#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 7:43 GMT

TreeBASE (cc) 1994-2008

Study reference:
Popp M., Eggens F., Erixon P., & Oxelman B. 2004. Origin and evolution of a circumpolar
polyploid species complex in Silene (Caryophyllaceae). Systematic Botany,
null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1253]

BEGIN TAXA;
        TITLE  ITS;
        DIMENSIONS NTAX=21;
        TAXLABELS
            Silene_ajanensis_RM
            Silene_baccifera
            Silene_involucrata_Sv
            Silene_involucrata_Sw
            Silene_involucrata_WG
            Silene_keiskei
            Silene_linnaeana_M
            Silene_nigrescens
            Silene_nivalis
            Silene_ostenfeldii_A
            Silene_parishii
            Silene_rotundifolia
            Silene_schafta
            Silene_sorensenis_EG
            Silene_sorensenis_WG
            Silene_uralensis_A
            Silene_uralensis_EG
            Silene_uralensis_M
            Silene_uralensis_Sw
            Silene_uralensis_WG
            Silene_zawadskii
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2655]

	TITLE ITS_rDNA;
	LINK TAXA = ITS;
	DIMENSIONS NCHAR=871;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                 10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880   ]
[                                  .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .   ]
Silene_ajanensis_RM       ------------------------------------------------------------ACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGTGTAGGGGCGTCGCTCGGTGCCTCGTGTGCC-GGCCCGTCCC-TCTCCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTGTTTCCCCGGCAAACCAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGCGTGCTCTCCCGTCGCCCGGTCAGCCGGGCGTCGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTAAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGCGACTCGCCGGTCGCGGCTGGCCTAAAATTGGAGCCCCCGGCGTCTGGATGCCGTGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGCGCGTCACGATGCCAACGTGAGCTCGAAGGACCCTTTTA-GCTGCCT-AGCGGCAGCCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAA------------------------------------------------------------------C
Silene_baccifera          --------------------------------------------------------------------------------------------------------------------------------------TCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAAACCACATGGGTGTTG??GCGTTGCTCGGTGCCTCGTGTGCT-TCCTCGTCCC-TCTCCCAAGCT-GGGGGAGCGC{CT}CACTTGTGGGTTGCTTCCCTGGCAAAACAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACTTTATGTGTGTACCCTCCCGTTGCCCGGTTAGCCGGGCGTTGGAGTGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGCGACTCACCGGTCGCGGCTGGCCTAAAATTGGAGCCCTCGGCATCGGGATGCTGCGGCGATAGGTGGTGAACAAGGCCTTGGCCGAGCAAGCAACCCGTCGCGCATCGCCATGCCAATGTGAGCTCGAAGGACCCTTTGATGTTGCCT-AATAGCAACCAAACCTTTGCGACCCC------------------------------------------------------------------------------------------------C
Silene_involucrata_Sv     GAAGTGCTTCGGATCGCGGCGACGTGGGCGGTTCGCCGCCGACGACGTCGCGAGAAGTTCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACATGTTCAA-CCTCGTGGGTGTAGGGGCGTTGCTCGGTGCCTCGTGTGCC-GGCCCGTTCC-TCTCCTAAGCC-GGGGGAGCGCTCACTTGTGGGCTCTTTCCCCGGCAAAACAACGAACCCCGGCGTGTAA-TGCGTCAAGGAATACAAACATTATGTGCGTGCTCTCCCGTCGCCCGGTCAGCCGGGCGTCGGGGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTAAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGCGACTCGCCGGTCGCGGCTGGCCTAAAATTGGAGCCCCCGGCGTCTGGATGCCGTGGCAATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGCGCGTCTCGATGCCAAGGTGAGCTCGAAGGACCCTTTTA-GCTGCCT-AGCGGCAACCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCC-----------------------C
Silene_involucrata_Sw     -----------------------------------------------------------------------------------AGGAGAAGTCGT{AT}ACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACATGTTCAA-CCTCGTGGGTGTAGGGGCGTTGCTCGGTGCCTCGTGTGCC-GGCCCGTTCC-TCTCCTAAGCC-GGGGGAGCGCTCACTTGTGGGCTCTTTCCCCGGCAAAACAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGCGTGCTCTCCCGTCGCCCGGTCAGCCGGGCGTCGGGGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTAAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGCGACTCGCCGGTCGCGGCTGGCCTAAAATTGGAGCCCCCGGCGTCTGGATGCCGTGGCAATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGCGCGTCTCGATGCCAAGGTGAGCTCGAAGGACCCTTTTA-GCTGCCT-AGCGGCAACCTAACCGTTGCGACCC-------------------------------------------------------------------------------------------------C
