#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 03, 2024; 7:32 GMT

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Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=9;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_CDSM653_01577'
            'Caldanaerobacter subterraneus tengcongensis_NP_623293.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM92226.1'
            'Escherichia coli WP_000132963.1'
            'Geobacillus sp. Y4.1MC1 YP_003989199.1'
            'Geobacillus thermoglucosidasius YP_004587930.1'
            'Moorella thermoacetica YP_431014.1'
            'Thermacetogenium phaeum YP_006921304.1'
            'Thermoanaerobacter sp. YS13 THYS13_RS04615'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32846]

	TITLE HycI_alignment;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=160;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                   10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160]
[                                                                    .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
'Caldanaerobacter subterraneus pacificus_CDSM653_01577'     ----VITVGNEMMGDDGAGPLLARLLEQNPIPGWQVIDGGSVPENYLHKIRYLKPDVVVVVDACEMNLKAGSIRLISESHIVCKFILSTHNLPLTFFISALREVVPEVYFIGIQPAAVGFGMPISSEVCRAVQIVYQKLQ--TGNLDFPHLDD-------
'Caldanaerobacter subterraneus tengcongensis_NP_623293.1'   MKRIVITVGNEMMGDDGAGPLLARLLEQNPIPGWQVIDGGSVPENYLHKIRYLKPDVVVVVDACEMNLKAGSIRLISESHIVCKFILSTHNLPLTFFISALREVVPEVYFIGIQPAAVGFGMPISSEVCRAVQIVYQKLQ--TGNLDFPHLDD-------
'Caldanaerobacter subterraneus yonseiensis_ERM92226.1'      MKRIVITVGNEMMGDDGAGPLLARLLEQNPIPGWQVIDGGSVPENYLHKIRYLKPDVVVVVDACEMNLKAGSIRLISESHIVCKFILSTHNLPLTFFISALREVVPEVYFIGIQPAAVGFGMPISSEVCRAVQIVYQKLQ--TGNLDFPHLDD-------
'Escherichia coli WP_000132963.1'                           MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKEDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVKEE----
'Geobacillus sp. Y4.1MC1 YP_003989199.1'                    MKRLVITVGNEMMGDDGAGPLLARLLERNRIPGWEVIDGGSVPENYFHRVRDMKPEVAVVVDACDMNLKAGSVRLISENDIADEWILSTHRLPLSFFISALKELVPEVYFIGIQPSIVAFGVPVSPEIRQAVEMVYQKLK--AGKMDFPTLDD-------
'Geobacillus thermoglucosidasius YP_004587930.1'            MKRLVITVGNEMMGDDGAGPLLARLLERNRIPGWEVIDGGSVPENYFHRVRDMKPEVAVVVDACDMNLKAGSVRLISENDIADEWILSTHRLPLSFFISALKELVPEVYFIGIQPSIVAFGVPVSPEIRQAVEMVYQKLK--AGKMDFPTLDD-------
'Moorella thermoacetica YP_431014.1'                        MKGLVITVGNELMGDDGAGPLLARLLEQKRIPGWEVINGGPAPENYLHQVRDLKPGAVVVVDACEMNLQAGSIRLISEKDIACEFFLTTHRLPLSFFISALKELVPEVYFIGIQPAVVAFGLPVSPEVKQAVETVYQKLQ--AGKLDFQCLGQLGEKEDA
'Thermacetogenium phaeum YP_006921304.1'                    MKKLVLTVGNELMGDDAAGPLLAKLLEKNPLSNWEVIDGGTTPENYLYRIREMRPDLVLVVDAADMNLPPGSIRLIPPEAIGEHLLMTTHNLPLTYLIRALREFVPQVYLLGIQPRDVLFGLPAFIGVKKAVATVYEKLK--QGDLNFDTL---------
'Thermoanaerobacter sp. YS13 THYS13_RS04615'                VKRIVITVGNEMMGDDGAGPLLARLLKQNLIPGWQVIDGGSVPENYLHKIRYLKPDVVVVVDACEMNLKAGSIRLISESHIVCKFILSTHNLPLTFFISALREVVPEVYFIGIQPAAVGFGMPISSEVCRAVQIVYQKLQ--TGSLDFPHLDD-------
;
END;