TreeBASE Search-Matrix 16449 of study 16436

@ARTICLE{TreeBASE2Ref23709, author = {Ryan S Schwarz and Gary R. Bauchan and Charles A. Murphy and Jorgen Ravoet and Dirk C. de Graaf and Jay D. Evans}, title = {Characterization of Two Species of Trypanosomatidae from the Honey Bee Apis mellifera: Crithidia mellificae Langridge and McGhee, 1967 and Lotmaria passim n. gen., n. sp.}, year = {2015}, keywords = {Apidae; flagellate; Kinetoplastea; Leptomonas; protists; systematics; taxonomy; ultrastructure}, doi = {10.1111/jeu.12209-4607}, url = {http://}, pmid = {}, journal = {Journal of Eukaryotic Microbiology}, volume = {}, number = {}, pages = {}, abstract = {Trypanosomatids are increasingly recognized as prevalent in European honey bees (Apis mellifera) and by default are attributed to one recognized species, Crithidia mellificae Langridge and McGhee, 1967. We provide reference genetic and ultrastructural data for type isolates of C. mellificae (ATCC 30254 and 30862) in comparison with two recent isolates from A. mellifera (BRL and SF). Phylogenetics unambiguously identify strains BRL/SF as a novel taxonomic unit distinct from C. mellificae strains 30254/30862 and assign all four strains as lineages of a novel clade within the subfamily Leishmaniinae. In vivo analyses show strains BRL/SF preferably colonize the hindgut, lining the lumen as adherent spheroids in a manner identical to previous descriptions from C. mellificae. Microscopy images show motile forms of C. mellificae are distinct from strains BRL/SF. We propose the binomial Lotmaria passim n. gen., n. sp. for this previously undescribed taxon. Analyses of new and previously accessioned genetic data show C. mellificae is still extant in bee populations, however L. passim n. gen., n. sp. is currently the predominant trypanosomatid in A. mellifera globally. Our findings require that previous reports of C. mellificae be reconsidered and that subsequent trypanosomatid species designations from Hymenoptera provide genetic support.} }

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Matrix 16449 of Study 16436

Citation title: "Characterization of Two Species of Trypanosomatidae from the Honey Bee Apis mellifera: Crithidia mellificae Langridge and McGhee, 1967 and Lotmaria passim n. gen., n. sp.".

Study name: "Characterization of Two Species of Trypanosomatidae from the Honey Bee Apis mellifera: Crithidia mellificae Langridge and McGhee, 1967 and Lotmaria passim n. gen., n. sp.".

This study is part of submission 16436 (Status: Published).

Matrices

Title: Pseudocosmospora tef1

Description: translation elongation factor 1-alpha

Rows

Taxon Label	Row Segments	Characters 1?–30
Pseudocosmospora eutypellae AR4453	(none)	TCGCTCGAATCGACCTCGTCGTTCGTTGCC
Pseudocosmospora eutypellae AR4527	(none)	TCGCTCGAATCGACCTCGTCGTTCGTTGCC
Pseudocosmospora eutypellae AR4562	(none)	TCGCTCGAATCGACCTCGTCGTTCGTTGCC
Pseudocosmospora eutypellae CH1002	(none)	TCGCTCGAATCGACCTCGTCGTTCGTTGCC
Pseudocosmospora eutypellae GJS10248	(none)	TCGCTCGAATCGACCTCGTCGTTCGTTGCC
Pseudocosmospora eutypellae GJS9315	(none)	TCGCTCGAATCGACCTCGTCGTTCGTTGCC
Pseudocosmospora sp AR4768	(none)	------------------------------
Pseudocosmospora rogersonii CH1011	(none)	TCGCTCGAATCGACCTCGTCGTTCGCTGCC
Pseudocosmospora rogersonii GJS9056	(none)	TCGCTCGAATCGACCTCGTCGTTCGCTGCC
Pseudocosmospora sp MAFF241531	(none)	TCGCTCGAATCGACCTCGTCGTTCGTTGCC
Pseudocosmospora rogersonii CH1012	(none)	TCGCTCGAATCGACCTCGTCGTTCGCTGCC
Pseudocosmospora rogersonii GJS091384	(none)	TCGCTCGAATCGACCTCGTCGTTCGCTGCC
Pseudocosmospora sp CH1102	(none)	---GTCGATTCGACCTCGTCGGTCGTTGCC
Pseudocosmospora sp MF241499	(none)	TCGCTCGAATCGACCTCGTCGTTCGTTGCC
Pseudocosmospora vilior AR4771	(none)	GTCGTCGATTCGACCTCGTCGTCCGTTGCC
Pseudocosmospora sp GJS96216	(none)	------------------------------
Pseudocosmospora vilior AR4810	(none)	GTCGTCGATTCGACCTCGTCGTTCGTTGCC
Pseudocosmospora vilior PC1246	(none)	GTCGTCGATTCGATCTCGTCGTCCCTTGCC
Pseudocosmospora eutypae CH1101	(none)	TCCCTGAACTCGACCTCGTCGTTCGTTGCC
Pseudocosmospora eutypae IM73016	(none)	TCCCTGAACTCGACCTCGTCGTTCGTTGCC
Pseudocosmospora sp GJS95141	(none)	TTCGTCGATTCGACCTCGTCGTTCATTGCC
Pseudocosmospora sp AR4826	(none)	TCTGCCGGTTCGACCTTAGCGATCGTTGCC
Pseudocosmospora metajoca AR4576	(none)	TGCGTCGATTCGACCTCATCGCTCGTTACC
Pseudocosmospora joca AR4779	(none)	------------------------------
Pseudocosmospora sp GJS95143	(none)	TTCGTCGATTCGACCTCGTCGTTCGTTGCC
Microcera larvarum AR4580	(none)	CCCATCGATCCGACTCCGTCGCTCGTTGCA
Corallomycetella repens AR4547	(none)	GTCGT----------------TTCGCTGCG

Columns

None of the columns has a description.