Silene_involucrata_WG     -------TTCGGATCGCGGCGACGTGGGCGGTTCGCCGCCGACGACGTCGCGAGAAGTTCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCTAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGTGTAGGGGCGTCGCTCGGTGCCTCGTGTGCC-GGCCCGTCCC-TCTCCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTCTTTACCCGGCAAAACAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGCGTGCTCTCTTGTCGCCCGGTCAGCCGGGCGTCGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTAAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCGCCGGTTGCGGCTGGCCTAAAATTGGAGCCCCCGGCGTCTGGATGCCGTGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGCGCATCACGATGCCAAGGTGAGCTCGAAGGACCCTTTTA-GCTGCCT-AGCGGCAACCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAC
Silene_keiskei            -----------------------------------------------------------------------------------AGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGTGTTGGGGCGTCGCTCGGTGCCTCGTATGCC-GGC-CGTCCC-TCACCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTGCTTCTCCGGCAAAACAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGCGTACTCTCCCGTCGCCCGGTCAGCCGGGCGTTGGAGCGGTGGCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTAAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCTA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCACCGGTCGCGGCTGGCCTAAAATCGGAGCCCCCGGCATCGGGATGTCGTGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGCGCGTCACGATGCCAACGCAAGCTCGAAGGACCCTTTGA-GTTGCCT-AACGGTAGCCTAACCGTTGCGACC--------------------------------------------------------------------------------------------------C
Silene_linnaeana_M        --------------------------------------------------------------------------------------------------------------------------------------TCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGTGTAGGGGCGTCGCTCGGTGCCTCGTGTGCC-GGCCCGTCCC-TCTCCCAAGCC--GGGGAGCGCTCACTTGTGGGCTGTTTC{CT}CCGGCAAACCAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGCGTGCTCTCCCGTCGCCCGGTCAGCCGGGCGTCGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTAAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGCGACTC{AG}CCGGTCGCGGCTGGCCTAAAATTGGAGCCCCCGGCGTCTGGATGCCGTGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGCGCGTCACGATGCCAACGTGAGCTCGAAGGACCCTTTTA-----------------------------------------------------------------------------------------------------------------------------------C
Silene_nigrescens         TGAAGTGTTCGGATCGCGGCGACGTGGGCGGTTCGCCGCCGACGACGTCGCGAGAAGTTCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGTGTTGGGGCGTTGCTTGGTGCCT{CG}GTGTGCC-GGGCCGACCC-TCTCCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTGTTTCCCCGGCAAAATAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGTGTGCTCTCCCGTCGCCCGGTTAGCCGGGCGTTGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTTAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCACCGGTCGCGGCTGGCCTAAAATTGGAGCCCTCGGCATCGGGATGTCGTGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGCGCGTCGCGATGCCAACGTGAGCTCGAAGGACCCTTTTA-GTTGCCT-AACGGCAACCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCC-----------------------C
Silene_nivalis            --------------------------------------------------------------------------------------------------------------------------------------TCGAAACCTGCCCAGCAGAGCGACCCGTGAACATCTTCAA-CCTCGTGGGTGCTGTGGCGTTGCTCGGTGCCTCGTGTGCT-GGCTCGCCCCATCTCCCAGGCA--GGGGAGCGTCCACTTGTGGGCTGTT-CCCCGGCTAACCAACGAACCCCGGCGCGTAAATGCGTCAAGGAATATAAACTTTATGTGTGTGCTCTCCTATCGCCCGGTTAGCCGGGCGTTGGAGTGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTCTGGCTGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCAAAATCCACCCTTGGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCACCGGTCGCGGCTGGCCTAAAATTGGAGCCCACGGCATCGGGATGCCGCGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGTCGCGCAT-GCCGTGCCAATG-GGGCTCGGAGGACCCTTTGTCGTTGTCTTTAAGGCAACCAAACCGTTGCGACCCC------------------------------------------------------------------------------------------------A
Silene_ostenfeldii_A      -------TTCGGATCGCGGCGACGTGGGCGGTTCGCCGCCGACGACGTCGCGAGAAGTTCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGTGTAGGGGCGTCGCTCGGTGCCTCGTGTGCC-GGCCCGTCCC-TCTCCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTGTTTTCCCGGCAAACCAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGCGTGCTCTCCCGTCGCCCGGTCAGCCGGGCGTCGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTAAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGCGACTCGCCGGTCGCGGCTGGTCTAAAATTGGAGCCCTCGGCGTTTGGATGCC{AG}TGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGTGCGTCACGATGCCAACGTGGGCTCGAAGGACCCTTTTA-GCTGCCT-AGCGGCAGCCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCCTAGTAACGG--------------C
