#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 03, 2024; 5:28 GMT

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Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=16;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_CDSM653_0930'
            'Caldanaerobacter subterraneus tengcongensis_NP_622543.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM93007.1'
            'Coprothermobacter platensis WP_018962526.1'
            'Coprothermobacter proteolyticus YP_002246548.1'
            'Thermoanaerobacter ethanolicus WP_003870982.1'
            'Thermoanaerobacter indiensis_WP_019907553.1'
            'Thermoanaerobacter italicus YP_003476667.1'
            'Thermoanaerobacter mathranii YP_003676613.1'
            'Thermoanaerobacter pseudethanolicus YP_001665445.1'
            'Thermoanaerobacter sp. YP_001663749.1'
            'Thermoanaerobacter wiegelii YP_004819690.1'
            'Thermoanaerobacterium saccharolyticum YP_006392732.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_003851721.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_007298418.1'
            'Thermoanaerobacterium xylanolyticum YP_004471286.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32950]

	TITLE 0891_alignment;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=221;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                      10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 ]
[                                                                       .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         . ]
'Caldanaerobacter subterraneus pacificus_CDSM653_0930'         ----------MKELALYILDLAQNSVRAGAKNVEIEIEENPQEDLLTVYVKDDGCGMKKEFLEKVTSPFVTTRKERRVGLGIPLFKELTEECEGTFEIFSEEGK------GTRIKGTFKLSSVNLIPIGDIASTIVSLIMSAPQ-IDIVYRFKK-----GSREFEFDTKKIREVLK-DVNL-NDVRVLSWIREYVEEGMKKSEMEV---------------
'Caldanaerobacter subterraneus tengcongensis_NP_622543.1'      ----------MKELALYILDLAQNSVRAGAKNVEIEIEENPQEDLLTVYVKDDGCGMKKEFLEKVTSPFVTTRKERRVGLGIPLFKELTEECEGTFEIFSEEGK------GTRIKGTFKLSSVNLIPIGDIASTIVSLIMSAPQ-IDIVYRFKK-----GSREFEFDTKKIREVLK-DVNL-NDVRVLSWIREYVEEGMKKSEMEV---------------
'Caldanaerobacter subterraneus yonseiensis_ERM93007.1'         ----------MKELALYILDLAQNSVRAGAKNVEIEIEENPQEDLLTVYVKDDGCGMKKEFLEKVTSPFVTTRKERRVGLGIPLFKELTEECEGTFEIFSEEGK------GTRIKGTFKLSSVNLIPIGDIASTIVSLIMSAPQ-IDIVYRFKK-----GSREFEFDTKKIREVLK-DVNL-NDVRVLSWIREYVEEGMKKSEMEV---------------
'Coprothermobacter platensis WP_018962526.1'                   MSRPSSGKKKVKELALYILDLAENSIAAGAKNITIDVHVNSARDELFIRISDDGKGMDPDFVRSVTNPFVTTRTQRRLGLGLPLFQDLVRQCEGTLNIVSEKGK------GTIIEAKMKRSSVDMVPIGDMGASIVSMIISNPA-LDIVYSFVL-----DDYSFVFDTKLIRETLK-DVSI-TEPAVLSWIAGYVNEGTKEIIFDVTKNINKNRGGIQAL-
'Coprothermobacter proteolyticus YP_002246548.1'               ----------MKELALYVLDLAQNSVVAGAKHITIDITADVKADHLLIRIVDDGKGMSPHLVERVTDPFFTSRKERRFGLGIPFFKDLVEQCGGTLTIKSKEGE------GTIIEGKLKLSSVDLVPLGDMGSTIVSLLVSNPE-LNLVYRFTL-----NDYSFTFDSAQIREVLQ-GVNI-TEPSVLNWIKDYVNEGSIEILPNINISKKEGAKKDYEAD
