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Citation
Taxa
Matrices
Trees
Analyses
Matrix 3232 of Study 2108
Citation title: "A Phylogenomic study of birds reveals their evolutionary history".
This study was previously identified under the legacy study ID S2079
(Status: Published).
Matrices
Title: RHO
Description: Legacy TreeBASE Matrix ID = M3897
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Alligator mississippiensis | (none) | AGGTTGCTACTTTGAAGGCTTCTTTGCTAC |
| Gavialis gangeticus | (none) | ?????????????????????????????? |
| Acanthisitta chloris | (none) | AGGCTGCTACCTCGAAGGCTTCTTTGCCAC |
| Aegotheles insignis | (none) | AGGGTGCTACTTCGAAGGCTTCTTTGCTAC |
| Aerodramus vanikorensis | (none) | AGGGTGCTACATCGAGGGCTTCTTTGCTAC |
| Alcedo leucogaster | (none) | GGGCTGCTACATCGAAGGCTTCTTCGCCAC |
| Alectura lathami | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Alisterus scapularis | (none) | GGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Anas platyrhynchos | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Anhinga anhinga | (none) | AGGGTGCTACCTCGAAGGCTTCTTTGCTAC |
| Anser erythropus | (none) | AGGG{GT}G{CG}TACATCGAAGGCTTCTT |
| Anseranas semipalmata | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Apteryx australis | (none) | GGGCTGCAACCTCGAAGGCTTCTTCGCTAC |
| Aramus guarauna | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Ardea herodias | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Arenaria interpres | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Aythya americana | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Balaeniceps rex | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Batrachostomus septimus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Biziura lobata | (none) | ?????????????????????????????? |
| Bombycilla garrulus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Brachypteracias squamigera | (none) | AGGGTGCTACATCGAGGGCTTCTTTGCCAC |
| Bucco macrodactylus | (none) | AGGCTGCTACATCGAAGGCTTCTTCGCCAC |
| Bucorvus abyssinicus | (none) | ?????????????????????????????? |
| Burhinus bistriatus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Buteo jamaicensis | (none) | AGGGTGCTACATTGAAGGCTTCTTTGCTAC |
| Cacatua sulphurea | (none) | GGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Capito niger | (none) | AGGCTGCTACATCGAGGGCTTCTTCGCTAC |
| Caprimulgus longirostris | (none) | AGGGTGCTACATTGAAGGCTTCTGTGCTAC |
| Cariama cristata | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Casuarius casuarius | (none) | TGGCTGCTACCTCGAAGGCTTCTTCGCTAC |
| Cathartes aura | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Centropus viridis | (none) | AGGATGCTACATCGAAGGCTTCTTTGCGAC |
| Chalcopsitta cardinalis | (none) | GGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Charadrius vociferus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Chauna torquata | (none) | GGGGTGCTACATTGAAGGCTTCTTTGCTAC |
| Choriotis kori | (none) | ?????????????????????????????? |
| Ciconia ciconia | (none) | AGGGTGCTACATTGAAGGCTTCTTTGCCAC |
| Climacteris erythrops | (none) | ?????????????????????????????? |
| Coccyzus americanus | (none) | AGGGTGCTACCTCGAAGGCTTCTTTGCGAC |
| Cochlearius cochlearius | (none) | AGGGTGCTACATGGAAGGCTTCTTTGCTAC |
| Colibri coruscans | (none) | AGGATGCTACATCGAGGGCTTCTTTGCTAC |
| Colinus cristatus | (none) | GGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Colius colius | (none) | GGGCTGCTACATCGAGGGCTTCTTCGCCAC |
| Columba livia | (none) | GGGCTGCTACATCGAAGGCTTCTTTGCTAC |
| Columbina passerina | (none) | ?????????????????????????????? |
| Coracias caudata | (none) | AGGGTGCTACATCGAAGGCTTCTTCGCAAC |
| Corvus corone | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Corythaeola cristata | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Coturnix coturnix | (none) | AGGGTGCTACATTGAGGGCTTCTTTGCTAC |
| Coua cristata | (none) | AGGCTGCTACGTCGAAGGCTTCTTTGCAAC |
| Crax alector | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Crotophaga sulcirostris | (none) | AGGATGCTACCTCGAAGGCTTCTTTGCAAC |
