#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 13, 2024; 6:10 GMT TreeBASE (cc) 1994-2008 Study reference: Bakkeren G., Kronstad J., & Levesque C. 2000. Comparison of AFLP fingerprints and ITS sequences as phylogenetic markers in Ustilaginomycetes. Mycologia, 92: 510-521. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S642] BEGIN TAXA; TITLE ITS_data; DIMENSIONS NTAX=15; TAXLABELS Puccinia_caricina_#U88234 Sporisorium_reilianum Tilletia_indica_#11 Tilletia_walkeri_#M96442 'Ustilago aegilopsidis #4327 MAT-1' 'Ustilago avenae #A-60 MAT-1' 'Ustilago bullata #B-249 MAT-2' 'Ustilago hordei 316 #14.1 MAT-2' 'Ustilago hordei 362 #4854 MAT-2' 'Ustilago kolleri #K-45 MAT-1' Ustilago_maydis_#521_a1b1 'Ustilago nigra #83-138 MAT-2' 'Ustilago nuda #96-253' 'Ustilago scitaminea #5 MAT-2' 'Ustilago tritici #T-2' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2584] TITLE 'ITS1-5.8S rRNA-ITS2'; LINK TAXA = ITS_data; DIMENSIONS NCHAR=805; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Puccinia_caricina_#U88234 CC-TGC-A--GAAGGATCATTATTTAAACAAGAGT-GCACTTAATTGTGGCTC-AACCTTTTTATAA--TTTCACCCCAACACTTGGTTGTGTGATAGAACTTGTTTTTGTCATTGCAATCAGGT--AGAAGTAACACTTTTG-------TT--GCATT---ACCCCCCCTCAATTATTTTAA---AACACAAGT--------T--GAA--TT--AAG----AATG---------------TAAAA--TTTTG-----------AT---AAATTGAAATAACTTTTAACTTTTAACAATGGATCTCTTGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATCCAGTGAATCATTGAATCTTTGAACGCATCTTGCACCTTTTG-----GTATTCCAAAAGGTACACCTGTTTGAGTGTC-ATGAAAATCT---CTCACA---A-----------------ATTAATT---TTTGGTGGATG-----TTGAGTGTTGCTGCTATCTA-----GCTCAGTTTAAATATATAAGTCTCATTCTACATGT-TG------GATTGACTTGGTGT-AAT-ATTT----------AATTTTTT-TTTCATCAA--GGATT-AG----TAGCAATACT----------TGCCAATGTTT-------TAGAAC------AGGGAC--TGCT------AAACCCATTATAA------T--T--CTT--------------TTTTTTTAT----A---AG------------ACCTCAAATCAGGTGGGAC Sporisorium_reilianum CATTTCGA-TGAAAAAACCTTTTTTTCTGAGGTGCGGCCCGCACCTGTCCAACTAAACTAGGGCTACTTTTTT----CAACAC---------GGTTGCATC--GGTTGGGTTGGGTCGAGCGAGT--TTTC--------GGA---------CTCGT------GAGGCCGGCCTGACAACTTAACAAAACACTTTT-GATGATCTAGGAATTTTGAAAG--------TC-TATCTT------TGAA--CGGCTGGTAATGCGGTCGTCTAAAAATGGAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACC-CA-CGCTTTTTTA--AGT---AAA-------GGCGTGCGGGATCGG-TAGTGAGGG--T-TGCCATTCACCGTGGCTCGCTCGAAATGCATTAGCGCATCCATTGAATTGAGGC-AAAGACGGACGAAGGCTCGC--CTTT------------CGCTCTCTCTTCCTTGCCGGGTTTTGATACTATCAGGGCTTCGGAG--GCGGAGAGAGGGCATG-AGCTGG-ACGC---GAC-GACTTTGTCGGTTGGAAGTGCTTCTGAACCCCGCC-----------------TTTGGCATTTATTTGCCAA---AGGAA-------TTAATTCAA---A--TCGGCC Tilletia_indica_#11 CC-TGC-A--GAAGGATCATTAGTGAATTACG-GA-GCTCTT--CTTCGGAAG-AGTCTCCTTCT-C--TTTTATCCCAACACCAAACTAC-GGAAGGAACGAGGCCTTG-CGCTGAGTACCTGTCCGGATGGAACAGAGTTGCTGGTACTTCGGTATTGGCAGCGCTGCTCCAACCCTTTTA---AACAC---T--------TAAGAA--TT-AAAG----AATG---------------TTAAAGCTATTG--TCTTCGGACAT---AAACT--AATA---TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGG-----GTATTCTCAAGGGCATGCCTGTTTGAGTGTC-ATAATACTCTCAACTCTCA---ATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGT-GATGGGCGCTTGCCAGATGTAACAGTCTT-----GCTCGCCTTAAATTAATCAGTGGATCTCTTCGAGTCCG------GTCTGACTATGTGT-GATAATTTGATCACATAGAATGTGCT-TGTCA-CAACCGGATTCTG----TATAGAGGCT---------CTGC-------T-------TCCAAC------ACGGAA--TG----------ATTCTTCGGAA------TCAT--CGA--------------TAGCTTTGT----AGCTTG------------ACCTCAAATCAGGTAGGAC Tilletia_walkeri_#M96442 CC-TGC-A--GAAGGATCATTAGTGAATTACG-GA-GCTCTT--CTTCGGAAG-AGTCTCCTTCT-C--TTTTATCCCAACACCAAACTAC-GGAAGGAACAAGGCCTTG-CGCTGAGTACCTGTCCGGATGGAACAGAGTTGCTAGTACTTCGGTATTGGCAGCGCTGCTCCAACCCTTTTA---AACAC---T--------TAAGAA--TT-AAAG----AATG---------------TTAAAACTATTG--TCTTCGGACAT---AAACT--AATA---TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGG-----GTATTCTCAAGGGCATGCCTGTTTGAGTGTC-ATAATACTCTCAACTCTCA---ATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGT-GATGGGCGCTTGCCAGATGTAACAGTCTT-----GCTCGCCTTAAATTAATCAGTGGATCTCTTCGAGTCCG------GTCTGACTATGTGT-GATAATTTGATCACATAGAATGTGCT-TGTCA-CAACCGGATTCTG----TATAGAGGCT---------CTGC-------T-------TCCAAC------ACGGAA--TG----------ATTCTTCGGAA------TCAT--CGA--------------TAGCTTTG-----AGCTTG------------ACCTCAAATCAGGTAGGAC 