#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 03, 2024; 7:40 GMT

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Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=15;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_EEB76411.1'
            'Caldanaerobacter subterraneus tengcongensis_NP_621744.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM91216.1'
            Dehalobacter_restrictus_AHF10737.1
            'Dehalobacter sp. WP_019226050.1'
            'Dehalobacter sp. WP_020491764.1'
            'Dehalobacter sp. YP_006910695.1'
            'Thermoanaerobacter brockii YP_004187137.1'
            Thermoanaerobacter_ethanolicus_EGD52043.1
            'Thermoanaerobacter pseudethanolicus YP_001666161.1'
            Thermoanaerobacter_siderophilus_EIW00246.1
            'Thermoanaerobacter sp. X513 YP_003902998.1'
            'Thermoanaerobacter sp. X514 YP_001661689.1'
            Thermoanaerobacter_thermohydrosulfuricus_EMT39687.1
            'Thermoanaerobacter wiegelii YP_004818831.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32948]

	TITLE 11495_alignment;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=250;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
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[                                                                    .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
'Caldanaerobacter subterraneus pacificus_EEB76411.1'        ------MPKESYSILLAGDSISRGVVLDREKNKYVITERNYVNLVKGRIKGTIKNISRFGATILKGIEMIKKEFVREKPDVVVLEFGGNDCDFDWEQVAKNPEMEHFPKTDYQLFIQKLKEIIEFLKEFDVVPVLMTLPPLDADRYLKWISKASKEMEENILRWLGSVTKIYWWQERYNSAIRIIAEETKTLVIDVRSAFLYYPDFRNFLCEDGIHPNEEGHKIMAHKIGEYLKKHYPFLLKI-------
'Caldanaerobacter subterraneus tengcongensis_NP_621744.1'   ------MPKESYSILLAGDSISRGVVLDREKNKYVITERNYVNLVKGRIKGTIKNISRFGATILKGIEMIKKEFVREKPDVVVLEFGGNDCDFDWEQVAKNPEMEHFPKTDYHLFIQKLKEIIEFLKEFEVVPVLMTLPPLDADRYLKWISKASKEVEENILRWLGSVTKIYWWQERYNSAIRVIAEETKTLVIDVRSAFLYYPDFRNFLCEDGIHPNEEGHKIMAHKIGEYLKKHYPFLLKI-------
'Caldanaerobacter subterraneus yonseiensis_ERM91216.1'      --MASVTLQNYYDIVVAGDSISRGVVYSEEKNKYVISDVNYVNLLKNNIKGTVKNIAKFGNTLLKGIDTLKRYLSKDKPDIVVIEFGGNDCDFNWEEIAKNPHAEHRPKTDFYIFKEKLKELIKSLDDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICADGIHPNERGHKIIAHKVYEYLQRNYTHLLKE-------
Dehalobacter_restrictus_AHF10737.1                          -------MKDNYTFLIVGDSISKGVIYNEDQGKYSLLDRNYVSLVQNSLKGMVYNAAKFGNTIKKGIERLNRDVSKTCPDIVLIEFGGNDCDFDWMQIASDPMAEHEPKTDFNVFGKMLTDTIISLKNNNIIPVLMTLPPLDADRYFKWISKNSNEIGKSILIWLGSVTKIYWWQERYNSMIVNIAEETRTRWIDVRGAFLKTPDFTQLLCIDGIHPNEDGHKVIAQKVTEYLRQNYNFLLKDSSADTLS
'Dehalobacter sp. WP_019226050.1'                           MDNNQPELKENYTFLIVGDSISKGVIYNEDQGKYSLLDRNYVSLVQNSLKGMVYNAAKFGNTIKKGIERLHRDVSKTRPDIVLIEFGGNDCDFDWMQIASDPMAEHEPKTDFNVFGKMLTDTIISLKNNNIIPVLMTLPPLDADRYFKWISKNSNEIGKNILIWLGSVTKIYWWQERYNSMIVNIAEETRTRWIDVRGAFLKTPDFTQLLCIDGIHPNEDGHKVIAQKVTEYLRQNYNFLLKDSSADSLS
