#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 17, 2024; 3:22 GMT TreeBASE (cc) 1994-2008 Study reference: Meyer B.S., Matschiner M., & Salzburger W. 2014. A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach. Molecular Phylogenetics and Evolution, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16660] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=45; TAXLABELS Altolamprologus_compressiceps Astatotilapia_burtoni Aulonocranus_dewindti Bathybates_graueri Boulengerochromis_microlepis Callochromis_macrops Ctenochromis_benthicola Ctenochromis_horei Cynotilapia_pulpican Cyphotilapia_gibberosa Cyprichromis_leptosoma Eretmodus_cyanostictus Gnathochromis_permaxillaris Grammatotria_lemairii Haplochromis_cf.stappersii Haplotaxodon_microlepis Julidochromis_ornatus Labidochromis_caeruleus Labrochromis_stone Lamprologus_callipterus Lepidiolamprologus_elongatus Limnochromis_abeelei Lobochilotes_labiatus Neochromis_rufocaudalis Neolamprologus_caudopunctatus Neolamprologus_modestus Neolamprologus_prochilus Neolamprologus_pulcher Neolamprologus_tetracanthus Ophthalmotilapia_ventralis Oreochromis_tanganicae Paralabidochromis_sp._rockkribensis Perissodus_microlepis Pseudocrenilabrus_philander Pseudotropheus_sp._acei Pundamilia_nyererei Rhamphochromis_esox Serranochromis_macrocephalus Tilapia_sparrmanii Trematocara_nigrifrons Tropheus_moorii Tylochromis_polylepis Variabilichromis_moorii Xenotilapia_spiloptera exGnathochromis_pfefferi ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M24949] TITLE Cichlids_GapsAsBinary; LINK TAXA = Taxa; DIMENSIONS NCHAR=167; FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 ] [ . . . . . . . . . . . . . . . . ] Altolamprologus_compressiceps 0000000010000100000001100000000100010000010000001000011000000000000?1?01?00100000000100100000011010010100000000010110?0100011?00101101110000000000000000010100000100000 Astatotilapia_burtoni 000000000000010000000110000000110001100001000000100001100000000000100001?001100000001011000100100100101001?0000001?0010000011?00001100110001000000000000100000000100001 Aulonocranus_dewindti 000001???000010000000110000000010001000000010000100001100000000001010?01?00100000000100100000011010010100000100001?0010000011?0000111?110000000000000000000000000100000 Bathybates_graueri 0010100000100110101?0110000000010001000001000000101001100000000000010?01?0010000000011000000001?11001010000000000010010000011?00010100010000000010000000000100000000010 Boulengerochromis_microlepis 000000000000000000000110000001010001000001000000100001100000000000010?01?0010000000011010000001101001010000000000010010000011?00000100010000000011??0000010100000100000 Callochromis_macrops 000001???000010000000110001?00010001000001010000100001100000000000010?01?0010000000010010?100011010010100000100101?0011?001????0001100110000000000000000010100?10100000 Ctenochromis_benthicola 000000000000010000000110000000110001000001000001000001100000000000010?01?00100000000100100000011010010100000000001?0010000011?00001100110000000000000000010100000100000 Ctenochromis_horei 001000000000010000000110000000110001100001000000100001100000000010100001?001100000001001000000110100101001?0000001?0010010011?00001100110000000000000000010000000101001 Cynotilapia_pulpican 000000000001??0000000110000000110001000001000000100001100000000000100101?001?1?000001001000000110100101001?0000001?0010000011?00001100110000000000000000110101?10101001 Cyphotilapia_gibberosa 100000000000010000000110000000110001000001000001000001100000000000010?01?00100000000000100000011010010100000000001?0010000011?00001100110000000000000000010110000100000 Cyprichromis_leptosoma 000000000000010000000110000000110001000001000000100011100000000100010?01?00100000000100100000011010010100000001001?0011?00011?00001100111000000000000001010100000100000 Eretmodus_cyanostictus 0000000000001?0000000110000000010001000000000010100001100000000000010?1??00100000000100100001?11010010101000000001?01?0000011?00001100110000000000000000010100000100001 Gnathochromis_permaxillaris 00000000000001000000011000000001000100000100000010000110?100000000010?01?00100000000100100000011010010100000000001?0010000011?00001100110000001000000000010100000100000 Grammatotria_lemairii 000000000000010000000110001?00010001000001000000100001100000000000010?01?00100000000100100000011010010100000100001?0010000011?0000111?11000000000000000001010000010?100 Haplochromis_cf.stappersii 000000010000010000000110000000110101000001001000100001100000000000100101?001?1?00000100100000011010000000000000001?0010000011?00001100110100000000000000110100001111001 Haplotaxodon_microlepis 000000000000010000000110000000010001000001000000100001100000000000010?01?00000000010100101000011010010100000000001?0010000011?00001100110000000000000000010100000100000 Julidochromis_ornatus 0000000000000100000001100001000000000000010000001000011000000000000?1?01?00100100000100100000011010010100000000001?10?0100011?00001101110000000000000000010100000100000 Labidochromis_caeruleus 000000000001??0000000110000000110001000001000000100001100000000000100101?001?1?000001001000000110100101001?0000001?0010000011?00001100110000000000001000110101?10101001 Labrochromis_stone 