#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on April 26, 2024; 8:58 GMT

TreeBASE (cc) 1994-2008

Study reference:
Crous P.W., Decock C., & Schoch C.L. 2001. Xenocylindrocladium guianense and X. subverticillatum,
two new species of hyphomycetes from plant debris in the tropics.
Mycoscience, 42: 559-566.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S718]

BEGIN TAXA;
        TITLE  Combined;
        DIMENSIONS NTAX=11;
        TAXLABELS
            Curvicladium_cigneum_STEU_1595
            Cylindrocladiella_infestans_ATCC_44816
            Cylindrocladiella_microcylindrica_ATCC_38571
            Cylindrocladium_floridanum_ATCC_18882
            Cylindrocladium_scoparium_ATCC_46300
            Fusarium_subglutinans_NRRL_22016
            Gliocladiopsis_tenuis_IMI_300597
            Xenocylindrocladium_guianense_STEU_3396
            Xenocylindrocladium_guianense_STEU_3397
            Xenocylindrocladium_serpens_STEU_1144
            Xenocylindrocladium_subverticillatum_STEU_3397
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2286]

	TITLE ITS1_5.8S_ITS2_rDNA;
	LINK TAXA = Combined;
	DIMENSIONS NCHAR=538;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530        ]
[                                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .        ]
Curvicladium_cigneum_STEU_1595                     ??CATTACCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTCAAACGTTCCCTCGGCGG-T--GTCCCGCGC---TCCGGCA--AGGGCCCGCCAGAGGACCCAACAAACTCTTTGTATTTCAATCTAGTATCTTCTGAGTGAAAACAAACAATAAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGC-CTCTTCTGG-CTTGGTGTTGGGGATCGGCACGGGCGCCCTCAGGGG-CGCTGCCGTCCCCCAAATCTAGTGGCGGTCTCGCTGTAGCCAACTCTGCGTAGTAATACA--CCTCGCACTGGAAGCTCGGCGCGGCCAAGCCGTTAAACCCCCAACTTTTTTT?????????????????????????????????????????
Cylindrocladiella_infestans_ATCC_44816             ??CATTACAGAGTTTACAACTCCCAAACCCC-TGTGAACA-TACC-A-GTCGTTGCCTCGGCGG-T--GT--CTTGC---TTCGGCG--A--GCCCGCCAGAGGACCCAACAAACTCTT---GTTTT--TTTAGTATTATCTGAGTGACAA-GTTTAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAACCCCC----GGGTTTGGTGTTGGAGATCGGCATGA-GTCCTTCGGGGCG--ACGCCGTCTCCCAAATATAGTGGCGGTCTCGCTGTAGCTTCCTATGCGTAGTAGCACA--CCTCGCACTGGAAA-GCAGCGCGGCCACGCCGTTAAACCCCCAACTTTT--CTGAGTTTGACCTCGAATCAGGTAGGATTACCCGCTGAACTT
Cylindrocladiella_microcylindrica_ATCC_38571       ??CATTACAGAGTTTACAACTCCCAAACCCC-TGTGAACT-TACC-ATGTCGTTGCCTCGGCGG-T--GT--CTTGC---TTCGGCG--A--GCCCGCCAGAGGACCCAACAAACTCTT---GTTTT--TTTAGTATTATCTGAGTGACAA-GTTTAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAACCCCC----GGGTTTGGTGTTGGAGATCGACATGAAGCCCTTCTGGGTGTGAAGTCGTCTCCCAAATATAGTGGCGGTCTCGCTGTAGCTTCCTATGCGTAGTAGCACA--CCTCGCACTGGAAA-GCAGCAAGCCCACGCCGTTAAACCCCCCACTTT---CTGAGTTTGACCTCGAATCAGGTAGGATTACCCGCTG?????
Cylindrocladium_floridanum_ATCC_18882              ??CATTACCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG-T--GTCCG-----------GCA--ACGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT--TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACCTTCGGGAGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTTCGGGT-CGC-GCCGTCCCCCAAATTTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAGTCTCGGTGCGACCACGCCGTAAAACCCCCAACTTTTTCT--GGTTGACCTCGAATCAGGTAGGACTACCCGCT???????
