@ARTICLE{TreeBASE2Ref15032,
author = {Bernard L Cohen and S. Stark and A. B. Gawthrop and M. E. Burke and C. W. Thayer},
title = {Comparison of articulate brachiopod nuclear and mitochondrial gene trees leads to a clade-based redefinition of protostomes (Protostomozoa) and deuterostomes (Deuterostomozoa).},
year = {1998},
keywords = {brachiopod; protostome; phoronid; deuterostome; ectoproct; Protostomozoa},
doi = {10.1098/rspb.1998.0319},
url = {},
pmid = {9569666 },
journal = {Proceedings of the Royal Society B},
volume = {265},
number = {1395},
pages = {475--482},
abstract = {Nuclear and mtDNA sequences from selected short-looped telebratuloid (terebratulacean) articulate brachiopods yield congruent and genetically independent phylogenetic reconstructions by parsimony neighbour-joining and maximum likelihood methods, suggesting that both sources of data are reliable guides to brachiopod species phylogeny. The present-day genealogical relationships and geographical distributions of the tested terebratuloid brachiopods are consistent with a tethyan dispersal and subsequent radiation. Concordance of nuclear and mitochondrial gene phylogenies reinforces previous indications that articulate brachiopods, inarticulate brachiopods, phoronids and ectoprocts cluster with other organisms generally regarded as protostomes. Since ontogeny and morphology in brachiopods, ectoprocts and phoronids depart in important respects from those features supposedly diagnostic of protostumes, this demonstrates that the operational definition of protostomy by the usual ontological characters must be misleading or unreliable. New molecular, operational definitions are proposed to replace the traditional criteria for the recognition of protostomes and deuterostomes, and the clade-based terms 'Protostomozoa' and 'Deuterostomozoa' are proposed to replace the existing terms 'Protostomia' and 'Deuterostomia'.}
}
Matrix 2248 of Study 601
Citation title:
"Comparison of articulate brachiopod nuclear and mitochondrial gene trees leads to a clade-based redefinition of protostomes (Protostomozoa) and deuterostomes (Deuterostomozoa).".
This study was previously identified under the legacy study ID S429
(Status: Published).
Matrices
Title: 12S
Description: Legacy TreeBASE Matrix ID = M629
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Sipunculus nudus |
(none)
|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Lumbricus terrestris |
(none)
|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Liocheles waigiensis |
(none)
|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Tetragnatha mandibulata |
(none)
|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Allotheura sp. |
(none)
|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Magicicada tredecim |
(none)
|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Acanthopleura japonica |
(none)
|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Latimeria chalumnae |
(none)
|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Protopterus annectens |
(none)
|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Xenopus laevis |
(none)
|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Scolecomorphus crosnieri |
(none)
|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
Notosaria nigricans |
(none)
|
CCCCACTATGGT-AGAGACTAAA-CACAGA |
Terebratulina septentrionalis 164 |
(none)
|
CCCCACTATTCT-AGCC-CTAAAACTTAAA |
Terebratulina septentrionalis 163 |
(none)
|
CCCCACTATTCT-AGCC-CTAAAAGTTAAA |
Terebratulina retusa 677 |
(none)
|
CCCCACTATTCT-AGCC-CTAAAACTTAAA |
Terebratulina retusa 678 |
(none)
|
CCCCACTATTCT-AGCC-CTAAAACTTAAA |
Cancellothyris hedleyi |
(none)
|
CCCCACTATTCT-AGCC-TTAAAACTCAAA |
Stenosarina crosnieri |
(none)
|
CCCCACTATTCT-AGAC-AC--AACCCCCG |
Liothyrella neozelanica 289 Sues |
(none)
|
NNNNNNNNNNNNNNNNN-NNNNNNNNNNAA |
Liothyrella neozelanica 290 |
(none)
|
NNNNNNNNNNNNNNNNN-NNGCAACTCCAA |
Liothyrella uva 1024 |
(none)
|
NNNNACTATTCTTGATC-GT--AACTTCAA |
Liothyrella uva 1072 |
(none)
|
CCCCACTATTCT-GGCC-CTAAAACTTAAA |
Liothyrella uva 930 |
(none)
|
NNNNACTATTCT-TGAC-GC--AACTTCAA |
Gryphus vitreus 521 |
(none)
|
CCCCACTATTCT-AGCC-CTAAAACTTAAC |
Gryphus vitreus 525 |
(none)
|
CCCCACTATTCT-AGGT-GC--AACCCCCT |
Dyscolia sp. |
(none)
|
CCCCACTATTCT-TGGC-GC--AACCTCAA |
Abyssothyris sp. |
(none)
|
CCCCACTATTCT-AGAT-AC--AACCCCCC |
Columns
None of the columns has a description.