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Matrix 2521 of Study 1194

About Citation title: "Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildew fungi with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data.".
About This study was previously identified under the legacy study ID S1102 (Status: Published).

Matrices

Title: Bayesian trees Figs. 2-3

Description: Legacy TreeBASE Matrix ID = M1884

Rows

Taxon Label Row Segments Characters 1?–30
Paraperonospora leptosperma Anthemis arvensis HV707  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Paraperonospora leptosperma Matricaria chamomilla HV929  (none) ??????????????????????ATGAGCTC
Paraperonospora leptosperma Tripleurospermum perforatum HV383  (none) ??????CGGCGAGTGAAGCGGGATGAGCTC
Plasmopara isopyri-thalictroidis Isopyrum thalictroides HV266  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara baudysii Berula erecta HV571  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara baudysii Berula erecta HV557  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara pygmaea Anemone ranunculoides HV295  (none) ?????????????????????????????C
Basidiophora entospora Conyza canadensis F8  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Basidiophora entospora Conyza canadensis HV123  (none) TAGTA-CG-CGAGTGAAGCGGGATGAGCTC
Plasmopara solidaginis Solidago virgaurea HV1093  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara angustiterminalis Xanthium strumarium HV562  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara halstedii s.l. Flaveria bidentis AR179  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara halstedii s.l. Helianthus annuus HV921  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara halstedii s.l. Helianthus annuus AR151  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Lactuca serriola AR357  (none) TAGTAACGGCGAGTGAAGGGGGATGAGCTC
Bremia lactucae Lactuca sativa HV B.l.h  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Lactuca sativa AR246  (none) ??????CGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Picris hieracioides HV656  (none) TAGTA{AG}CGGC{CG}AGTGAAGCGGCAT
Bremia lactucae Taraxacum officinale HV779  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Crepis taraxacifolia F5  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Crepis taraxacifolia F11  (none) ??????CGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Lapsana communis AR183  (none) ????????GCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Lapsana communis HV392  (none) ??????????????????????ATGAGCTC
Bremia lactucae Lapsana communis AR180  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Crepis sancta F21  (none) ??????CGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Urospermum dalechampii F14  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Sonchus asper HV754  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Sonchus tenerrimus F30  (none) ???????????????????????TGAGCTC
Bremia lactucae Sonchus oleraceus HV759  (none) ???????GGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Centaurea montana HV586  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Cirsium vulgare HV835  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Leontodon hispidus HV769  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Hieracium murorum AR234  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Hieracium cf. murorum HV628  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Hieracium murorum HV511  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Carduus nutans HV232  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Cirsium oleraceum HV704  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Cirsium arvense HV778  (none) ???????GGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Carduus personata HV653  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Centaurea cyanus HV197h  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Cirsium acaule MG3  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Centaurea cf. pullata F31  (none) ?????????????????????GATGAGCTC
Bremia lactucae Arctium sp. AR388  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Bremia lactucae Senecio vulgaris HV750  (none) ?????????????????????????????C
Bremia lactucae Centaurea jacea HV526  (none) ??????????????????????ATGAGCTC
Bremia lactucae Centaurea cf. jacea AR264  (none) ??????????????????????ATGAGCTC
Bremia lactucae Carlina acaulis HV482  (none) TAGTAACGGCGAGTGAACGGGTATGAGCTC
Plasmopara geranii Geranium maculatum HV6.4.P.P.  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara geranii-sylvatici Geranium sylvaticum AR285  (none) ??????????????????????????????
Plasmopara geranii-sylvatici Geranium palustre HV932  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara pusilla Geranium pratense HV619  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara pusilla Geranium pratense AR200  (none) TAGTAACGGCGAGTGAAGCGG{AG}ATGAG
Plasmopara pusilla Geranium pratense MG8 10  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara pusilla Geranium pratense MG5 2  (none) ?????????????????????????????C
Plasmopara sii Sium latifolium HV550  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara chaerophylli Anthriscus sylvestris HV1059  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara chaerophylli Anthriscus cerefolium HV262  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara chaerophylli Anthriscus nitidus HV1045  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara umbelliferarum Aegopodium podagraria AR233  (none) TAGTA{AC}CGGCGAGTGAAGCGGGATGAG
Plasmopara umbelliferarum Aegopodium podagraria AR83  (none) ???????????????????????TGAGCTC
Plasmopara umbelliferarum Aegopodium podagraria AR230  (none) ??????????????????????????????
Plasmopara mei-foeniculi Meum athamanticum AR284  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara angelicae Angelica archangelica HV1099  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara pimpinellae Pimpinella sp. MG4  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara pastinacae Pastinaca sativa HV1090  (none) ???????????AGTGAAGCGGGATGAGCTC
Plasmopara pimpinellae Pimpinella sp. MG7  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara pimpinellae Pimpinella major HV634  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara angelicae Angelica sylvestris MG2  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara peucedani Peucedanum palustre AR277  (none) ?????????????????GCGGGATGAGCTC
Plasmopara angelicae Angelica sylvestris AR198  (none) ??????????????????CGGGATGAGCTC
Plasmopara pimpinellae Pimpinella major MG1  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara sphaerosperma Tragopogon orientalis AR260  (none) ??????????????????????????????
Plasmopara sphaerosperma Tragopogon orientalis HV1049  (none) TAGTAACGGCGAGTGAAGCGGGAAGAGCTC
Phytophthora nicotianae AR238  (none) TAGTA-CGGCGAGT-AAGCGGAAAGAGCTC
Phytophthora infestans AR69  (none) TAGTAACGGCGAGTGAAGCGGGAAGAGCTC
Plasmopara pygmaea Anemone nemorosa F2  (none) ??????????????????????????????
Plasmopara pygmaea Hepatica nobilis AR387  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara pygmaea Anemone ranunculoides AR86  (none) TAGTAACGGCGAGTGAAGCGGGAAGAGCTC
Plasmopara obducens Impatiens noli-tangere HV306  (none) ?????ACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara wildemanniana Hypoestes sp. AR324  (none) ??????????????????????ATGAGCTC
Plasmopara obducens Impatiens capensis HV5.4.P.O.  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara skvortzovii Abutilon theophrasti AR306  (none) ???????????????????????TGAGCTC
Plasmopara epilobii Epilobium parviflorum HV988  (none) ??????CGGCGAGTGAAGCGGGATGAGCTC
Plasmopara densa Euphrasia rostkoviana MG5  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara densa Rhinanthus minor HV72  (none) ??????????????????????????????
Plasmopara densa Rhinanthus alectorolophus MG6 1  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara megasperma Viola rafinesquii HVB.M.4.4.  (none) ????????GCGAGTGAAGCGGGAAGAGCTC
Plasmopara viticola Vitis vinifera HV225  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara viticola Vitis vinifera AR160  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara viticola Vitis vinifera AR391  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara sp. Geranium sylvaticum HV473  (none) TAGTAACGGCGAGTGAAGCGGGATGAGCTC
Plasmopara sp. Geranium sylvaticum AR399  (none) ??????????????????????????????

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