Matrix 2473 of Study 1169
Matrices
Title: ITS rDNA Phialocephala phylogeny - Menkis
Description: Legacy TreeBASE Matrix ID = M1833
Rows
Taxon Label | Row Segments | Characters 1?–30 |
---|---|---|
Phialocephala sp. 35 aurim1057 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1056 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1055 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1054 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1053 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1052 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1050 | (none) | ------GAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1049 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1048 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala dimorphospora aurim1068 | (none) | GGCCGTG-A----G--C--AAAA------- |
Phialocephala dimorphospora aurim1051 | (none) | ------------------------------ |
Phialocephala sp. 35 aurim1047 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim125 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 olrim362 | (none) | --------ACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 olrim58 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj42 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj41 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj40 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj38 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj37 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj34 | (none) | CC-GACGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj32 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj31 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj30 | (none) | CC-GCCGA-CACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj29 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj28 | (none) | ----ACGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj27 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj21 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj20 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj19 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj16 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj14 | (none) | CC-GACGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj12 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj11 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj8 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj7 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj5 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj3 | (none) | ------GAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj2 | (none) | CC-GACGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj1 | (none) | C--GACGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auv6 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auv2 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1096 | (none) | CCCGCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1059 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 olrim748 | (none) | ----------------C--AAA-C----GG |
Phialocephala sp. 35 olrim386 | (none) | -C-GACGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj24 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj23 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj15 | (none) | CC-GACGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 olrim542 | (none) | -----------CCGGTC--AAA-CGG--GG |
Phialocephala sp. 35 auv9 | (none) | -----------CCGGTC--AAA-C----GG |
Phialocephala sp. 35 auv5 | (none) | -----------CCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj9 | (none) | -----------CCGGTC--AAA-C----GG |
Phialocephala sp. 35 olrim395 | (none) | -----------CCGGTC--AAA-C----GG |
Phialocephala sp. 35 auj39 | (none) | -----------CCGGTC--AAA-C----GG |
Phialocephala sp. 35 olrim35 | (none) | -----------CCGGTC--AAA-C----GG |
Phialocephala dimorphospora aurim107 | (none) | ATCAGTGGAT-CCGG-CG------------ |
Phialocephala dimorphospora aurim380 | (none) | GGCCGTG-A----G--C--AAAA------- |
Phialocephala dimorphospora olrim315 | (none) | -------------G--CG------------ |
Phialocephala dimorphospora aurim1061 | (none) | ------GGAT--CGG-CG------------ |
Phialocephala dimorphospora olrim310 | (none) | ------GG----CGG--------------- |
Phialocephala dimorphospora aurim1067 | (none) | ----GTGGAT--CGG-CG------------ |
Phialocephala sp. 18 auv4 | (none) | CG---T------CG--CGTAA--------- |
Phialocephala sp. 18 auj36 | (none) | CG---T------CG--CGTAA--------- |
Phialocephala sp. 18 auv3 | (none) | CG---T------CG--CGTAA--------- |
Phialocephala sp. 18 auj18 | (none) | CG---T------CG--CGTAA--------- |
Phialocephala sp. 6 aurim648 38188 | (none) | -----TAC---CC----GTAAAACGGTGGG |
Phialocephala sp. 6 aurim648 2974 | (none) | CG--ATAC---CC----GTAAAACGGTGGG |
Phialocephala sp. 6 aurim648 49358 | (none) | CG--ATAC---CC----GTAAAACGGTGGG |
Phialocephala sp. 6 aurim648 2765 | (none) | CG--ATAC---CC----GTAAAACGGTGGG |
Phialocephala sp. 6 aurim648 32121 | (none) | CGATATAC---CC----GTAAAACGGTGGG |
Phialocephala sp. 6 aurim648 32114 | (none) | -----T-----CC----GTAAAACGGTGGG |
Phialocephala fortinii aurimTP4 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurimTP1 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurimNS44A | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim698 | (none) | -----CGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim695 | (none) | ----ACGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim669 | (none) | -----CGAAC---GCTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim647 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim646 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim641 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim617 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim616 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim606 | (none) | ----CCGAAC---GCTG---AA-CA--CGG |
Phialocephala fortinii aurim604 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim602 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim601 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii olrim321 | (none) | -----CGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim1177 | (none) | -----CGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim1153 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim115020 | (none) | --------------------AA-CAG-CGG |
Phialocephala fortinii aurim115019 | (none) | ----CCAAAC---GCTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim115018 | (none) | ------GAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim115017 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim115016 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim115015 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim115014 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim115013 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim115012 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim115011 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim115010 | (none) | -----CGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim11509 | (none) | -----CGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim11508 | (none) | -----CGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim11507 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim11506 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim11505 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim11504 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim11503 | (none) | -----CG-AC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim11502 | (none) | ------------------------------ |
Phialocephala fortinii aurim11501 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim1154 | (none) | -----CGAAC---GCTGG-AAA-CAG-CGG |
Phialocephala fortinii olrim283 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CTG |
Phialocephala fortinii auv10 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii auv12 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii auv8 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii olrim340 | (none) | -----CGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala fortinii aurim694 | (none) | -----CGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala sp. 35 auv1 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1069 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1066 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1065 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1064 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1063 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1062 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1060 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala sp. 35 aurim1058 | (none) | CC-GCCGAACACCGGTC--AAA-C----GG |
Phialocephala fortinii auv11 | (none) | -----CGAAC---GTTGGCAAA-CAG-CGG |
Phialocephala fortinii AY078144 | (none) | ----CCGAAC---GTTGG-AAA-CAG-CGG |
Phialocephala scopiformis AF486126 | (none) | ---GTG-AGCTC------------------ |
Phialocephala compacta AF486125 | (none) | ------------------------------ |
Phialocephala virens AF486132 | (none) | ------------------------------ |
Phialocephala fusca AF486122 | (none) | -------------------AA--------- |
Phialocephala xalapensis AF486128 | (none) | -------------------AA--------- |
Phialocepala fluminis AF486124 | (none) | -----------------GGA-------CC- |
cf Phialocephala fortinii Type1 AY078145 | (none) | ----CCGAAC---GCTGG-AAA-CAG-CGG |
Mycelium radicis atrovirens AF486120 | (none) | ----CCGAAC---GCTGG-AAA-CAG-CGG |
Phialocephala dimorphospora AF486121 | (none) | --------AC-----TCGTAAAA------- |
Leptodontidium orchidicola aurim623 | (none) | ---------------TCGGA---------- |
Phialophora finlandia aurim603 | (none) | ------------------CAA--------- |
Hymenoscyphus ericae aurim611 | (none) | ---------------TT--AAA-------- |
Columns
None of the columns has a description.