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Citation
Taxa
Matrices
Trees
Analyses
Matrix 3240 of Study 2108
Citation title: "A Phylogenomic study of birds reveals their evolutionary history".
This study was previously identified under the legacy study ID S2079
(Status: Published).
Matrices
Title: HMGN2
Description: Legacy TreeBASE Matrix ID = M3905
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Dromaius novaehollandiae | (none) | GTAAGAAGTTA-AATATTTT--GAGAAA-- |
| Dromas ardeola | (none) | ?????????????????????????????? |
| Dryocopus pileatus | (none) | GTAAGAAGTTC-AATATTTA--GAGAAA-- |
| Eudocimus albus | (none) | GTGAGAAGCTC-GATATTCC--GAGAAA-- |
| Eudromia elegans | (none) | ??????????????TATTTTT-GGGAAA-- |
| Eudyptula minor | (none) | GTAAGAAGTTG-AATATTTT--GAGAAA-- |
| Eupodotis ruficrista | (none) | GTAAGAAGTTC-AATATTTT--GAGAAA-- |
| Eurostopodus macrotis | (none) | ?????????????????????????????? |
| Eurypyga helias | (none) | GTAAGAAGTTC-AACATTTT--GAGAAA-- |
| Falco mexicanus | (none) | GTAAGAAGTTC-AATATGAC--GAGAAA-- |
| Fregata magnificens | (none) | GTAAGAACTTC-AATATTTT--GAGAAA-- |
| Fringilla montifringilla | (none) | ?????????????????????????????? |
| Galbula albirostris | (none) | ?????????????????????????????? |
| Gallus gallus | (none) | GTAAGAAGTTG-GGCATCTT--GAGAAAA- |
| Gampsonyx swainsonii | (none) | ?????????????????????????????? |
| Gavia immer | (none) | GTAAGAAGTTC-AGTATTTT--GAGAAA-- |
| Geococcyx californianus | (none) | ?????????????????????????????? |
| Geotrygon montana | (none) | ?????????????????????????????? |
| Grallaria varia | (none) | ?????????????????????????????? |
| Grus canadensis | (none) | ?????????????????????????????? |
| Haematopus ostralegus | (none) | GTAAGAAGTCC-AGTATTT---GAAAAAA- |
| Heliornis fulica | (none) | ?????????????????????????????? |
| Hemiprocne mystacea | (none) | ?????????????????????????????? |
| Herpetotheres cachinnans | (none) | ?????????????????????????????? |
| Himantornis haematopus | (none) | ?????????????????????????????? |
| Indicator maculatus | (none) | ?????????????????????????????? |
| Jacana jacana | (none) | ?????????????????????????????? |
| Larus marinus | (none) | ?????????????????????????????? |
| Leptosomus discolor | (none) | ?????????????????????????????? |
| Malacorhynchus membranaceus | (none) | ?????????????????????????????? |
| Malurus melanocephalus | (none) | ?????????????????????????????? |
| Megalaima virens | (none) | ?????????????????????????????? |
| Megapodius eremita | (none) | GTAAGGAGTTG-GGTGTTGT--AAGA---- |
| Menura novaehollandiae | (none) | ?????????????????????????????? |
| Merops nubicus | (none) | ?????????????????????????????? |
| Mesitornis unicolor | (none) | ?????????????ATATTTT--GAGAAA-- |
| Micrastur semitorquatus | (none) | ?????????????????????????????? |
| Micropsitta finschii | (none) | ?????????????????????????????? |
| Mionectes macconnelli | (none) | ?????????????????????????????? |
| Momotus momota | (none) | ?????????????????????????????? |
| Monias benschi | (none) | ?????????????????????????????? |
| Morus bassanus | (none) | ?????????????????????????????? |
| Nothoprocta perdicaria | (none) | GTAAGAAGTTA-AA{CT}ATTTTT-GAGAA |
| Numida meleagris | (none) | GTAAGAAGTTG-GGCATCTT--GAGAAAA- |
| Nyctibius bracteatus | (none) | ?????????????????????????????? |
| Nyctibius grandis | (none) | GTAAGAAGTTG-AATATTTC--GAGAAA-- |
| Oceanites oceanicus | (none) | GTAAGAAGTTC-AATATTTT--GAGAAA-- |
| Oceanodroma tethys | (none) | ?????????????????????????????? |
| Opisthocomus hoazin | (none) | GTAAGAAGTTC-CATATTTT--GACAAA-- |
| Otidiphaps nobilis | (none) | ?????????????????????????????? |
| Oxyura jamaicensis | (none) | ?????????????????????????????? |
| Pandion haliaetus | (none) | GTAAGAAGTTC-AACATTTT--GAGAAA-- |
| Passer montanus | (none) | GTAAGAAGTTG-GGTGTTTT--GAGAAA-- |
