TreeBASE Search-Matrix 23383 of study 16163

@ARTICLE{TreeBASE2Ref23485, author = {Dimuthu Sandarenu Manamgoda and Amy Y Rossman and Lisa A Castlebury and Hugo Madrid and Pedro W. Crous and Kevin D Hyde}, title = {The genus Bipolaris }, year = {2014}, keywords = {Brown spot of rice, field crop diseases, graminicolous fungi, helminthosporoid genera, molecular phylogeny, Pleosporales, Southern corn leaf blight, taxonomy}, doi = {}, url = {http://}, pmid = {}, journal = {Studies in Mycology}, volume = {}, number = {}, pages = {}, abstract = {The genus Bipolaris includes important plant pathogens with worldwide distribution. Species recognition in the genus has been uncertain due to the lack of molecular data from ex-type cultures as well as overlapping morphological characteristics. In this study, we revise the genus Bipolaris based on DNA sequence data derived from living cultures of fresh isolates, available ex-type cultures from worldwide collections and observation of type and additional specimens. Combined analyses of ITS, GPDH and TEF gene sequences were used to reconstruct the molecular phylogeny of the genus Bipolaris for species with living cultures. The GPDH gene is considered to be the best single marker for species of Bipolaris. Generic boundaries between Bipolaris and Curvularia are revised and presented in an updated combined ITS and GPDH phylogenetic tree. We accept 46 species in the genus Bipolaris and clarify the taxonomy, host associations, geographic distributions and species synonymies. Modern descriptions and illustrations are provided for 37 species in the genus and notes are provided when recent descriptions are available for the other taxa. Bipolaris chloridis, B. cynodontis, B. salviniae, B. victoriae and B. yamadae are epi- or neotypified and lectotypes are designated for B. hadrotrichoides and B. stenospila. Excluded and doubtful species are listed with notes on taxonomy and phylogeny. A taxonomic key is provided for the morphological identification of species within the genus. } }

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Matrix 23383 of Study 16163

Citation title: "The genus Bipolaris ".

Study name: "The genus Bipolaris ".

This study is part of submission 16163 (Status: Published).

Matrices

Title: Bipolaris

Rows

Taxon Label	Row Segments	Characters 1?–30
Bipolaris victoriae CBS327.64	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris victoriae DAOM147449	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris zeicola AR5166	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris zeicola AR5168	(none)	?ATGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris zeicola FIP532	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris zeae AR3795	(none)	?-----------------------------
Bipolaris zeae AR5181	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris zeae DAOM211267	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris microstegii AR4840	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris microstegii AR5192	(none)	?-TGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris eleusines CBS274.91	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris drechsleri FIP373	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris drechsleri AR4841	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris drechsleri MUS0028	(none)	?-------------?TTCAGCGGGTATCCC
Bipolaris sorokiniana CBS120.24	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris sorokiniana CBS110.14	(none)	?ATGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris sorokiniana MAF235500	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris sorokiniana MAFF238877	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris sorokiniana MAFF235501	(none)	?-TGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris sorokiniana MAFF236448	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris multiformis CBS480.74	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris multiformis FIP499	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris urochloae ATCC58317	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris melinidis BRIP12898	(none)	?----------------------------C
Bipolaris salviniae IMI228224	(none)	?-TTATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris yamadae CBS202.29	(none)	?-----------------------------
Bipolaris yamadae DAOM147441	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris yamadae MAFF235507	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris bicolor CBS690.96	(none)	?----------------------------C
Bipolaris cookei AR5185	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris cookei MAFF511191	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris cynodontis MUS003	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris cynodontis MUS002	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris cynodontis C1204	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris cynodontis CBS109894	(none)	?TTGATATGCTTAAGTTCATCGGGTATCCC
Bipolaris cynodontis ICMP6128	(none)	?----------------------------C
Bipolaris cynodontis MFU0090	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris cynodontis MFU0088	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris sacchari ICMP6227	(none)	?----TAAGCTTAAGTTCAGCGGGTATCCC
Bipolaris chloridis CBS242.77	(none)	?----------------------------C
Bipolaris oryzae AR3797	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris oryzae AR5204	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris panici-miliacei CBS199.29	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris oryzae MAFF235449	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris oryzae MMS0061	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris oryzae MKH0032	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris heveae CBS241.92	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris microlaenae BRIP 15613	(none)	?----------------------------C
Bipolaris maydis AR5182	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris maydis CBS136.29	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris maydis C5	(none)	?TTTGTATGCTTAAGTTCAGCGGGTATCCC
Bipolaris maydis C4	(none)	?-TGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris maydis AR5183	(none)	?ATGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris peregianensis DAOM221998	(none)	?TTGATATGCTTAAGTTCAGCGGGTATCCC
Bipolaris peregianensis BRIP12790Australia	(none)	?----------------------------C
Curvularia lunata CBS157.34	(none)	?-----------------------------

Columns

None of the columns has a description.