'Dehalobacter sp. WP_020491764.1'                           MDNNQPELKDNYTFLIVGDSISKGVIYNEDQGKYSLLDKNYVSLVQNSLKGIVYNAAKFGNTIKKGIERLHRDVSKTRPDIVLIEFGGNDCDFNWMQIASDPMAEHEPKTDFNVFGKMLTDTIISLKNNNIIPVLMTLPPLDADRYFKWISKNSNEIGKNILIWLGSVTKIYWWQERYNSMIVNIAEETKTKWIDVRGAFLKTPDFTQLLCIDGIHPNEDGHKVIAQKVTEYLRQNYNFLLKDSSADSLS
'Dehalobacter sp. YP_006910695.1'                           MDNNQSELKENYTFLIVGDSISKGVIYNEDQGKYSLLDRNYVSLVQNSLKGMVYNAAKFGNTIKKGIERLNRDVSKTRPDIVLIEFGGNDCDFDWMQIASDPMAEHEPKTDFNAFGKMLTDTIISLKNNNIIPVLMTLPPLDADRYFKWISKNSNEIGKNILIWLGSVTKIYWWQERYNSMIVNIAEETKTKWIDVRGAFLKTPDFTQLLCIDGIHPNEDGHKVIAQKVTEYLRQNYNFLLKDSSADSLS
'Thermoanaerobacter brockii YP_004187137.1'                 --MAGMTLENYYDIVVAGDSISKGVVYSKEKSKYVISDVNYVNLLKDNIKGTVKNIAKFGNTLLKGIDILKRYLLKDKPDIVLIEFGGNDCDFDWEEIAKNPYDEHSPKTDFYIFKEKLKELIKSLEDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICTDGIHPNEKGHKIIAHKIYEYLQRNYAYLLKE-------
Thermoanaerobacter_ethanolicus_EGD52043.1                   --MASVTLQNYYDIVIAGDSISRGVVYSEEKNKYVISDVNYVNLLKNNIKGTVKNIAKFGNTLLKGIDTLKRYLSKDKPDIVVIEFGGNDCDFDWEEIAKNPYDEHRPKTDFYIFKEKLKELIKSLDDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLNYPDFRQFICADGIHPNEKGHKIIAHKIYEYLQRNYTYLLKE-------
'Thermoanaerobacter pseudethanolicus YP_001666161.1'        --MAGMTLENYYDIVVAGDSISKGVVYSKEKSKYVISDVNYVNLLKDNIKGTVKNIAKFGNTLLKGIDILKRYLLKDKPDIVLIEFGGNDCDFDWEEIAKNPYDEHSPKTDFYIFKEKLKELIKSLEDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICTDGIHPNEKGHKIIAHKIYEYLQRNYAYLLKE-------
Thermoanaerobacter_siderophilus_EIW00246.1                  --MASVTLQNYYDIVIAGDSISRGVVYSEEKNKYVISDVNYVNLLKNNIKGTVKNIAKFGNTLLKGIDTLKRYLSKDKPDIVVIEFGGNDCDFDWEEIAKNPYDEHRPKTDFYIFKEKLKELIKSLDDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICADGIHPNEKGHKIIAHKIYEYLQRNYTYLLKE-------
'Thermoanaerobacter sp. X513 YP_003902998.1'                --MAGMTLENYYDIVVAGDSISKGVVYSKEKSKYVISDVNYVNLLKDNIKGTVKNIAKFGNTLLKGIDILKRYLLKDKPDIVLIEFGGNDCDFDWEEIAKNPYDEHSPKTDFYIFKEKLKELIKSLEDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICTDGIHPNEKGHKIIAHKIYEYLQRNYAYLLKE-------
'Thermoanaerobacter sp. X514 YP_001661689.1'                --MAGMTLENYYDIVVAGDSISKGVVYSKEKSKYVISDVNYVNLLKDNIKGTVKNIAKFGNTLLKGIDILKRYLLKDKPDIVLIEFGGNDCDFDWEEIAKNPYDEHSPKTDFYIFKEKLKELIKSLEDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICTDGIHPNEKGHKIIAHKIYEYLQRNYAYLLKE-------
Thermoanaerobacter_thermohydrosulfuricus_EMT39687.1         --MASVTLQNYYDIVIAGDSISRGVVYSEEKNKYVISDVNYVNLLKNNIKGTVKNIAKFGNTLLKGIDTLKRYLSKDKPDIVVIEFGGNDCDFDWEEIAKNPYDEHRPKTDFYIFKEKLKELIKSLDDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICADGIHPNEKGHKIIAHKIYEYLQRNYTYLLKE-------
'Thermoanaerobacter wiegelii YP_004818831.1'                --MASVTLQNYYDIVIAGDSISRGVVYSEEKNKYVISDVNYVNLLKNNIKGTVKNIAKFGNTLLKGIDTLKRYLSKDKPDIVVIEFGGNDCDFDWEEIAKNPYDEHRPKTDFYIFKEKLKELIKSLDDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICADGIHPNEKGHKIIAHKIYEYLQRNYTYLLKE-------
;
END;