000000000000010000000110000000110101000001001000100001100000000000100101?001?1?000001001000000110100101001?0000001?0010000011?00001100110100000000000000110101101111001 Lamprologus_callipterus 0000000000000100010001100000000100010000010000001000011000000000000?1?01?00100000000100100000011010010100000000010110?0100011?00101101110000000000000000000000000100000 Lepidiolamprologus_elongatus 0000000001000100000001100000000100010000010000001000011000000000000?1?01?001000000001001000000110101?0100000000010110?0100011?00101101110000000000000000000000000100000 Limnochromis_abeelei 000000000000010000001110000000010001000001000000100001101000000000010?01?00100000000100100000011010010100000000001?0010000011?00001100110000000000000000010100000100000 Lobochilotes_labiatus 001000100000010000000110000000110001000001000000100001100000000000100001?001100000001001000000110100101001?0000001?0010000011?00001100110000000000000000000000000101001 Neochromis_rufocaudalis 000000000000010000000110000000110101000001001000100001100000110000100101?001?1?000001001000000110100101001?0000001?0010000011?00001100110100000000000000110101101111001 Neolamprologus_caudopunctatus 0001000001000100000001100000000100010000010000001000011000000000000?1?01?00100000000100100000011010010100000000010110?0100011?00101101110000000000000000010100000100000 Neolamprologus_modestus 0000000001000100010001100000000100010000010000001000011000000000000?1?01?00100100000100100000011010010100001000001?0010100011?00101101110000000000000100010100000100000 Neolamprologus_prochilus 0000000001000100000001100000000100010000010000001000011000000000000?1?01?00100000000100100000011010010100000000000110?0100011?00001100110000000000000000010100000100000 Neolamprologus_pulcher 0000000000000100000001100000000100010000010000001000011000000000000?1?01?00100001000100100000011010010100000000001?0010100011?00001101110000100000000000010100000100000 Neolamprologus_tetracanthus 0000000001000100010001100000000100010000010000001001011000000000000?1?01?00100001000100100000011010010100001000000110?0100011?00001101110000000000000000010100000100000 Ophthalmotilapia_ventralis 000001???000010000000110000000010001000001010000100001100000000001010?01?00100000000100100000011010010100000100001?0010000011?0000111?110000000000010000010100000100000 Oreochromis_tanganicae 01000000000000000001000100000001001?001001000100100001100000000000010?0001?10000000010010000001101001011000000000010010000010?10000100010010000000000000000000000000000 Paralabidochromis_sp._rockkribensis 000000000000010000000110000000110101000001001000100001100000110000100101?001?1?000001001000000110100101001?0000001?0010000011?00001100110100000000000000110101101111001 Perissodus_microlepis 000000000000010000000110000000010001000001000000100001100000000000010?01?00000000010100101000011010010100000000001?0010000011?00001100110000000000000000010100000100000 Pseudocrenilabrus_philander 000000000000000000000110000000010001010001000000100001110010000000100001?00110000000100100000011010010100000000001?0010001011?00001100110000000000000000010100000101001 Pseudotropheus_sp._acei 000000000001??0000000110000000110001000001000000100001100000000000100101?001?1?000001001000000110100101001?0000001?0010000011?00001100110000000000000000110101100101001 Pundamilia_nyererei 000000010000010000000110000000110101000001001000100001100000000000100101?001?1?000001001000000110100101001?0000001?0010000011?00001100110100000000000000110101101111001 Rhamphochromis_esox 000000000001??00000001100000001100010000010000001000011000000000000000000001?1?000001001000000110100101001?0000001?0010000011?00001100110000000000000000000000000101001 Serranochromis_macrocephalus 000000000000000100000110000000010001000011000000100001100001000000000000000110000000100100000011010010100000000001?0010000011?00001100110000000000000000110101100101001 Tilapia_sparrmanii 001000000000010000000110000000010001000001000000100001100000000000010?01?0010000000010010000001101001000000000000000010000010100000100110000000000000000000000000100000 Trematocara_nigrifrons 00100000001001001000011000000000000100000100000011?001100000001000010?0010010000000011010000011101000000000000000010010000011?01???100010000000010000010010100000100010 Tropheus_moorii 000000000000010000000110000000110001100001000000100001100000000000100001?001100000001001100000110100101001?0000001?0010000011?00001100110000000000000000011000000101001 Tylochromis_polylepis 000000000000000000000100110010011000000100100000000000000000000000010?0000110001000110010000000100100110001001000010000000000000000000000010010100000000000000000100000 Variabilichromis_moorii 0000000000000100000001100000000000000000000000001000011000000000000?1?01?00100000100100100000011010010100001000001?0010100011?00101101110000000000000000010100000100000 Xenotilapia_spiloptera 000000000000000000000110000000010001000001010000100001100000000001010?01?00100000000100100000011010010100000100001?0011?00011?00001100110000000000000000010100?10100000 exGnathochromis_pfefferi 000000000000010000000110000000110001100001000000100001100000000010100001?001100000001001000000110100101001?0000001?0010000011?00001100110000000000100000011000000101000 ; END;