TreeBASE Search-Matrix 30205 of study 17144

@ARTICLE{TreeBASE2Ref24223, author = {Susumu Takamatsu and Hanako Ito and Yoshiro Shiroya and Levente Kiss and Vasyl P. Heluta}, title = {First comprehensive phylogenetic analysis of the genus Erysiphe (Erysiphales, Erysiphaceae), II. The Uncinula-lineage}, year = {2015}, keywords = {28S rDNA, Appendage, Host relationship, ITS, Molecular clock, Powdery mildew}, doi = {10.3852/15-062}, url = {http://}, pmid = {}, journal = {Mycologia}, volume = {107}, number = {5}, pages = {903--914}, abstract = {Phylogenetic relationships of the Uncinula-lineage that is basal group of the genus Erysiphe were investigated using 167 sequences of nuc ITS1-5.8S-ITS2 and the 28S rDNA regions. Backbone tree analyses using six data sets and two tree-constructing methods revealed that the Uncinula-lineage is divided into seven distinct clades. Clade 1?5 contained each one powdery mildew species, namely, E. australiana in Clade 1, E. liquidambaris in Clade 2, E. adunca in Clade 3, E. fraxinicola in Clade 4, and E. actinidiae in Clade 5. Clade 6 was composed of 71 sequences including Microsphaera-lineage and 17 species of Uncinula-lineage, such as E. carpinicola, E. carpini-laxiflorae, E. miyabei, E. glycines, and E. necator. Topology tests supported that Microsphaera-lineage forms a monophyletic clade in Clade 6, suggesting Microsphaera-type appendage appeared only once in this clade to diverge into Microsphaera-lineage. Clade 7 consisted of 72 sequences containing 30 species, including species of sects. Californiomyces and Typhulochaeta, four species from Nothofagus, species of the sect. Erysiphe parasitising herbaceous plants belonging to the Asteraceae, Rosaceae, and Saxifragaceae. Molecular clock analysis suggested that the major seven clades appeared 50?30 million years ago (Ma) in the Paleogene Period. The Microsphaera-lineage may have split from the Uncinula-lineage in the boundary of Paleogene and Neogene periods, when appendages with dichotomously branched tips appeared. The clade of the species on Nothofagus split from the Northern Hemisphere species in 20?10 Ma in the Miocene Epoch and host-shift from trees to herbs may have occurred in the similar period.} }

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Matrix 30205 of Study 17144

Citation title: "First comprehensive phylogenetic analysis of the genus Erysiphe (Erysiphales, Erysiphaceae), II. The Uncinula-lineage".

Study name: "First comprehensive phylogenetic analysis of the genus Erysiphe (Erysiphales, Erysiphaceae), II. The Uncinula-lineage".

This study is part of submission 17144 (Status: Published).

