPOSSET CodonPositions (CHARACTERS = 'ITS-Oxydothis') = N: 1-612; END;