Cylindrocladium_scoparium_ATCC_46300               ???????CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG-T--GTCCG-----------GCA--ACGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT--TTCAGTATCTTCTGAGTAAAAAAAAACAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCT-------GCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGT-CGC-GCCGTCCCCCAAATATAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAGTCTCGGTGCGGCCACGCCGTAAAACCCCCAACTTTTTTCTG???????????????????????????????????????
Fusarium_subglutinans_NRRL_22016                   ATCATTACCGAGTTTACAACTCCCAAACCCC-TGTGAAC-ATACCAATT--GTTGCCTCGGCGGATCAGCCCGCTCCCGGTAAAACGGGACGGCCCGCCAGAGGACCCC-TAAACTCTGTT---TCTA--TATGTAACTTCTGAGTAAAACCATA-AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCC-------AGCTTGGTGTTGGGACTCG---CGAG-----TCAAATCGCG------TTCCCCAAATTGATTGGCGGTCACGTCG-AGCTTCCATAGCGTAGTAGTAAAACCCTCGTTACTGGTAATCGTCGCGGCCACGCCGTTAAACCCC-AACTTCTGAATG---TTGACCTCGGATCAGGTAGGAATACCCGCTGAAC??
Gliocladiopsis_tenuis_IMI_300597                   ?????TACCGAGTTTACAACTCCCAAACCCC-TGTGAACT-TACC-TTTATGTTGCCTCGGCGG-C--GTCC---GC---TTCGGCG-----GCCCGCCAGAGGACCCAA-ACTCTTGT---ATTTGAATTGAGTATTCTCTGAGTGATAC-AAGCAATAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTACTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCC----GGGCTTGGTGTTGGAGATCGGCAACCGCCCCCTCGTGGGGTG-CGCCGCCTCCCAAATCTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATTCA--CCTCGCTCTGGAAC-GCGGCGCGGCCAAGCCGTTAAACCCCCCACTTCTGAA---GGTTGACCTCGGATCAGGTAGGACTACCCGCTGAACTT
Xenocylindrocladium_guianense_STEU_3396            ???ATTACCGAGTTTACAACTCCCAAACCCAATGTGAACTATACCTGTT-CGTTCCCTCGGCGG-T--GTCCGGCGC---TTCGGCG--AAGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT--TT-AGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAATTCCTCTTTTGGAATTGGTGTTGGGGATCGGCA-AGGCGTCCTTCGGGC-CGC-GCCGTCCCCCAAATTTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAAACGCGGCGCGGCCAAGCCGTTAAACCCCCAACTTTTTTTT--GTTTGACCTCGAATCAGGTAGGACTACCCGCTGAACTT
Xenocylindrocladium_guianense_STEU_3397            ??CATTACCGAGTTTACAACTCCCAAACCCAATGTGAACTATACCTGTT-CGTTCCCTCGGCGG-T--GTCCGGCGC---TTCGGCG--AAGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT--TT-AGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAATTCCTCTTTTGGAATTGGTGTTGGGGATCGGCA-AGGCGTCCTTCGGGC-CGC-GCCGTCCCCCAAATTTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAAACGCGGCGCGGCCAAGCCGTTAAACCCCCAACTTTTTTTT--GTTTGACCTCGAATCAGGTAGGACTACCCGCTGAACTT
Xenocylindrocladium_serpens_STEU_1144              ??CATTACCGAGTTTACAACTCCCAAACCCAATGTGAACTATACCTGTT-CGTTCCCTCGGCGG-T--GTTCGCTGC---TTCGGCA--GAGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATCT--TT-AGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGACGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAATTCCTCTTTTGGGATTGGTGTTGGGGATCGGCA-AGGCGACCTTCGGGC-CGC-GCCGTCCCCTAAATCTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAAACGCGGCGCGGCCAAGCCGTTAAACCCCCAACTTTTTTTTT-GTTTGACCTCGAATCAGGTAGGACTACCCGCTGAACTT
Xenocylindrocladium_subverticillatum_STEU_3397     ??CATTACCGAGTTTACAACTCCCAAACCCCATGTGAACTATACCTGTT-CGTTCCCTCGGCGG-C--GTTT-CTCC---CGAAAGG--GAGGCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT--TT-AGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAATTCCTCTTTTGGGATTGGTGTTGGGGATCGGCA-AGGCGACCTTCGGGC-CGC-GCCGTCCCCCAAATTTAGTGGCGGTCTCGCTGTAGCTTCCTCTGCGTAGTAATACA--CCTCGCTCTGGAGTCTTGGCGCGGCCACGCCGTTAAACCCCCAACTTTTTTTTT-GTTTGACCTCGAATCAGGTAGGACTACCCGCTGAACTT
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = ITS1_5.8S_ITS2_rDNA) = 
		N: 1-538;
CODONPOSSET  CodonPositions (CHARACTERS = ITS1_5.8S_ITS2_rDNA) = 
		N: 1-538;
END;