| Pedionomus torquatus | (none) | ?????????????????????????????? |
| Pelecanoides urinatrix | (none) | ?????????????????????????????? |
| Pelecanus occidentalis | (none) | ?????????????????????????????? |
| Phaenicophaeus curvirostris | (none) | ?????????????????????????????? |
| Phaethon lepturus | (none) | GTAAGAAGTTC-AATATTTT--AAGCGA-- |
| Phaethon rubricauda | (none) | ?????????????????????????????? |
| Phaethornis griseogularis | (none) | ?????????????????????????????? |
| Phalacrocorax carbo | (none) | ?????????????????????????????? |
| Pharomachrus auriceps | (none) | ?????????????????????????????? |
| Phegornis mitchellii | (none) | ?????????????????????????????? |
| Phodilus badius | (none) | ?????????????????????????????? |
| Phoenicopterus chilensis | (none) | GTAAGAAGTTC-AATATTTT--GAGAAA-- |
| Phoeniculus purpureus | (none) | ?????????????????????????????? |
| Picathartes gymnocephalus | (none) | ?????????????????????????????? |
| Pipra coronata | (none) | ?????????????????????????????? |
| Pitta guajana | (none) | GTAAGAAGTTC-CATGTTCT--GAGAAA-- |
| Platycercus elegans | (none) | ?????????????????????????????? |
| Ploceus cucullatus | (none) | GTAAGAAGTTC-AGTGTTTT--GAGAAA-- |
| Podargus strigoides | (none) | GTAAGAAGTTG-CATATTTT--GAAAAAAA |
| Podiceps auritus | (none) | GTAAGAAGTTC-AGTATTTT--GAAAAA-- |
| Psittacula alexandri | (none) | ?????????????????????????????? |
| Psittacus erithacus | (none) | GTAAGAAGTTCCAGTATTCA--AGGAAA-- |
| Psophia crepitans | (none) | ?????????????????????????????? |
| Pterocles namaqua | (none) | GTAAGAAGTTG-GATATTTA--GAGAAA-- |
| Puffinus griseus | (none) | GTAAGAAGTTC-AATGTTTT--GAGAAA-- |
| Rallus limicola | (none) | ?????????????????????????????? |
| Regulus calendula | (none) | ?????????????????????????????? |
| Rhea americana | (none) | GTAAGAAGTTA-AATATTTT--GAGAAA-- |
| Rhynochetos jubatus | (none) | GTAAGAAGTTC-{AC}ATATTTT--GAGAA |
| Rollulus rouloul | (none) | ?????????????????????????????? |
| Rostratula benghalensis | (none) | ?????????????????????????????? |
| Sagittarius serpentarius | (none) | ?????????????????????????????? |
| Sapayoa aenigma | (none) | ?????????????????????????????? |
| Sarcoramphus papa | (none) | ?????????????????????????????? |
| Sarothrura elegans | (none) | ?????????????????????????????? |
| Scopus umbretta | (none) | ?????????????????????????????? |
| Scytalopus magellanicus | (none) | ?????????????????????????????? |
| Smithornis rufolateralis | (none) | GTAAGAAGTTC-AGTGTCTT--GAGAAA-- |
| Speotyto cunicularia | (none) | ?????????????????????????????? |
| Steatornis caripensis | (none) | GTAAGAAGTTC-AGTATTTT--GAAAAA-- |
| Streptoprocne zonaris | (none) | GTAAGAAGTTC-AGTATTTTT-AAAAAA-- |
| Strix occidentalis | (none) | ?????????????????????????????? |
| Struthio camelus | (none) | GTAAGAAGTTA-AATATTTT--GAGAAA-- |
| Sylvia nana | (none) | ?????????????????????????????? |
| Syrrhaptes paradoxus | (none) | ?????????????????????????????? |
| Tauraco erythrolophus | (none) | GTAAGAAGTTC-AATGTTTT--GAGAAA-- |
| Thamnophilus nigrocinereus | (none) | ?????????????????????????????? |
| Thinocorus orbignyianus | (none) | ?????????????????????????????? |
| Tinamus guttatus | (none) | GTAAGAAGTTA-AATATTTTT-GCGAAA-- |
| Tockus camurus | (none) | GTAAGAGGCTCTATTATTCT--GAGAAA-- |
| Todus angustirostris | (none) | ?????????????????????????????? |
| Treron vernans | (none) | ?????????????????????????????? |
| Trogon personatus | (none) | GTAAGAAGTTC-AATATTTG--GAGAAA-- |
| Turdus falklandii | (none) | ?????????????????????????????? |
| Turnix sylvatica | (none) | ?????????????????????????????? |
| Tyrannus tyrannus | (none) | ?????????????????????????????? |
| Tyto alba | (none) | GTAAGAAGTTC-AACATTTT--GAGAAA-- |
| Upupa epops | (none) | ?????????????????????????????? |
| Urocolius indicus | (none) | ?????????????????????????????? |