Matrices

Title: Erysiphe, the Uncinula-lineage Clade 7 ITS+28S Fig. 3

Description: Clade 7 ITS+28S

Rows

Taxon Label	Row Segments	Characters 1?–30
Erysiphe sp. ex Potentilla MUMH1859	(none)	CAGAGCGTGAGATCCAGC--CA-GGACTC-
Erysiphe ulmariae ex Acaena BCRU03861	(none)	CAGAGCGTGAGATCCAGC--CA-GGACTC-
Erysiphe ulmariae ex Acaena MUMH1860	(none)	CAGAGCGTGAGATCCAGC--CA-GGACTC-
Erysiphe ulmariae ex Acaena MUMH1863	(none)	CAGAGCGTGAGATCCAGC--CA-GGACTC-
Erysiphe ulmariae ex Filipendula MUMH476	(none)	CAGAGCGTGAGGTCCAGC--CA-GGACAA-
Erysiphe ulmariae ex Filipendula MUMH2558	(none)	CAGAGCGTGAGGTCCAGC--CA-GGACAA-
Erysiphe ulmariae ex Filipendula MUMH2562	(none)	CAGAGCGTGAGGTCCAGC--CA-GGACAA-
Erysiphe frickii ex Geum MUMH1864	(none)	CAGAGCGTGAGATCCAGC--CA-GGACTC-
Erysiphe frickii ex Geum BCRU01613	(none)	CAGAGCGTGAGATCCAGC--CA-GGACTC-
Erysiphe carpophila ex Weinmannia PDD76196	(none)	CAGAGCGTGAGATCCAGC--CA-GGACTC-
Erysiphe rodgersiae ex Rodgersia MUMHs69	(none)	CAGAGCGTGAGGTCCAGC--CA-GGACAG-
Erysiphe balbisiae ex Balbisia MUMH1858	(none)	CAGAGCGTGAGGTCCAGC--CA-GGACAG-
Erysiphe flexuosa ex Aesculus MUMH1429	(none)	CCGAGCGTGAGGTCCAGT--CA-TGGCAA-
Erysiphe flexuosa ex Aesculus Min08 01	(none)	CCGAGCGTGAGGTCCAGT--CA-TGGCAA-
Erysiphe wadae ex Fagus MUMH1534	(none)	CAGAGCGTGAGGTCCAGC--CAATGGCAG-
Erysiphe mayorii ex Cirsium MUMH2578	(none)	CAGAGCGTGAGGTCCAGC--CG-GGACAA-
Erysiphe mayorii ex Cirsium MUMH3952	(none)	C-----GTGAGGTCCAGC--CG-GGACAT-
Erysiphe mayorii ex Cirsium MUMH4388	(none)	C-----GTGAGGTCCAGC--CG-GGACAT-
Erysiphe simulans ex Rosa TPU439	(none)	CAGAGCGTGAGGTCCAGC--CA-TGGCAC-
Erysiphe magellanica ex Nothofagus MUMH1472	(none)	CAGAGCGTGAGGTCCAGC--CATTGGCAG-
Erysiphe magellanica ex Nothofagus MUMH1473	(none)	CAGAGCGTGAGGTCCAGC--CATTGGCAG-
Erysiphe magellanica ex Nothofagus MUMH2493	(none)	CAGAGCGTGAGGTCCAGC--CATTGGCAG-
Erysiphe magellanica ex Nothofagus MUMH2494	(none)	CAGAGCGTGAGGTCCAGC--CATTGGCAG-
Erysiphe magellanica ex Nothofagus MUMH2496	(none)	CAGAGCGTGAGGTCCAGC--CATTGGCAG-
Erysiphe magellanica ex Nothofagus MUMH2516	(none)	CAGAGCGTGAGGTCCAGC--CATTGGCAG-
Erysiphe prunastri var. prunastri ex Prunus MUMH776	(none)	CAGAGCGTGAGGTTCAGC--CA-TGGCAA-
Erysiphe prunastri var. japonica ex Prunus MUMH3406	(none)	CAGAGCGTGAGGTTCAGT--CA-TGGCAG-
Erysiphe prunastri var. japonica ex Prunus MUMH3575	(none)	CAGAGCGTGAGGTTCAGT--CA-TGGCAG-
Erysiphe prunastri var. prunastri ex Prunus MUMH652	(none)	CAGAGCGTGAGGTTCAGC--CA-TGGCAA-
Erysiphe patagoniaca ex Nothofagus MUMH2508	(none)	CAGAGCGTGAGGTCCAGC--AAATGGCAA-
Erysiphe patagoniaca ex Nothofagus MUMH2511	(none)	CAGAGCGTGAGGTCCAGC--AAATGGCAA-
Erysiphe patagoniaca ex Nothofagus MUMH1474	(none)	CAGAGCGTGAGGTCCAGC--AAATGGCAA-
Erysiphe havrylenkoana ex Nothofagus MUMH1471	(none)	CCGAGCGCGAGGTCCAGC--AAATGGCAA-
Erysiphe havrylenkoana ex Nothofagus MUMH2486	(none)	CCGAGCGCGAGGTCCAGC--AAATGGCAA-
Erysiphe nothofagi ex Nothofagus MUMH1475	(none)	CAGAGCGTGAGGTCCAGC--AAATGGCAA-
Erysiphe nothofagi ex Nothofagus MUMH2511	(none)	CAGAGCGTGAGGTCCAGC--AAATGGCAA-
