#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 21, 2024; 13:24 GMT TreeBASE (cc) 1994-2008 Study reference: Guo L., Hyde K.D., & Liew E. 2001. Detection and taxonomic placement of endophytic fungi within frond tissues of Livistona chinensis based on rDNA sequences. Molecular Phylogenetics and Evolution, 20(1): 1-13. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S683] BEGIN TAXA; TITLE 'P4-5'; DIMENSIONS NTAX=21; TAXLABELS Botryosphaeria_dothidea Candida_glabrata Cladosporium_cladosporioides Cladosporium_fulvum Cladosporium_herbarum Cladosporium_oxysporum Cladosporium_sp. Cladosporium_sphaerospermum Cladosporium_tenuissimum Dothidea_hippophaeos Elsinoë_australis MS594 Mycosphaerella_graminicola Ophiosphaerella_herpotricha 'P4-5' 'P4-7' Phaeocryptopus_gaeumannii Phaeosphaeria_avenaria Pleospora_herbarum Saccharomyces_cerevisiae Torulaspora_delbrueckii ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2268] TITLE 'ITS1 5.8S ITS2 with P4-5 P4-7'; LINK TAXA = 'P4-5'; DIMENSIONS NCHAR=564; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Botryosphaeria_dothidea ---CCGAGTTGATTCGGG--C-T---CCGGCCCGATC-CTCCC-ACCCTTTGTGTACCTACCTC---TGTTGC----TTTGGCGGGCCGCGGTCCTCC--GCGGCCGCCCCCC-TCCCCGGGGGGTGACCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTA---AACGATG-CAGTCTGAAAAAC---ATT-TAATA-AACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGTATTCCGAAGG-GCATGCCTGTTCGAGCGTCATTACAA--CC-CTCAAGCTCTGCTTGGTATTGGGCACCGTCCTTTG--CGGG-------------CGCGCC-TCAAAGACCTCGGCGG--TGGCGTCTTGCCT-CAAGCGTAGTAGAACATACAT-CTCG-CTTCGGAGCGCAGGGCGTCGCCCGCCGGACGAACCTTCTGAA---CTTTTCTCAAGG---------- Candida_glabrata TGGATCTCTCTATTCCAAAGAGGTGTTTTATCACACGACTCGACACTTTCTAATTACTACACACAGTGGAGTTTACTTTACTACTATTCTTTTGTTCGTTGGGGGAACGCTCT-CTTTCGGGGGGGAGT--TCTCCCAGTGGATGCAAACACAAACAAATATTTTTTTAAACTAATTCAGTCAACA-CAAAGAAA---A-CAACTTCAAAACTTTCAACAATGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCTCTGGTATTCCGGGGG-GCATGCCTGTTTGAGCGTCATTTCCTTCTCAAACACATTGTGTTTGGTAGTGAGTGATACTCGTTTTTGAGTTAACTTGAAATTGTAGGCCATATCAGTATGTGGGACACGAGCGCAAGCTTCTCTATTAATCTGCTGCTCGTTTGCGCGAGCGGCGGGGGTTAATACTGTATTAGGTTTTACCAACTCGGT-----GTTGATCTAGGGAGGGATAAG Cladosporium_cladosporioides ----CAAGT-GACCCCGG--TCTAA-CCACCGGGATG-TTCATAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTTCGGGCG--GTG--GCTCCGGGT--GGATACTTCAAACTCTTGCGT------AACTTTG-CAGTCTGAGTAAACTTAAT-TAATA-AATTAAAACTTTTAACAACGTATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCAA-------CG--CGGTCC-------GCCGGTGGCC-TCAAATCGACCGGCTG--GGTCTTCTGTCCCCTAAGCGTTGTGGAAACTA-TT---CG-CTAAAGGGTGTT-CGGGAGGCTACGC-GT----AAAACAACC---CCATTTCTAAGG---------- Cladosporium_fulvum -------CTGAGTGAGGG--C-T---CACGCCCGACC-TCCA--ACCCTCTGT-GAACC--AAC---TCTG------T-TG------------CTTCG--GGGGCGACCC-GC--CGTTTCGGAACGGC--GCCCC--G---GAGATCATC-AA--ACACTGC------ATCTTT--GCGTCGGAGTCTT-AAAGT-AAATTTAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCGTGGTATTCCGCGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTAGCTTGGTATTGGGCG-------TCG--CGGT----T-----CCGCGCGCC-TTGAAGTCTCCGGCTG--AGC-AGTTCGTCTCTAAGCGTTGTGGCATATA-TT--TCG-CTAAAGAGTTCG-GG---CGGCTTTTGG-----CCGTTAAAT---CTTT-TCAAAGG---------- Cladosporium_herbarum ----CAAGA-ACGCCCGG--GCTT--CGGCCTGGTTA-TTCATAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTTCGGGCG--GGG--GCTCCGGGT--GGACACTTCAAACTCTTGCGT------AACTTTG-CAGTCTGAGTAAACTTAAT-TAATA-AATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG--CATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCAAA------CG--CGGTCC-------GCCGCGTGCC-TCAAATCGTCCGGCTG--GGTCTTCTGTCCCCTAAGCGTTGTGGAAACTA-TT---CG-CTAAAGGGTGTT-CGGGGGGGTACCTG-T----AAAACAACC---CCATTTCTAAGG---------- Cladosporium_oxysporum ----CAAGA-ACGCCCGG--GCTT--CGGCCTGGTTA-TTCATAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTTCGGGCG--GGG--GCTCCGGGT--GGACACTTCAAACTCTTGCGT------AACTTTG-CAGTCTGAGTAAACTTAAT-TAATA-AATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCAA-------CT--CGGTCC-------GCCGGGTGCCCTCAAATCGTCCGGCTG--GGTTCTCTGTCCC-TAAGCGTTGTGGCAACTA-TT---CG-CTAAAGGGTGTT-CGGGAGGCTACGCGTT----AAAACAACC---CCATTTCTAAGG---------- Cladosporium_sp. ------AGT-GACCCCGG--TTTC--CCACCGGGATG-TTCATAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTTCGGGCG--GGG--GCTCCGGGT--GGGCACTTCAAACTCTTGCGT------AACTTTG-CAGTCTGAGTAAACTTAAT-TAATA-AATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCAA-------CG--CGGTCC-------GCCGCGTACC-TCAAATCGACCGGCTG--GGTCTTCTGTCCCCTAAGCGTTGTGGAAACTA-TT---CG-CTAAAGGGTGTT-CGGGAGGCTACGCCGT----AAAACAACC---CCATTTCTAAGG---------- Cladosporium_sphaerospermum ----CAAGTTGACACCCG--CCCTC-GGTCCGGGATG-TTCACAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTCCGGGCG--GGG--GCCCCGGGT--GGACATTTCAAACTCTTGCGT------AACTTTG-CAGTCTGAGTAAATTTAAT-TAATA-AATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCGA-------CG--CGGTCC-------GCCGGCG-CC-TCAAATCGACCGGCTG--GGTCTTTCGTCCCCTCAGCGTTGTGGAAACTA-TT---CG-CTAAAGGGTGCCGCGGGAGGCCACGCCGT----AAAACAACC---CCATTTCTAAGG---------- Cladosporium_tenuissimum ----CAAGT-GACCCCGG--TCTAA-CCACCGGGATG-TTCATAACCCTTTGTTGTCCGA---C---TCTG------T-TG------------CCTCC--GGGGCGACCCTGC--CTTCGGGCG--GGG--GCTCCGGGT--GGACACTTCAAACTCTTGCGT------AACTTTG-GAGTCTGAGTAAACTTAAT-TAATA-AATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGGAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTCGCTTGGTATTGGGCAA-------CG--CGGTCC-------GCCGGTG-CC-TCAAATCGACCGGCTG--GGTCTTCTGTCCCCTAAGCGTTGTGGAAACTA-TT---CG-CTAAAGGGTGTT-CGGGAGGCTACGCCGT----AAAACAACC---CCATTTCTAAGG---------- Dothidea_hippophaeos ---AAGATTGAGTGTCGCGACCTAAAAAATCGCGACCACTTCCAACCCTCTGTTGTTATAACTACCTTGTTGC----TTTGGCGGGACCGTTCGGTCCTCCGAGCGCA-CCAG-TCCTCG--GACAGGTGAGCGCCCGCCAGAGT-CCAACCAAACTCTTGTTTTT---AACCAG--TCGTCTGAGTATAAAATTT-TAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTGTTCGAGCGTCATTACA---CCACTCAAGCACTGCTTGGTATTGGGC-A------TCG--TCCGTC-GAAAGGCGGGCGTGCC-TCGAAGACCTCGGCGG--GGTTTCTCCAACTTCGGGCGTAGTAGAGTTAAATCGAACGTCTTATAAG--CTTGGTGGGACTCCATTG-----CCGTTAAAC---CTTT-----TATTTTTAT-AGG Elsinoë_australis ---ACGAGGAAGGGTT-T--CCGAAAGGAGCCCGAAC--TCCCCACCCTTTGCTGTTGCGAATC---TGTTGC----TTCGGCGGGCCCGCCCCCCCATCCCTGGGGGGCCGG-GCCTCACCGCCCGGACAGCGCCCGCCGGAGGACCGAATCAACTCTGTTTTTA---ACCATA--ATGTCGGAGTACTTTTGTA-CAATCAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCGAGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCAATCAAGCCCCGCTTGGTATTAGGCGCCTG--GCCG--CCCCCC-CCGTGGCCGGCCCGCC-CGAAATGCATCGGCG---AGG--CACCGACCCCCGGCGTGTTAGAATTTC-GA-AACGTC--AGGAGCACCGGTGTTAA--CCTCTG-----CCGTGAAAC---CTTTCAAACTATTTTTCT-AAG MS594 ---CCGAGCGAAGGGGCG--CC-CG-C-GCCCCGACC-GCCC--ACCCTCTGT-GAACGAAACC---CGT---------TG------------CCTCG--GGGGCGACCCGGA--CGTCACGTC-CGGC--CGCCCCCG---GGGGTGACCCAA---CACTGC------ATCTGT--GCGTCGGAGTACT-TCAGT-AATG--AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGCATTCCGGGGG-GCATGCCCGTTCGAGCGTCATTTCA---CCACTCCCGCCTGGCGGGGTATTGGGCG-------CCG--CGGCC-----TCGGCCGCGCGCC-TCGAAGTCTCCGGCCG--AGT-CGTTCGTCTCCCAGCGTTGTGGCACACA-AT-CTCG-CTG-CG-GTGGG-CG-GACGGC-GGCGG-----CCGTCGA-A---CTCC-TTACAGG---------- Mycosphaerella_graminicola -------CCGAGCGAGGG--CCTC--CGGGTCCGACC-TCCA--ACCCTTTGT-GAACACATCC---CGT---------TG------------CTTCG--GGGGC----------GACCCTGCC-GGGC--GCCCCCGG---AGGACCACCAAAAAACACTGC------ATCTCT--GCGTCGGAGTTTA-CGAGT-AAATCGAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCCTGGTATTCCGGGGG-GCATGCCCGTTCGAGCGTCATTACA---CCACTCCAGCCTCGCTGGGTATTGGGCGTCTTTTCGCG--GGGGAT-CACTCCCCCGCGCGCC-TCAAAGTCTCCGGCTG--AGCGGTCTCGTCTCCCAGCGTTGTGGCATCAC-GT-CTCG-CCGCGGAGTTCA-CGAGCCCTC--ACGG-----CCGTTAAAT---CACA-CCTCAGG---------- Ophiosphaerella_herpotricha TCCGTAGGTGAACCTGCGGAAGGATCATTACACGATAGTACAGGCCCCAAGTGTAGAA-CAAACTACGCAGACGGGTTATGTCTATTA---CCCTTGTTTATTGAGTACCTAT-GTTTCCTTGGTGGGCTTGCCCGCCAAAAGGACACCCTATTAAACCTTTTTAT--TTTCAATCAGCGTCTGAATAAA---AA--TAAT--AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCATGGG-GCATGCCTGTTCGAGCGTCATTTGTA--CC-TTCAAGCTCTGCTTGGTGTTGGGTGTTTG---TCT--ACTCCACTGCGTTTGGACTCGCC-TTAAAGTAATTGGCAGCCTATATTT-GGTTTTGA-GCGCAGCACATTTTGCG---TCTTACTGCCAG--TTATATAGGCACCCAAT------AAGCCT-------TTTTATCACGT---------- 'P4-5' ------CCTCGGGGAGAG--GG----CGGGCCGTATC-CCAC--ACCCTTTGT-GAACCACAAC---TCTG------T-TG------------CTTCG--GGGGCGACCCTGC--CGTCAGGCGGCGGT--GCCCCCGGTG-GCCTTCAACTAA--ACTCTGC------ATCTTTT-GCGTCGGAGTCTT-TTAAA-GAATT-AAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCGTGGTATTCCGCGGG-GCATGCCTGTTCGAGCGTCATTTCA---CCACTCAAGCCTAGCTTGGTATTGGGCG-------CCG--CGGCGAACTCATCGCTGCGCGCC-TTAAAGTCTCCGGCTG--AGC-AGCCTGTCTCCGAGCGTTGTGACACATG-T----CG-CTAGGGAGTGCA-GG---TCTGCCGCGG-----CCGTTAAAT---CTTTATCAAAGG---------- 'P4-7' -----AAGAGATGGCGGG--CCTCG-CTGCCCCCGTC-CCTC--ACCCTTTGTTGACCGAAAAA---CCTT------TTTG------------CCTCG--GGGGC---CGTGT--GGCCACGGC-CGCC--GCTCCCAG---AGGACCAACCAA---CGCTGT------CTCTGT--GTGTCGGAGTACA-TGATT-GAAT--AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGAACATTGCGCCCTTTGGCATTCCGAGGG-GCATGCCCGTTCGAGCGTCATTAAAT--CCAATCCAGCCCGGCTGGGTGTTGGGCGAT-----CCG--GGGGCC-GTGTGGTCCCCGCGCC-TCAAAGTCCGTCGCTG--TTCGCACCCGAATCTCAGCGTCGTGGAATCCG-TT--TCG-CTGGCGAGAGGG-GG-GCCGTCCGGCCG-----TCGTCGAGA---CGAA-CGATGTTTTTTCTCAGG Phaeocryptopus_gaeumannii ---AAGAGTAAGGGTTATT-CGTAG-----CCCGACC---TCCAA{AC}CCTTTGTTGTTATAACTACCTCGTTGC----TTTGGCGGGACCGCTCGGTCT--CGAGCTG--CTGG-TCTTCG--GCCCGGCAAGTGCCCGCCAGAGT-CTACTCAAACTCTTGTTTT----AACCGG--TCGTCTGAGT-TAAACTTT-TAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAAATCTTTGAAACGCACATTGCGCTCCCTGGTATTCCGGGGGAGCATGCCTGTTCGAGCGTCATTACA---CCACTCAAGCACTGCTTGGTATTAGGCCA------TCG--TCCCCC-GAAAGGTGGGCGTGCC-TCAAACACCTCGGCGG--AACCTCACCGGCTTTGGGCGTAATAAAATTTC-TC-AACGTCTTATAAGTACCGGTTCTGACTCCTTTG-----CCGTTAAAC---CCCA-----AACTTTTAA-AGG