| Crypturellus soui | (none) | AGGCTGCTACCTCGAGGGCTTCTTCGCTAC |
| Cuculus canorus | (none) | AGGGTGCTACCTCGAAGGCTTCTTTGCGAC |
| Daptrius ater | (none) | AGGGTGCTACATTGAAGGATTCTTTGCTAC |
| Dendrocolaptes certhia | (none) | AGGGTGCTACATTGAAGGTTTTTTTGCTAC |
| Diomedea nigripes | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Dromaius novaehollandiae | (none) | GGGCTGCTACATCGAAGGCTTCTTCGCTAC |
| Dromas ardeola | (none) | ?????????????????????????????? |
| Dryocopus pileatus | (none) | ?????????????????????????????? |
| Eudocimus albus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Eudromia elegans | (none) | AGGCTGCTACATCGAGGGCTTCTTCGCTAC |
| Eudyptula minor | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Eupodotis ruficrista | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Eurostopodus macrotis | (none) | AGGGTGCTACATTGAAGGCTTCTGTGCTAC |
| Eurypyga helias | (none) | GGGGTGCTACGTCGAAGGCTTCTTCGCTAC |
| Falco mexicanus | (none) | AGGGTGCTACATTGAAGGATTCTTTGCTAC |
| Fregata magnificens | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Fringilla montifringilla | (none) | GGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Galbula albirostris | (none) | AGGGTGCTACATTGAAGGTTTCTTTGCAAC |
| Gallus gallus | (none) | AGGGTGCTACATCGAGGGCTTCTTTGCTAC |
| Gampsonyx swainsonii | (none) | AGGGTGCTACATTGAAGGCTTCTTTGCTAC |
| Gavia immer | (none) | AGGGTGCAACGTCGAAGGCTTCTTTGCTAC |
| Geococcyx californianus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCAAC |
| Geotrygon montana | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Grallaria varia | (none) | ?????????????????????????????? |
| Grus canadensis | (none) | AGGGTGCTACATTGAAGGCTTCTTTGCTAC |
| Haematopus ostralegus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Heliornis fulica | (none) | ?????GCTACCTCGAAGGCTTCTTCGCTAC |
| Hemiprocne mystacea | (none) | AGGGTGCTACATAGAGGGCTTCTTTGCTAC |
| Herpetotheres cachinnans | (none) | AGGGTGCTACATTGAAGGATTCTTTGCTAC |
| Himantornis haematopus | (none) | ?????????????????????????????? |
| Indicator maculatus | (none) | ?????????????????????????????? |
| Jacana jacana | (none) | AGGGTGCTACATCGAGGGCTTCTTTGCTAC |
| Larus marinus | (none) | AGGGTGCTACGTCGAAGGCTTCTTTGCTAC |
| Leptosomus discolor | (none) | ???????TACATCGAAGGCTTCTTTGCTAC |
| Malacorhynchus membranaceus | (none) | AGGGCGCTACATCGAAGGCTTCTTTGCTAC |
| Malurus melanocephalus | (none) | ????????????CGAAGGCTTCTTTGCCAC |
| Megalaima virens | (none) | AGGCTGCTACATCGAGGGCTTCTTCGCCAC |
| Megapodius eremita | (none) | ???????????????AGGCTTCTTTGC{CT |
| Menura novaehollandiae | (none) | ?????????????????????????????? |
| Merops nubicus | (none) | ?????????????????????????????? |
| Mesitornis unicolor | (none) | AGGGTGCTACATTGAAGGCTTCTTTGCTAC |
| Micrastur semitorquatus | (none) | AGGGTGCTACATTGAAGGATTCTTTGCTAC |
| Micropsitta finschii | (none) | GGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Mionectes macconnelli | (none) | GGGGTGTTACATTGAAGGCTTCTTTGC{CT |
| Momotus momota | (none) | ???????????TCGAAGGCTTCTTTGCTAC |
| Monias benschi | (none) | AGGGTGCTACATTGAAGGCTTCTGTGCTAC |
| Morus bassanus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Nothoprocta perdicaria | (none) | AGGCTGCTACATCGAGGGCTTCTTCGCTAC |
| Numida meleagris | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Nyctibius bracteatus | (none) | AGGGTGCTACGTCGAAGGCTTCTGTGCTAC |
| Nyctibius grandis | (none) | AGGGTGCTACGTCGAAGGCTTCTGTGCTAC |
| Oceanites oceanicus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Oceanodroma tethys | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Opisthocomus hoazin | (none) | AGGGTGCTACATCGAAGGATTCTTTGCTAC |
| Otidiphaps nobilis | (none) | GGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Oxyura jamaicensis | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Pandion haliaetus | (none) | AGGGTGCTACCTTGAAGGCTTCTTTGCTAC |
| Passer montanus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Pedionomus torquatus | (none) | ?????????????????????????????? |
| Pelecanoides urinatrix | (none) | ?????????????????????????????? |