Erysiphe mori ex Morus MUMH128	(none)	CAGAGCGTGAGGTCCAGC--CG-TGGCAG-
Erysiphe mori ex Morus TPU1832	(none)	CAGAGCGTGAGGTCCAGC--CG-TGGCAG-
Erysiphe oleosa ex Tilia YNMH12972	(none)	------------------------------
Erysiphe monoperidiata ex Castanopsis MUMH4990	(none)	-------------CTAGC--C--TGGCAG-
Erysiphe monoperidiata ex Castanopsis MUMH4991	(none)	-------------CTAGC--C--TGGCAG-
Erysiphe monoperidiata ex Castanopsis MUMH4988	(none)	------------TCTAGC--C--TGGCAG-
Erysiphe monoperidiata ex Lithocarpus MUMH4985	(none)	------------TCTAGC--C--TGGCAG-
Erysiphe monoperidiata ex Lithocarpus MUMH4986	(none)	------------TCTAGC--C--TGACAG-
Erysiphe monoperidiata ex Castanopsis MUMH4987	(none)	------------TCTAGC--C--TGGCAG-
Erysiphe javanica ex Castanopsis MUMH5147	(none)	------------------------------
Erysiphe javanica ex Castanopsis MUMH5153	(none)	------------TCTAGC--C--TGGCAG-
Erysiphe asiatica ex Castanopsis MUMH4989	(none)	-------------TCAGC--CA-TGGCAG-
Erysiphe asiatica ex Castanopsis MUMH4992	(none)	-------------TCAGC--CA-TGGCAG-
Erysiphe japonica var. crispulae ex Quercus MUMHs75	(none)	CAGAGCGAGAGGTCCAGC--CA-TGGCAG-
Erysiphe japonica var. japonica ex Quercus MUMH4159	(none)	CAGAGCGAGAGGTCCGGC--CA-TGGCAG-
Erysiphe japonica var. crispulae ex Quercus MUMH4163	(none)	CAGAGCGAGAGGTCCAGC--CA-TGGCAG-
Erysiphe japonica var. japonica ex Quercus MUMH4146	(none)	------------------------------
Erysiphe japonica var. japonica ex Quercus MUMH4582	(none)	CAGAGCGAGAGGTCCGGC--CA-TGGCAG-
Erysiphe japonica var. japonica ex Quercus MUMH5555	(none)	----------GGTCCGGC--CA-TGGCAG-
Erysiphe ljubarskii ex Acer MUMH475	(none)	CAGAGCGTGAGGT?TAGC--CA-TGGCAAG
Erysiphe ljubarskii ex Acer MUMH404	(none)	CAGAGCGTGAGGTCTAGC--CA-TGGCAAG
Erysiphe trinae ex Quercus MUMH113	(none)	CAGAGCGTGAGGTCCAGC--CC-TGGCAA-
Erysiphe gracilis var. gracilis ex Quercus MUMH122	(none)	CAGAGCGTGAGGTCCAGC--CA-TAGCAG-
Erysiphe gracilis var. longissima ex Quercus MUMH406	(none)	CGGAGCGTGAGGTCCAGCCTCA-TGGCAGT
Erysiphe gracilis var. longissima ex Quercus MUMHs25	(none)	CAGAGCGTGAGGTCCAGC--TA-TAGCAG-
Erysiphe kenjiana ex Ulmus KW34758	(none)	-----------------C--CA-TGGCAG-
Erysiphe kenjiana ex Ulmus KW34760	(none)	CAGAGCGTGAAGTCCAGC--CA-TGGCAG-
Erysiphe kenjiana ex Ulmus KW34763	(none)	CAGAGCGTGAAGTCCAGC--CA-TGGCAG-
Erysiphe kenjiana ex Ulmus MUMH4879	(none)	------------------------------
Erysiphe bivonae ex Ulmus MUMHs100	(none)	CAGAGCGTGAAGTCCAGC--CA-TGGCAG-
Erysiphe bivonae ex Ulmus MUMH21	(none)	------------------------------
Erysiphe bivonae ex Ulmus AK121	(none)	------------------------------
Erysiphe aphananthes ex Aphananthe MUMH4648	(none)	CAGAGCGTGAGGTCCAGC--CA-TGGCAG-
Erysiphe kasanoi ex Celtis MUMH20	(none)	CAGAGCGTGAGGTCCAGC--CA-TGGCAG-
Erysiphe michikoae ex Celtis MUMH5055	(none)	CAGAGCGTGAGGTCCAGC--CA-TGGCAG-
Erysiphe zelkowae ex Zelkova MUMH403	(none)	GAGCGTGTAAGGTCCAGC--CA-TGGCAG-
Erysiphe arcuata ex Carpinus MUMH2589	(none)	CAGAGCGTAAGGTCCAGC--CA-TGGCAT-

Columns

None of the columns has a description.