'Thermoanaerobacter ethanolicus WP_003870982.1'                ----------MKELALYILDLSQNSIRAGAKNIYIEINIDTSKDMLKVSIEDDGCGMNEKFLKKVTDPFITTRKERKVGLGIPLFKELAQLCEGNFEILSEEGK------GTKIIGTFKLSSVDLVPIGDMASTIVSLILSAPE-VDIVYKYSK-----DGYEFLFDTKELRKVLK-EVSL-NDIKVLNWIKEYVKENMKGDMEV----------------
'Thermoanaerobacter indiensis_WP_019907553.1'                  ----------MKELALYILDLSQNSIRAGAKNIYIEINIDTSKDMLKVSIEDDGCGMNEKFLKKVTDPFITTKKERKVGLGIPLFKELAQLCEGNFEIFSEEGK------GTKIIGTFKLSSIDLVPIGDMASTIVSLILSAPE-VDIVYKYSK-----DGYEFLFDTKELRKVLK-EVSL-NDIKVLNWIKEYVKENMKGDMEV----------------
'Thermoanaerobacter italicus YP_003476667.1'                   ----------MKELALYILDLAQNSIRARAKNICVEINIDTSKDMLKVSIEDDGCGMKEELLKKVTDPFVTTRKERKVGLGIPLFKELVQQCEGNFEIFSEEGK------GTKIMGTFKLSSVDLVPLGDIASTIVSLILSAPE-VDIVYKYNK-----DNHEFLFDTKELKKILK-GVNI-NDIKVLNWIKEYINENMKGDMEVE---------------
'Thermoanaerobacter mathranii YP_003676613.1'                  ----------MKELALYILDLSQNSIRAGAKNICIEINIDTSKDMLKVSIEDDGCGMKEELLKKVTDPFVTTRKERKVGLGIPLFKELVQQCEGNFEIFSEEGK------GTKIMGTFKLSSVDLVPLGDIASTIVSVILSAPE-VDIVYKYNK-----DNHEFLFDTKELKKILK-GVNI-NDIKVLNWIKEYINENMKGDMEVE---------------
'Thermoanaerobacter pseudethanolicus YP_001665445.1'           ----------MKELALYILDLSQNSIRAGAKNIYIEINIDTSKDMLKVSIEDDGCGMSKELLKKVTDPFITTRKERKVGLGIPLFKELAQLCEGNFEIFSVEGK------GTKIIGTFKLSSIDLVPIGDMASTIVSLILSAPD-LDIVYKYSK-----DNYEFLFDTKELKKILK-EVNI-NDIKVLSWIKEYVKENMKGDTEV----------------
'Thermoanaerobacter sp. YP_001663749.1'                        ----------MKELALYILDLSQNSIRAGAKNIYIEINIDTSKDMLKVSIEDDGCGMSEELLKKVTDPFITTRKERKVGLGIPLFKELAQLCEGNFEIFSVEGK------GTKIIGIFKLSSIDLVPIGDMASTIVSLILSAPD-LDIVYKYSK-----DGYEFLLDTKELRKVLK-EVSL-NDIKVLNWIREYVEENMKGDMEV----------------
'Thermoanaerobacter wiegelii YP_004819690.1'                   ----------MKELALYILDLSQNSIRAGAKNIYIEINIDTSKDMLKVSIEDDGCGMNEKFLKKVTDPFITTRKERKVGLGIPLFKELAQLCEGNFEIFSEEGK------GTKIIGTFKLSSIDLVPIGDMASTIVSLILSAPE-VDIVYKYSK-----DGYEFLFDTKELRKVLK-EVSL-NDIKVLNWIKEYVKENMKGDMEV----------------
'Thermoanaerobacterium saccharolyticum YP_006392732.1'         ----------MKELSLYILDIAQNSIKAGAKNISIKLEIDHKKDFMRLSIEDDGCGMDDELLKKAFDPFTTTRKERKVGLGLPFFKELALQCGGDAKIRSQKGV------GTYVEGTFNLSSVDLIPIGDIPSTIVSLIVSDSD-VDVLFEIIS-----DGRKFSFNTLDVKKLLN-GVKI-TEPSVLRWLIEYLEENINCVMEV----------------
'Thermoanaerobacterium thermosaccharolyticum YP_003851721.1'   ----------MKEFSLYILDIAQNSLKAGAKNVKIELDIDHSKDLLTVIVDDDGCGMEEEFLSKVFDPFTTTRKERKVGLGLSFFKELAQQCGGDAKIKSKKGI------GTHVEGTFKISSVDLIPIGDIPSTIISLIISDSE-VNILFVIKV-----DEKIFKFDTVEIKKVLD-GVKI-TEPSVLKWLLEYLTENLKCVMEV----------------
'Thermoanaerobacterium thermosaccharolyticum YP_007298418.1'   ----------MKEFSLYILDIAQNSLKAGAKNVKIELDIDHNKDLLTVIVDDDGCGMEEEFLSKVFDPFTTTRKERKVGLGLSLFKELALQCGGDVKIESKKGI------GTHVEGTFKISSVDLIPIGDIPSTIISLIISDSE-VNILFVIKV-----DEKIFKFDTVEIKKVLD-GVKI-SEPSVLKWLREYLTENLKCVMEV----------------
'Thermoanaerobacterium xylanolyticum YP_004471286.1'           ----------MKELSLYILDIAQNSIKAGAKNISIKLEIDHKKDFMRLSIEDDGCGMDEELLKKAFDPFTTTRKERKVGLGLPFFKELALQCGGDAKIRSQKGV------GTYVEGTFNLSSVDLIPIGDIPSTIVSLIVSDSD-VDVLFEIIS-----DGKKFSFNTLDVKKLLN-GVKI-TEPSVLRWLIEYLEENINCVMEV----------------
;
END;