#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 03, 2024; 6:52 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=10;
        TAXLABELS
            'Caldanaerobacter subterraneus yonseiensis_ERM91217.1'
            'Caloramator australicus WP_008908960.1'
            'Fervidobacterium pennivorans YP_005472179.1'
            Thermoanaerobacter_ethanolicus_EGD52033.1
            Thermoanaerobacter_siderophilus_EIW00256.1
            Thermoanaerobacter_thermohydrosulfuricus_EMT39652.1
            'Thermoanaerobacter wiegelii YP_004818841.1'
            'Thermobrachium celere WP_018663230.1'
            'Thermotoga maritima NP_229019.1'
            'Thermotoga sp. YP_001739623.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32943]

	TITLE MbxJ_alignment;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=198;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190        ]
[                                                                 .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .        ]
'Caldanaerobacter subterraneus yonseiensis_ERM91217.1'   MEDLKANDKRSYIDNLIDFFRKRSIWILHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYVSLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPRPEAVIDALQTLMEMIQSGEGGAYKKYKENYEYYKKNQDRVLRKEAPILGSSETESIYQEKEGNYET
'Caloramator australicus WP_008908960.1'                 ------------------------------------------MTSRWDVERFGIGPMATPRQADVLLVTGYVSLKTLKRIIRTYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPRPEAVMDALQTLMKMIQSGEAGAYKKYKENYEYYKANQDRVLRKTYPILGEKLIQNEEAATSIE---
'Fervidobacterium pennivorans YP_005472179.1'            ---MAQIDERSVWEKIADQLRSRSMWMLHYCTGCGAVELPPSMTSRFDMERLGMGPMATPRQADILLITGYLSAKTLRRVIYTYEKMADPKYVIGFGSCTINGGIYYDSYSTINRLDYYIPVDLYIAGCMPRPEAILNAFNTLMEMIRKGEANGWKRYKENYEWYKQNQIRS-------LGEVIVHDEFHE-------
Thermoanaerobacter_ethanolicus_EGD52033.1                MEDLKANDKRSYIDNLIDFFRKRSIWMLHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYVSLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPRPEAVIDALQTLMEMIQSGEGGAYKKYKENYEYYKKNQDRVLRKTAPILGSSETESIYQEKEGNYET
Thermoanaerobacter_siderophilus_EIW00256.1               MEDLKANDKRSYIDNLIDFFRKRSIWILHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYVSLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPRPEAVIDALQTLMEMIQSGEGGAYKKYKENYEYYKKNQDRVLRKEAPILGSSETESIYQEKEGNYET
Thermoanaerobacter_thermohydrosulfuricus_EMT39652.1      MEDLKANDKRSYIDNLIDFFRKRSIWMLHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYVSLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPRPEAVIDALQTLMEMIQSGEGGAYKKYKENYEYYKKNQDRVLRKTAPILGSSETESIYQEKEGNYET
'Thermoanaerobacter wiegelii YP_004818841.1'             MEDLKANDKRSYIDNLIDFFRKRSIWILHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYVSLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPRPEAVIDALQTLMEMIQSGEGGAYKKYKENYEYYKKNQDRVLRKTAPILGSSETESIYQEKEGNYET
'Thermobrachium celere WP_018663230.1'                   ------------------------------------MELPPAMTSRWDVERFGVGPMATPRQADVLLVTGYVSLKTLKRIIRTYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPRPEAVIDALQTLMKMIQSGEAGAYKKYKENYEYYKANQDRVLKKTVPVLGQTPKNDLEGKDEDAKE-
'Thermotoga maritima NP_229019.1'                        ------MKERSIWERIADNLRSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAFNYLMEKIRKGEADGWKRYRENYEWYKQNQIRS-------LGEVYVHDEFHE-------
'Thermotoga sp. YP_001739623.1'                          ------MKERSIWERIADNLRSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAFNYLMEKIRKGEADGWKRYRENYEWYKQNQIRS-------LGEVYVNDEFHE-------
;
END;