#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 13, 2024; 1:20 GMT

TreeBASE (cc) 1994-2008

Study reference:
Gu W., Li M., Xu Y., Wang T., Ko J., & Zhou T. 2014. The impact of RNA structure
on coding sequence evolution in both bacteria and eukaryotes. BMC Evolutionary Biology,
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S15642]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=8;
        TAXLABELS
            Bos_taurus
            Canis_lupus_familiaris
            Equus_caballus
            Homo_sapiens
            Macaca_mulatta
            Mus_musculus
            Pan_troglodytes
            Rattus_norvegicus
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M21764]

	TITLE mouse_data_Matrix;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=279;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                  10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270         ]
[                                   .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
Bos_taurus                 ATGAAGGCGCCCGTGGCTGCTCTCGCCGTTCTCCTCTGCGCCATGGCCCTCTGCAGCCAGGTCTTCTCGGCACCATTTGGCGCTGACACCCCAACGGCCTGCTGCTTCTCCTATGTCGCCCGGCAGCTTTCTCGCAAAATCGTAGCTGACTATTTTGAGACCAGCAGCCAGTGCTCCAAGCCTGGCGTCATCTTCCAGACCAAAAAAGGCCGGCAGGTCTGTGCCAACCCCACTGAGGACTGGGTCCAGGAATACATCACCGACCTGGAGCTGAATCCC
Canis_lupus_familiaris     ATGAAGGTCCCCGGGGCTGCCCTCGCCGTCCTCCTCTGCACCATGTCCCTCTGCAGCCAGGTCTTCTCTGCACCATTTGGTGCTGACACCCCAATAGCCTGCTGCTTCTCCTACGTCTCCAAGCAGATTCCACGCAAGTTCATAGTCGACTGCTTTGAGACCAGCAGCCAATGCTCCAAGCCCGGTATTATCTTCGAAACCAGAAAAGGCCGCCAGGCCTGTGCCAACCCCAGTGAGGCCTGGGTCCAGGAATATGTGGCCGATCTGAAGCTGAAAGCC
Equus_caballus             ATGAAGGTCCCCGTGGCTGCCCTTGCCGTCCTCCTCTGCACCATGGCCCTCTGCAGCCAGGTCTTCTCTGTACCATTCGGTGCCGACACCCCAACTGCCTGCTGCTTCTCCTACGTCTCCCGGCAGATTCCGCGCAAATTCATAAACGACTATTATGAGACCAGCAGCCAGTGCTCCAAGCCAGCCATCATCTTCCAAACCAAAAGAAGCCGGCAGGTCTGTGCTGACCCCAGTGAGGCCTGGGTCCAGGAGTACGTGACCGACCTGGAGCTGAGCGCC
Homo_sapiens               ATGCAGGTCTCCACTGCTGCCCTTGCTGTCCTCCTCTGCACCATGGCTCTCTGCAACCAG---TTCTCTGCATCACTTGCTGCTGACACGCCGACCGCCTGCTGCTTCAGCTACACCTCCCGGCAGATTCCACAGAATTTCATAGCTGACTACTTTGAGACGAGCAGCCAGTGCTCCAAGCCCGGTGTCATCTTCCTAACCAAGCGAAGCCGGCAGGTCTGTGCTGACCCCAGTGAGGAGTGGGTCCAGAAATATGTCAGCGACCTGGAGCTGAGTGCC
Macaca_mulatta             ATGCAGGTCTCCACTGCTGCCCTTGCCGTCCTCCTCTGCACCGTGGCTCTCTGCAAGCAGGTCTTCTCTGCACCACTTGGTGCTGACACGCCGACCTCCTGCTGCTTCAGCTACATCTCCCGGCACATTCCACAGAATTTCGTAGCTGACTACTTTGAGACCAGCAGCCAGTGCTCCAAGCCCGGTGTCATCTTCCTAACCAAGAGAGGCCGGCAGGTCTGTGCTGACCCCAGTGAGGACTGGGTCCAGAAATACGTCAGCGACCTGGAGCTGAGTGCC
Mus_musculus               ATGAAGGTCTCCACCACTGCCCTTGCTGTTCTTCTCTGTACCATGACACTCTGCAACCAAGTCTTCTCAGCGCCATATGGAGCTGACACCCCGACTGCCTGCTGCTTCTCCTAC---AGCCGGAAGATTCCACGCCAATTCATCGTTGACTATTTTGAAACCAGCAGCCTTTGCTCCCAGCCAGGTGTCATTTTCCTGACTAAGAGAAACCGGCAGATCTGCGCTGACTCCAAAGAGACCTGGGTCCAAGAATACATCACTGACCTGGAACTGAATGCC
Pan_troglodytes            ATGCAGGTCTCCACTGCTGCCCTTGCTGTCCTCCTCTGCACCATGGCTCTCTGCAACCAG---TTCTCTGCATCACTTGCTGCTGACACGCCGACCGCCTGCTGCTTCAGCTACATCTCCCGGCAGATTCCACAGAATTTCATAGCGGACTACTTTGAGACGAGCAGCCAGTGCTCCAAGCCCAGTGTCATCTTCCTAACCAAGAGAGGCCGGCAGGTCTGTGCTGACCCCAGTGAGGAGTGGGTCCAGAAATATGTCAGCGACCTGGAGCTGAGTGCC
Rattus_norvegicus          ATGAAGGTCTCCACCGCTGCCCTTGCTGTTCTTCTCTGCACCATGGCGCTCTGGAACGAAGTCTTCTCAGCGCCATATGGAGCTGACACCCCGACTGCCTGCTGCTTCTCCTAT---GGACGGCAAATTCCACGAAAATTCATTGCTGACTATTTTGAGACCAGCAGCCTTTGCTCCCAGCCGGGTGTCATTTTCCTGACCAAGAGAAACCGGCAGATCTGCGCTGACCCCAAAGAGACCTGGGTCCAAGAATACATCACTGAGCTGGAACTAAATGCC
;
END;