@ARTICLE{TreeBASE2Ref22363,
author = {Alberto Cenci and Valentin Guignon and Nicolas Roux and Mathieu Rouard},
title = {Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots},
year = {2013},
keywords = {NAC transcription factors},
doi = {},
url = {http://},
pmid = {},
journal = {Plant Molecular Biology},
volume = {},
number = {},
pages = {},
abstract = {Identifying the molecular mechanisms underlying tolerance to abiotic stresses is important in crop breeding. A comprehensive understanding of the gene families associated with drought tolerance is therefore highly relevant. NAC transcription factors are a large plant-specific gene family involved in the regulation of tissue development and responses to biotic and abiotic stresses. The main goal of this study was to set up a framework of Orthologous Groups (OGs) determined by an expert sequence comparison of NAC genes from both monocots (O. sativa and Musa acuminata) and dicots (V. vinifera and A. thaliana). In order to clarify the orthologous relationships among NAC genes of different species, we performed an in-depth comparative study of four divergent taxa, in dicots and monocots, whose genomes already been completely sequenced: Arabidopsis thaliana, Vitis vinifera, Musa acuminata and Oryza sativa. Due to independent evolution, NAC copy number is highly variable in these plant genomes. Based on an expert NAC sequence comparison, we propose forty orthologous groups of NAC sequences that were probably derived from an ancestor gene present in the most recent common ancestor of dicots and monocots. These orthologous groups provide a curated resource for large-scale protein sequence annotation of NAC transcription factors. The established orthology relationships also provide a useful reference for NAC function studies in newly sequenced genomes such as Musa acuminata and other plant species. }
}
Matrix 18568 of Study 14688
Citation title:
"Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots".
Study name:
"Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots".
This study is part of submission 14688
(Status: Published).
Matrices
Title: MSA OG2a
Rows
|
Taxon Label |
Row Segments |
Characters 1?–30 |
| Arabidopsis thaliana ANAC007 At1g12260 1 |
(none)
|
SHVPPGFRFHPTDEELVDYYLRKKVASKRI |
| Arabidopsis thaliana ANAC026 At1g62700 1 |
(none)
|
SQVPPGFRFHPTDEELVDYYLRKKVASKRI |
| Arabidopsis thaliana ANAC101 At5g62380 1 |
(none)
|
AHIPPGYRFHPTDEELVDYYLKNKVAFPGM |
| Musa acuminata GSMUA Achr11T03780 001 |
(none)
|
SHVPPGFRFHPTEEELVDYYLKKKVASRGI |
| Musa acuminata GSMUA Achr11T17510 001 |
(none)
|
PHVPPGFRFHPTDEELVDYYLRKKVASRRI |
| Musa acuminata GSMUA Achr6T36840 001 |
(none)
|
SCVPPGFRFHPTDEELVGYYLRKKVAARKI |
| Musa acuminata GSMUA Achr7T06640 001 |
(none)
|
SHVPPGFRFHPTDEELVDYYLRKKVAARKI |
| Musa acuminata GSMUA Achr8T11590 001 |
(none)
|
SHVPPGFRFHPTDEELVDYYLRKKVASRRI |
| Oryza sativa Os02g42970 1 |
(none)
|
SHVPPGFRFHPTDEELVDYYLRKKVASKKI |
| Oryza sativa Os04g45340 1 |
(none)
|
SHVPPGFRFHPTDEELVDYYLRKKVALKKI |
| Oryza sativa Os06g01480 1 |
(none)
|
AQVPPGFRFHPTDEELVDYYLRKKVAARRI |
| Vitis vinifera VvNAC02 GSVIVT01001264001 |
(none)
|
SHVPPGFRFHPTDEELVDYYLRKKVASRRI |
| Vitis vinifera VvNAC22 GSVIVT01018623001 |
(none)
|
AHVPPGFRFHPTDEELVDYYLRKKVTSRRI |
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