| Vidua chalybeata | (none) | GTAAGAAGTTC-AGTGTTTT--GAGAAA-- |
| Alligator mississippiensis | (none) | ?????????????????????????????? |
| Gavialis gangeticus | (none) | ?????????????????????????????? |
| Acanthisitta chloris | (none) | GTTGGGTGTTT-TCTGG-----AGGAAA-- |
| Aegotheles insignis | (none) | GTAAGAAGCTC-AATATTGT--GAGAAA-- |
| Aerodramus vanikorensis | (none) | ?????????????????????????????? |
| Alcedo leucogaster | (none) | GTAAGAAGTTC-ACTTTTTTTGGAGAAA-- |
| Alectura lathami | (none) | ?????????????????????????????? |
| Alisterus scapularis | (none) | ?????????????????????????????? |
| Anas platyrhynchos | (none) | GTAAGAAGTTG-GGTGTTTTTCGCCGAA-- |
| Anhinga anhinga | (none) | ?????????????????????????????? |
| Anser erythropus | (none) | GTAAGAAGTTG-GGTGTTTT-CGCCAAA-- |
| Anseranas semipalmata | (none) | GTAAGAAGTTC-AATATTTG--GGGAAAA- |
| Apteryx australis | (none) | GTAAGAAGTTA-AATATTTT--GAGAAA-- |
| Aramus guarauna | (none) | ?????????????????????????????? |
| Ardea herodias | (none) | GTAAGAAGTTC-AATATTTG--GAGAAA-- |
| Arenaria interpres | (none) | GTAAGAAGTTC-AGTATTTT--GAGAAA-- |
| Aythya americana | (none) | GTAAGAAGTTG-GGTGTTTTTCGCCGAA-- |
| Balaeniceps rex | (none) | GTAAGAAGTTC-AACGTTTT--GAGAAA-- |
| Batrachostomus septimus | (none) | ?????????????????????????????? |
| Biziura lobata | (none) | ?????????????????????????????? |
| Bombycilla garrulus | (none) | ?????????????????????????????? |
| Brachypteracias squamigera | (none) | ?????????????????????????????? |
| Bucco macrodactylus | (none) | ?????????????????????????????? |
| Bucorvus abyssinicus | (none) | ?????????????????????????????? |
| Burhinus bistriatus | (none) | ?????????????????????????????? |
| Buteo jamaicensis | (none) | GTAAGAAGTTC-AACATTTT--GAGAAA-- |
| Cacatua sulphurea | (none) | ?????????????????????????????? |
| Capito niger | (none) | ?????????????????????????????? |
| Caprimulgus longirostris | (none) | GTAAGAAGTTC-CATATTTTTTGAGAAA-- |
| Cariama cristata | (none) | GTAAGAAGTTC-ACTATTTT--GTGAAA-- |
| Casuarius casuarius | (none) | GTAAGAAGTTA-AATATTTT--GAGAAA-- |
| Cathartes aura | (none) | GTAAGAAGTTC-AACGTTTT--GAGAAA-- |
| Centropus viridis | (none) | ?????????????????????????????? |
| Chalcopsitta cardinalis | (none) | ?????????????????????????????? |
| Charadrius vociferus | (none) | GTAAGAAGTTC-ACTATTTT--GAGAAA-- |
| Chauna torquata | (none) | GTAAGAAGTTC-AGTATTTT--GAGAAAA- |
| Choriotis kori | (none) | ?????????????????????????????? |
| Ciconia ciconia | (none) | GTAAGAAGTTC-AATATTTT--GAGAAA-- |
| Climacteris erythrops | (none) | ?????????????????????????????? |
| Coccyzus americanus | (none) | GTAAGAACTTC-AACATTTG--GAGAAA-- |
| Cochlearius cochlearius | (none) | ?????????????????????????????? |
| Colibri coruscans | (none) | GTAAGAAGTTA-AGTGTTCG--GAGAAA-- |
| Colinus cristatus | (none) | ?????????????????????????????? |
| Colius colius | (none) | GTAAGAAGTTC-AATCTTCT--GAGAAA-- |
| Columba livia | (none) | GTAAGGAGTTC-AGCATTTT--CAGAAA-- |
| Columbina passerina | (none) | ?????????????????????????????? |
| Coracias caudata | (none) | ?????????????????????????????? |
| Corvus corone | (none) | GTAAGAAGTTC-AGTGTTTT--GAGAAA-- |
| Corythaeola cristata | (none) | ?????????????????????????????? |
| Coturnix coturnix | (none) | GTAAGAAGTTG-GGCATCTT--GAGAAGAA |
| Coua cristata | (none) | ?????????????????????????????? |
| Crax alector | (none) | GTAAGGGGTCG-GG--------GGGA---- |
| Crotophaga sulcirostris | (none) | ?????????????????????????????? |
| Crypturellus soui | (none) | ?????????????????????????????? |
| Cuculus canorus | (none) | ?????????????????????????????? |
| Daptrius ater | (none) | ?????????????????????????????? |
| Dendrocolaptes certhia | (none) | ?????????????????????????????? |
| Diomedea nigripes | (none) | ?????????????????????????????? |
Columns
None of the columns has a description.