| Pelecanus occidentalis | (none) | AGGGTGCTACCTCGAAGGCTTCTTTGCTAC |
| Phaenicophaeus curvirostris | (none) | ?????????????????????????????? |
| Phaethon lepturus | (none) | AGGGTGCTACCTTGAAGGCTTCTTTGCTAC |
| Phaethon rubricauda | (none) | AGGGTGCTACCTTGAAGGCTTCTTTGCTAC |
| Phaethornis griseogularis | (none) | ?????????????????????????????? |
| Phalacrocorax carbo | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Pharomachrus auriceps | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Phegornis mitchellii | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Phodilus badius | (none) | AGGGTGCTACTTCGAAGGCTTCTTTGCTAC |
| Phoenicopterus chilensis | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Phoeniculus purpureus | (none) | ?????????????????????????????? |
| Picathartes gymnocephalus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Pipra coronata | (none) | AGGGTGTTACATTGAAGGCTTCTTTGCCAC |
| Pitta guajana | (none) | GGGGTGCTACATTGAAGGCTTCTTTGCCAC |
| Platycercus elegans | (none) | GGGGTGCTACATTGAAGGCTTCTTTGCCAC |
| Ploceus cucullatus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Podargus strigoides | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Podiceps auritus | (none) | AGGATGCTACATCGAAGGCTTCTTTGCTAC |
| Psittacula alexandri | (none) | GGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Psittacus erithacus | (none) | GGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Psophia crepitans | (none) | AGGGTGCTACATTGAAGGCTTCTTTGCTAC |
| Pterocles namaqua | (none) | AGGGTGCTACATCGAGGGCTTCTTTGCTAC |
| Puffinus griseus | (none) | AGGGTGCTACATTGAAGGCTTCTTTGCTAC |
| Rallus limicola | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Regulus calendula | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Rhea americana | (none) | AGGCTGCTACATCGAAGGCTTCTTTGCTAC |
| Rhynochetos jubatus | (none) | AGGGTGCTACATCGAAGGTTTCTTCGCTAC |
| Rollulus rouloul | (none) | AGGGTGCTACATTGAGGGCTTCTTTGCTAC |
| Rostratula benghalensis | (none) | AGGGTGCTACATCGAGGGCTTCTTTGCTAC |
| Sagittarius serpentarius | (none) | ?????????????????????????????? |
| Sapayoa aenigma | (none) | AGGGTGCTACATTGAAGGCTTCTTTGCCAC |
| Sarcoramphus papa | (none) | AGGGTGCTACATTGAAGGCTTCTTTGCTAC |
| Sarothrura elegans | (none) | AGGGTGCTACCTCGAGGGCTTCTTTGCTAC |
| Scopus umbretta | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Scytalopus magellanicus | (none) | AGGGTGCTACCTTGAAGGCTTCTTTGCCAC |
| Smithornis rufolateralis | (none) | AGGGTGCTACATTGAAGGCTTCTTTGCCAC |
| Speotyto cunicularia | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Steatornis caripensis | (none) | AGGGTGCTACCTCGAAGGTTTCTTCGCTAC |
| Streptoprocne zonaris | (none) | CGGGTGCTACATCGAGGGCTTCTTTGCTAC |
| Strix occidentalis | (none) | ??GGTGCTACATCGAAGGCTTCTTTGCCAC |
| Struthio camelus | (none) | GGGCTGCTACATCGAAGGCTTCTTCGCTAC |
| Sylvia nana | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Syrrhaptes paradoxus | (none) | GGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Tauraco erythrolophus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Thamnophilus nigrocinereus | (none) | AGGGTGCTACATTGAAGGTTTCTTTGCCAC |
| Thinocorus orbignyianus | (none) | ??GGTGCTACATCGAGGGCTTCTTTGCTAC |
| Tinamus guttatus | (none) | AGGCTGCTACATTGAGGGCTTCTTCGCTAC |
| Tockus camurus | (none) | GGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Todus angustirostris | (none) | ?????????????????????????????? |
| Treron vernans | (none) | ?????????????????????????????? |
| Trogon personatus | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCGAC |
| Turdus falklandii | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCCAC |
| Turnix sylvatica | (none) | GGGCTGCTACATCGAGGGCTTCTTTGCCAC |
| Tyrannus tyrannus | (none) | AGGGTGTTACATTGAAGGCTTCTTTGCCAC |
| Tyto alba | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCTAC |
| Upupa epops | (none) | ????TGCTACATCGAAGGCTTCTTTGTTAC |
| Urocolius indicus | (none) | GGGCTGCTACATCGAGGGCTTCTTTGCCAC |
| Vidua chalybeata | (none) | AGGGTGCTACATCGAAGGCTTCTTTGCCAC |
Columns
None of the columns has a description.