'Ustilago aegilopsidis #4327 MAT-1' CATTTCGA-TGAAAAACC-TTTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAGTTTATTTTTATTTTATTATTATAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago avenae #A-60 MAT-1' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACAA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG-----------TTTTTTTTTTTAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago bullata #B-249 MAT-2' CATTTCGA-TGAAAACCC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACCTTTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTTGCGTCTGCTGGGCGACGGACGGACAATTTTATTTAACACTTTTGGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGGAAAAA-------G-GTTGACGGATCGG-TATTGAGGGGTTTTGCCATTTACCGTGGCTCCCTCGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTGG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG--------------TTTTTTTTAGGAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago hordei 316 #14.1 MAT-2' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG------TTTATTTTATT-TTATAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago hordei 362 #4854 MAT-2' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG------TTTATTTTATT-TTATAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago kolleri #K-45 MAT-1' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAGGTCATTTTTACAA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG-----------TTTTTTTTTTTAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC Ustilago_maydis_#521_a1b1 CATTTCGA-TGAAAAACCTTTTTTTTCTGAGGTGTGGCTCGCACCTGTCCAACTAAACCTGAGCTACCTTTTTTATATAACAC---------GGTTGCATC--GG-TCGGTCTGTCGAAACCAGTAGCG-CTCAT----AGCGAGCA-----GCGTCTGGGGAAAGACGGGTCGGCGCTTCTTACCAACACTTTT-GAACA-CTAGGA--TTGGAAGGACAAAAA-TCATTTTTTTGATGATGGAAGCGACTGGTAATGCGGTCGTCT-AAATTGAAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATTTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGCTTTTTTTTCTTGTTGAGAAA-------GAGCTGGCGGATCGG-TAGTGAGGGTCTCTGCCATTTACCGTGGCTCCCTCGAAATGCATTAGCGCATCCATTGGA---AGGCGGAAGACGGACGAAAGCTCGAGTTTTT------------TGCCCTCGCTTCCCTGCCGGGTTTTGATAATGTCAGGACTTCGGAG-CGAAGAG-A-GGGCG-GGAGCTGGAACGCACGAACTT-TTCTGCTGTTTGGGCGTGCTTCTGAACCCCGCCCATGCC----------------TCTTGCTTTACCCCAGAAGGAAGGGATTTATTTTTCAATTCA--TCGGCC 'Ustilago nigra #83-138 MAT-2' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG------TTTATTTTATT-TTATAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago nuda #96-253' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGC-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTATCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG-------------TTTTCTTTTAGAAAGCTAGGAAGGAATTTATAAT--AATTCA--TCGGCC 'Ustilago scitaminea #5 MAT-2' CATTTCGAGTGAAA--CC--TTTTTTCCGAGGTGTGGCTCGCACCTGTCTAACTAAACT-GGGCTACCTATTT----CAACAC---------GGTTGCATC--GGTTGGGTCTG--CCAAACAGT--GCACGAAA----GTA---------CCTGT------GGAGGCAGCCCGATAATCTACCAAAACACTTTT-GATGGTCTAGGA--TTTGAAAG-----------TATTTAACAT--TTTA--CGACTGGTAATGCGGTCGTCTAAAATCTAAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGCAGATCTAATCTGGGGAGCATGCCTATTTGAGGGCCGCGAATTGTTTCGAACG-CA-CGCTTTTTTATTACG---AAA-------GAGCTGGCGGATCGG-TAGTGAGGGTTT-TGCCATTTACCGTGGCTCCCTCGAAATGCATTAGTGCATCCATTTGA--CAGGC-AAAGACGGACGAAGGCTCGA--CTTT------------TGGCCCATCTTCCCTGCCAGGTTTTGATAATATCAGGACTTTGGTG--G-TGAGGATGAGCAAGAAGCTGG-ACGC---GACGGCCTTTGCTGATTGG-AGTGCTTCTGAACACCGCCCTAGCTAA----TTTTTTATTTTATTTTTTTGGCTA---GGGAA--------TAATTCAA---A--TCGGCC 'Ustilago tritici #T-2' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACCTTTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACGGACAATTTTATTTAACACTTTTGGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTCGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTGG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG----------------TTTTTTAGGAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'ITS1-5.8S rRNA-ITS2') = N: 1-805; CODONPOSSET CodonPositions (CHARACTERS = 'ITS1-5.8S rRNA-ITS2') = N: 1-805; END;