Silene_parishii           ----------------------------------------------------------------------------------------AAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGTGTTGGAGCGTTGCTCGGTGCCTTGTGTACC-GGCTCGTCCC-TCTCCCAAGTCTGGGGGAGCGCTCACTTGTGGGCTGTTTCCCCGGCAAAACAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATA{AC}AAACATTATGTGTGTACTCTCCCGTC-CCCGGTTAGCCGGG{AC}GTTGGAGCGGTGCCATGTCCTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTTAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCACCGGTCGCGGCTGCCCTAAAATTGGAGCCCTCGGCATCGGGATGCCGTGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGCGCGTCGCCATGCCAACGTGAGCTCGAAGGACCCTTTTA-GTTGCCT-AACGGCAGCCTAACCGTTGCGACCC-------------------------------------------------------------------------------------------------C
Silene_rotundifolia       --------------------------------------------------------------------------------------------------------------------------------------TCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGCGTTGGGGCGTTGCTTGGTGCCTAGTGTGTC-GGCCCGTCCC-TCTCCCAAGCC-AGGGGAGCGCTCACTTGTGGGCTGTTTCCCCGGCAAAACAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATGCAAACATTATGTGTGTACTCTCCCGTCGCCCGGTTAGCCGGGTTATGAAGCTGTACCATGTCTTAACATTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTTAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACTCTGAGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCACCGGTCGCGGCTGGCCTAAAATTGGAGCCCTCAGCATCGGGATG{GT}TGTGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCAGCCGCGCGTGACGATGCCAACGTGAGCTCGAAGGACCCTTTAA-GTTGCTT-AACGGCAACCTAACTGTTGCGACCCC------------------------------------------------------------------------------------------------C
Silene_schafta            --------------------------------------------------------------------------------------------------------------------------------------TCGAAACCTGCCCAGCAGAGCGACCCGTGAACATGTTCAA-CCTCGTGGGGGACGGGGCGTTGCTGGGTGCCTCGTGCGCC-TGCTCGCCCC-CCTCCCAGGCC--GGGGA{AG}CGCCCACTTGTG---TATCTCCCCGGCAAAACAACGAACCCCGGCGCGTAA--GCTCCAAGGAATATAAACTTAATGTGTGTGCTCTCCCGCTGCCCGGTTAGCCGGGCGTTGGAGCTGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTCCGGCTGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AACCCACC-TCGGTGGAGGGGAAGGAGGATGGTTTCCCGCGACTCATCGGTCGCGGCTGGCCTAAAATTGGAGCCCTCGGCATCGGTATGCCGCGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGTCGCGCGT-GCCGTGCTAGCGTGGGCTCGGAGGACCCTTTGGCGTTGCCT-AACGGCAACCAAACCGTTGCGACCCC------------------------------------------------------------------------------------------------A
Silene_sorensenis_EG      --------------------------------------------------------------------------TTTAGAGGAAGGAGAAGTCGTTACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGTGTAGGGGCGTCGCTCGGTGCCTCGTGTGCC-GGCCCGTCCC-TCTCCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTGTTTTCCCGGCAAACCAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGCGTGCTCTCCCGTCGCCCGGTCAGCCGGGCGTCGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTAAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGCGACTCGCCGGTCGCGGCTGGTCTAAAATTGGAGCCCTCGGCGTTTGGATGCCGTGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGTGCGTCACGATGCCAACGTGGGCTCGAAGGACCCTTTTA-GCTGCCT-AGCGGCAGCCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCC-----------------------C
Silene_sorensenis_WG      --------------------------------------------------------------------------TTTAGAGGAAGGAGAAGTCGTTACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGTGTAGGGGCGTCGCTCGGTGCCTCGTGTGCC-GGCCCGTCCC-TCTCCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTGTTTTCCCGGCAAACCAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGCGTGCTCTCCCGTCGCCCGGTCAGCCGGGCGTCGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTAAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGCGACTCGCCGGTCGCGGCTGGTCTAAAATTGGAGCCCTCGGCGTTTGGATGCCGTGGCGATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGTGCGTCACGATGCCAACGTGGGCTCGAAGGACCCTTTTA-GCTGCCT-AGCGGCAGCCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCCTAGTAACGG--------------C
