#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 17:00 GMT

TreeBASE (cc) 1994-2008

Study reference:
Polishook J., Ondeyka J., Dombrowski A., Peláez F., Platas G., & Teran A. 2001. Biogeography
and relatedness of Nodulisporium strains producing nodulisporic acid.
Mycologia, 93(6): 1125-1137.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S737]

BEGIN TAXA;
        TITLE  TaxonLabelSet10563;
        DIMENSIONS NTAX=13;
        TAXLABELS
            Nodulisporium_sp._5954
            Nodulisporium_sp._6230
            Nodulisporium_sp._6245
            Nodulisporium_sp._6246
            Nodulisporium_sp._6262
            Nodulisporium_sp._6263
            Nodulisporium_sp._6315
            Nodulisporium_sp._6321
            Nodulisporium_sp._6324
            Nodulisporium_sp._6377
            Nodulisporium_sp._6378
            Nodulisporium_sp._6379
            Nodulisporium_sp._6380
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2311]

	TITLE ITS;
	LINK TAXA = TaxonLabelSet10563;
	DIMENSIONS NCHAR=674;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                  10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670    ]
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Nodulisporium_sp._5954     CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGCT-GCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGTTGTCTGCCAAGAGCTATCATGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCATGAGCTGTCTTGGCAGGCACCTACCCTGTA--------------------------------------------GTGGTTGTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCG-TTAAACTCTTGCTTCTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCCGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATATCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
Nodulisporium_sp._6230     CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGCTGGCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGGTGTCTGCCAAGAGCTATCCTGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCAGGAGCTATATTGGCAGGCACCTACCCTGTA--------------------------------------------GTAGTTGTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCGGCTGAACTCTTGTCTTTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
Nodulisporium_sp._6245     CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGACACCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
Nodulisporium_sp._6246     CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGACACCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
Nodulisporium_sp._6262     CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGCT-GCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGGTGTCTGCCAAGAGCTATCCTGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCAGGAGTTATCTTGGCAGGCACCTACCCTGTAGTAGTTGTCTGCTAAGAGTTATCCTAGCAGGCACCTACCCTGTAGTAGTTGTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCG-TTAAACTCTTGCTTCTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCACTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
Nodulisporium_sp._6263     CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCTTCGGCGCGTGCTGCT-GCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGTTGTCTGCCAAGAGCTATCCTGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCAGGAGTTATCTTGGCAGGCACCTACCCTGTAGTAGTTGTCTGCTAAGAGTTATCCTAGCAGGCACCTACCCTGTAGTAGTTGTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCG-TTAAACTCTTGCTTCTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCACTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
Nodulisporium_sp._6315     CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGCT-GCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGTTGTCTGCCAAGAGCTATCATGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCATGAGCTGTCTTGGCAGGCACCTACCCTGTA--------------------------------------------GTAGTTGTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCG-TTAAACTCTTGCTTCTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATATCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
Nodulisporium_sp._6321     CATTAATGAGTTACTAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGCT-GCTACC-TGGAGCTACCCTGGAAGGCACCTACCCTGTAGTGGTTGTCTGCCAAGAGCTATCATGTCAGGCACCTACCTCTGTAGTGGTTGTCTGCCATGAGCTGTCTTGGCAGGCACCTACCCTGTAGTGGTTGTCTGCTAAGAGTTATCCTAGCAGGCACCTACCCTGTAGTAGTTGTCTACCATGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGAAGGACCG-TTAAACTCTTGCTTCTACAACTGTATCTCTGAACACGTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATATCTCTCGCTCGTGTGGTGGCCCTGGCTGCTGGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
Nodulisporium_sp._6324     CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGACACTTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCACTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCTTGTTGCTTAGCGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAATGGTTGACCTC
Nodulisporium_sp._6377     CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGACACCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCACTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCTTGTTGCTTAGCGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
Nodulisporium_sp._6378     CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGGCATCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCTTAGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
Nodulisporium_sp._6379     CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGGCATCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCACTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCTTTAAGCCCTGTTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTTAAAATCAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
Nodulisporium_sp._6380     CATTAATGAGTTACCAAACTCCAAAACCCTTTGTGAACCTTACCGTCGTTTCCTCGGCGCGTGCTGC-GGTTACCCTGTAGCTACCCTGG-AGACACCTACCCTGTAG---------------------------------------------------------------------------------------------------------------------------------------GT-GTCTACCCTGGAGCTACCCTGTAGCCGCGTGAAGGCCCGCCGCAGGACCA-TTAAACTCTTGTTTTTACAGCTGTATCTCTGAGTACTTAACTGAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTATTCGAGCGTCATTTCAACCCTTAAGCCCTATTGCTTAGTGTTGGGAGTCTACGGCTTCGGCGTAGTTCCTGAAAATTAGTGGCGGAGTTAGGGTACACTCTCAGCGTAGTAATCTCTCTCGCTTGTGTGGTGGCCCTGGCTGCTAGCCGTAAAACCCCCTATTTTCTAGTGGTTGACCTC
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = ITS) = 
		N: 1-674;
CODONPOSSET  CodonPositions (CHARACTERS = ITS) = 
		N: 1-674;
END;