Phaeosphaeria_avenaria TCAGTAGTTTACTACTGTAAAGGAGGCTGTTAGTCT-GTATAG--CGCAAGCTGATGA-GCAGCTAGCCTC-----TTTTATCCA------CCCTTGTCTTTTGCGTACCCAC-GTTTCCTCGGCAGGCTTGCCTGCCGATTGGACAAACCTATAACCTTTTTAAT--TTTCAATCAGCGTCTGAA-AAA---CT--TAAT--AATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCATGGG-GCATGCCTGTTCGAGCGTCATTTGTA--CC-CTCAAGCTCTGCTTGGTGTTGGGTGTTTG---TCC--TCTCCCTAGTGTTTGGACTCGCC-TTAAAATAATTGGCAGCCAGTGTTTTGGTATTGAAGCGCAGCACAAGTCGCG---A-TTCTTATCAA--ATACTT--GCGTCCAC-------AAGCCC-------TTTTTTAACTT---------- Pleospora_herbarum -----------------CACAATATGAAAGCGGGTTGGGACCTCACCTCGGTGAGGGCTCCAGCTTGTCTGA-----ATTATTCA------CCCATGTCTTTTGCGCACTTCTTGTTTCCTGGGCGGGTTCGCCCGCCACCAGGACCAAACCATAAACCTTTTTGTAATTGCAATCAGCGTCAGTAAACA---ATG-TAAT--TATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCTTTGGTATTCCAAAGG-GCATGCCTGTTCGAGCGTCATTTGTA--CC-CTCAAGCTTTGCTTGGTGTTGGGCGTCT----TTG--TCTCTCACGAG-----ACTCGCC-TTAAAATGATTGGCAGCCGACCTACTGGTTTCGGAGCGCAGCACAATTCTTGC--ACTTTGAATCAGCCTTGGTTGAGCATCCATC------AAGACCACA---TTTTTTTCAACT---------- Saccharomyces_cerevisiae ACGGTGAGAGATTTC---TGTGCTTTTGTTATAGGACAATTAAAACCGTTTCAATACAACACACTGTGGAGTTTTCATATCTTTG--CAACTTTTTCTTTGGG-----------CATTCGA--GCAATC--GGGGCCAGAGGTAACAAACACAAACAATTTTATTTATATTAAATTTTTGTCAAAAACAAGGAAATTTAAAATATTAAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAA-TCTTTGAA-CGCACATTG-?CCCCTTGGTATTCCAGGGG-GCATGC-TGTTTGAGCGTCATTTCCTTCTCAAACA--TTCTGTTTGGTAGTGAGTGATACTCTTTG--GAGTTAACTTGAAATTGCTGGCCTTTTCATTGGATGTTTTTTTTTTCCAAAGA-------GAGGTTTCTCTGCGTGCTTGAGTATAATGCAAGT-ACGGTCGTTTTAGGTTTTACCAACTGCGGCTAACTTTTTTATACTGAGCG-TA-T Torulaspora_delbrueckii GGGGCTTCTGTATTC---ACTGTTTCTCTGTCTG--CGGTTCACTGCCTAAAAATTATACACACACTGGAGTTTTCTTTTAAAACA-CTTCTTCTTCTTTGGG-----------CTT------GCAA----GAGCCCGGAGTTGACAAACACAAACAATTTTGTT-ATATTATAATCAAGTCAAAACCAATGAAATACAAATAATTTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCCGTGAATCATCGAA-TCTTTGAA-CGCACATTGCGCCCCTTGGTATTCCAGGGG-GCATGCCTGTTTGAGCGTCATTTCCTTCTCAAAGAACTCTTCTTTGGTAGTGAGTGACACTCTTTCTAGAGTTAACTTGAAATTGCTAGCCATATAATAGC-TGTTGATTGCTGACTTTG--------GACGGAGCGATTTGTCC---AGTCTGCTGATACCGATTGTCGTATTAGGTTTTACCAACTTCGACGGACGTAGTGTTAGTGGGCGTTACT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'ITS1 5.8S ITS2 with P4-5 P4-7') = N: 1-564; CODONPOSSET CodonPositions (CHARACTERS = 'ITS1 5.8S ITS2 with P4-5 P4-7') = N: 1-564; END;