Silene_uralensis_A        -------TTCGGATCGCGGCGACGTGGGCGGTTCGCCGCCGACGACGTCGCGAGAAGTTCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGAGTTGGGGCGTTGCTCGGTGCCTCGTGTGCC-GGCCCGTCCC-TCTCCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTGTTTCCCTGGCAAAACAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGTGTACTCTCCCGTCGCCCGGTTAGCCGGGCGTTGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTTAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCACCGGTCGCGGCTGGCCTAAAATTGGAGCCCTCGGCATCGGGATGCCGTGGCGATAGGTGGTGAACAAGGCCTAGGCCAAGCAAACAACCCGCCGCGCGTCGCGATGCCAACGTGAGCTCGAAGGACCCTTTTA-GTTGCCT-AACGGCAACCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCC-----------------------C
Silene_uralensis_EG       ------------------GCGACGTGGGCGGTTCGCCGCCGACGACGTCGCGAGAAGTTCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGAGTTGGGGCGTTGCTCGGTGCCTTGTGTGCC-GGCCCGTCCC-TCTCCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTGTTTCCCTGGCAAAACAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGTGTACTCTCCCGTCGCCCGGTTAGCCGGGCGTTGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTTAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCACCGGTCGCGGCTGGCCTAAAATTGGAGCCCTCGGCATCGGGATGCCGTGGCGATAGGTGGTGAACAAGGCCTAGGCCAAGCAAGCAACCCGCCGCGCGTCGCGATGCCAACGTGAGCTCGAAGGACCCTTTTA-GTTGCCT-AACGGCAACCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCC-----------------------C
Silene_uralensis_M        -------TTCGGATCGCGGCGACGTGGGCGGTTCGCCGCCGACGACGTCGCGAGAAGTTCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGAGTTGGGGCGTTGCTTGGTGCCTCGTGTGCC-GGCTCGTCCC-TCTCCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTGTTTCCCTGGCAAAACAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGTGTACTCTCCCGTCGCCCGGTTAGCCGGGCGTTGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTTAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCACCGGTCGCGGCTGGCCTAAAATTGGAGCCCTCGGCATCGGGATGCCGTGGCGATAGGTGGTGAACAAGGCCTAGGCCAAGCAAGCAACCCGCCGCGCGTAGCGATGCCAACGTGAGCTCGAAGGACCCTTTTA-GTTGCCT-AACGGCAACCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAA--------------------------------------------C
Silene_uralensis_Sw       ----------------------------------------------------------------------------------------------------------------------TGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGAGTTGGGGCGTTGCTTGGTGCCTCGTGTGCC-GGCTCGTCCC-TCTCCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTGTTTCCCTGGCAAAACAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGTGTACTCTCCCGTCGCCCGGTCAGCCGGGCGTTGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTTAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCACCGGTCGCGGCTGGCCTAAAATTGGAGCCCTCAGCATCGGGATGCCGTGGCGATAGGTGGTGAACAAGGCCTAGGCCAAGCAAGCAACCCGCCGCGCGTCGCGATGCCAACGTGAGCTCGAAGGACCCTTTTA-GTTGCCT-AACGGCAACCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCC-----------------------C
Silene_uralensis_WG       -------TTCGGATCGCGGCGACGTGGGCGGTTCGCCGCCGACGACGTCGCGAGAAGTTCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCAA-CCTCGTGGGAGTTGGGGCGTTGCTCGGTGCCTTGTGTGC{CT}-GGCCTGTCCC-TCTCCCAAGCC-GGGGGAGCGCTCACTTGTGGGCTGTTTCCCTGGCAAAACAACGAACCCCGGCGCGTAA-TGCGTCAAGGAATACAAACATTATGTGTGTACTCTCCCGTCGCCCGGTTAGCCGGGCGTTGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCTTTTGGCTTAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCA-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCACCGGTCGCGGCTGGCCTAAAATTGGAGCCCTCGGCATCGGGATGTCGTGGCGATAGGTGGTGAACAAGGCCTAGGCCAAGCAAGCAACCCGCCGCGCGTCGCGATGCCAACGTGAGCTCGAAGGACCCTTTTA-GTTGCCT-AACGGCAACCTAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAATTTAAGCATATCAA---------------------------------------------------------C
Silene_zawadskii          --------------------------------------------------------------------------------------------------------------------------------------TCGAAACCTGCCCAGCAGAGCGACCCGTGAACACGTTCTA-CCTCGTGGGTGTTGGGGCGTCGCTCGGTGCCTCGTGTGCC-GGCCCGTCCC-TCTCCCAAGCC-GGGGGAGCGCTCCCTTCTGGGCTGTTTCCCCGGCAAAACAACGAACCCCGACGCGTAA-TGCGTCAAGGAATACAAACATTGTGTGTGTACTCTCCCGTCGCCCGGTTAGCCGGGCGTTGGAGCGGTGCCATGTCTTAACAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCTTTGGCTGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCTCCCCCG-AATCCACCCCGAGTGGAGGGGAAGGAGGATGGTCTCCCGTGACTCAC{CT}GGTTGC{GT}GCTGGCCTAAAATTGGAGCCCT{CG}-GCATCGGGATGCCGTGGC{GT}ATAGGTGGTGAACAAGGCCTCGGCCAAGCAAGCAACCCGCCGCGCGTCGCGATGCCAACGTGAGCTCGAAGGACCCTTTGA-----------------------------------------------------------------------------------------------------------------------------------C
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = ITS_rDNA) = 
		N: 1-871;
CODONPOSSET  CodonPositions (CHARACTERS = ITS_rDNA) = 
		N: 1-871;
END;