@ARTICLE{TreeBASE2Ref16602,
author = {Patrick Brandon Matheny and Y. L. Liu and Joseph F. Ammirati and Benjamin D. Hall},
title = {Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales)},
year = {2002},
keywords = {Agaricales; Inocybe; molecular phylogeny; nuclear large subunit ribosomal DNA; RNA polymerase II; RPB1},
doi = {},
url = {http://www.amjbot.org/cgi/content/abstract/89/4/688},
pmid = {},
journal = {American Journal of Botany},
volume = {89},
number = {4},
pages = {688?698},
abstract = {An investigation of mushroom phylogeny using the largest subunit of RNA polymerase II gene sequences (RPB1) was conducted in comparison with nuclear ribosomal large subunit RNA gene sequences (nLSU) for the same set of taxa in the genus Inocybe (Agaricales, Basidiomycota). The two data sets, though not significantly incongruent, exhibit conflict among the placement of two taxa that exhibit long branches in the nLSU data set. In contrast, RPB1 terminal branch lengths are rather uniform. Bootstrap support is increased for clades in RPB1. Combined data sets increase the degree of confidence for several relationships. Overall, nLSU data do not yield a robust phylogeny when independently assessed by RPB1 sequences. This multigene study indicates that Inocybe is a monophyletic group composed of at least four distinct lineages?subgenus Mallocybe, section Cervicolores, section Rimosae, and subgenus Inocybe sensu K?hner, Kuyper, non Singer. Within subgenus Inocybe, two additional lineages, one composed of species with smooth basidiospores (clade I) and a second characterized by nodulose-spored species (clade II), are recovered by RPB1 and combined data. The nLSU data recover only clade I. The genera Astrosporina and Inocybella cannot be recognized phylogenetically. "Supersections" Cortinatae and Marginatae are not monophyletic groups.}
}
Matrix 249 of Study 828
Citation title:
"Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales)".
This study was previously identified under the legacy study ID S686
(Status: Published).
Matrices
Title: 21 nLSU RPB1 exon RPB1 intron 2
Description: Legacy TreeBASE Matrix ID = M1078
Rows
|
Taxon Label |
Row Segments |
Characters 1?–30 |
| Phaeomarasmius curcuma |
(none)
|
TTTATCGTGAAAGTGAAGAAGATACTGGAG |
| Inocybe stellatospora |
(none)
|
TTCCTCGTCAAAGTGAAGAAAATTCTGGAG |
| Inocybe abietis |
(none)
|
TTCATTGTAAAAGGGAAGAAAATTCTGGAG |
| Inocybe sp. PBM1615 |
(none)
|
TTCCTCGTAAAAGTGAAAAAGATTTTGGAG |
| Inocybe sp. Nothofagus |
(none)
|
TTCCTTATAAAAGTGAAGAAAATTCTGGAG |
| Inocybe serpitocystis |
(none)
|
TTTCTCATAAAAGTGAAGAAGATTTTGGAG |
| Inocybe relicina |
(none)
|
TTCCTTGTAAAAGTGAAGAAAATTTTGGAG |
| Inocybe pudica |
(none)
|
TTCCTTGTAAAAGTGAAGAAAATTTTGGAG |
| Inocybe praetervisa |
(none)
|
TTCATTGTCAAAGGGAAGAAAATTCTGGAG |
| Inocybe maculata |
(none)
|
TTTCTCGTGAAAGTGAAGAAAATTTTGGAG |
| Inocybe leptophylla |
(none)
|
TTCCTTGTCAAAGTAAAGAAAATTCTGGAG |
| Inocybe lanuginosa |
(none)
|
TTCATTGTCAAAGTAAAGAAGATTCTGGAG |
| Inocybe lacera |
(none)
|
TTCCTTGTAAAAGTGAAGAAAATTTTGGAG |
| Inocybe hirsuta v maxima |
(none)
|
TTTCTTGTGAAAGTGAAGAAGATTTTGGAG |
| Inocybe godeyi |
(none)
|
TTCATTGTAAAAGTGAAGAAAATTCTGGAG |
| Inocybe dulcamara |
(none)
|
TTCCTTGTCAAAGGAAAAAAGATTTTGGAG |
| Inocybe corydalina |
(none)
|
TTCCTTGTGAAAGTGAAGAAAATTCTGGAG |
| Inocybe calospora |
(none)
|
TTCATTGTCAAAGTGAAGAAGATTTTGGAG |
| Inocybe agglutinata |
(none)
|
TTCCTTGTAAAAGTGAAGAAAATTTTGGAG |
| Hebeloma olympianum |
(none)
|
TTCATTGTGAAAGTAAAGAAGATTCTGGAG |
| Galerina semilanceata |
(none)
|
TTCATTGTAAAAGTGAAGAAGATATTGGAG |
Columns
None of the columns has a description.
Go to search
Citation
Taxa
Matrices
Trees
Analyses
