#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 03, 2024; 5:34 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=9;
        TAXLABELS
            'Caldanaerobacter subterraneus tengcongensis_NP_621825.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM91336.1'
            'Thermoanaerobacter ethanolicus WP_003868939.1'
            'Thermoanaerobacter italicus YP_003477428.1'
            'Thermoanaerobacter mathranii YP_003677324.1'
            'Thermoanaerobacter wiegelii YP_004818930.1'
            'Thermoanaerobacterium saccharolyticum YP_006391300.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_003850792.1'
            'Thermoanaerobacterium xylanolyticum YP_004469843.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32953]

	TITLE EchC_alignment;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=363;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                      10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360   ]
[                                                                       .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .   ]
'Caldanaerobacter subterraneus tengcongensis_NP_621825.1'      ----------------MGLKEFIEKSFKKSPWVLHYNASSCNGCDIEILACMTPIYDMERFGMMNVGNPKHADILVVTGSVNTRNKDVLKNIYDQMPEPKVVVAVGVCAATGGVFRDTYNVLGGVDKVIPVDVYVPGCPAKPEAIIDGLYKATEILKEKYKK--MGKAEEVLK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
'Caldanaerobacter subterraneus yonseiensis_ERM91336.1'         ----------------MGLKEFIEKSFKKSPWVLHYNASSCNGCDIEILACMTPIYDMERFGMVNVGNPKHADILVVTGSVNTRNKDVLKNIYDQMPEPKVVVAVGVCAATGGVFRDTYNVLGGVDKVIPVDVYVPGCPAKPEAIIDGLYKATEILKEKYKK--MGKAEEVLK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacter ethanolicus WP_003868939.1'                ----------------MGLKEFVEKSFKKSPWVLHYNCSSCNGCDIEILACMTPLYDMERFGMVNVGNPKHADILVVTGTVNTRNKEVLKNIYDQMPDPKVVVAVGVCAATGGVFREAYNVIGGIDKVIPVDVYVPGCPAKPEAIIDGLYKAAEILKEKYEK--MGKAEEVLK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacter italicus YP_003477428.1'                   ----------------MGLKEFIEKSFKKSPWVIHYDCGSCNGCDIELLSCMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKVVLKNIYDQMPEPKVVVAVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGCPAKPEAIIDGLYKATEILKEKYDK--MAKAEEVLK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacter mathranii YP_003677324.1'                  ----------------MGLKEFIEKSFKKSPWVIHYDCGSCNGCDIELLSCMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKVVLKNIYDQMPEPKVVVAVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGCPAKPEAIIDGLYKATEILKEKYDK--MAKTEEVLK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacter wiegelii YP_004818930.1'                   ----------------MGLKEFVEKSFKKSPWVLHYNCSSCNGCDIEILACMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKEVLKNIYDQMPEPKVVVAVGVCAATGGIFREAYNVLGGIDKVIPVDVYVPGCPAKPEAIIDGLYKAAEILKEKYEK--MGKAEEVLK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacterium saccharolyticum YP_006391300.1'         ----------------MGLKEFVKKSFSKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKDVLKNVYDMMPDPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGCPAKPEAMIDGLYKAAQILKDKYSRREVIVSAKSLG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacterium thermosaccharolyticum YP_003850792.1'   ----------------MGLKEFVKKSFSKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKDVLKNVYDMMPEPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYIPGCPAKPEAMIDGLYKAAQILKDKYSRREVIVSAKSLG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacterium xylanolyticum YP_004469843.1'           ----------------MGLKEFVKKSFSKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKDVLKNVYDMMPDPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGCPAKPEAMIDGLYKAAQILKEKYSRKEVIVSAKSLG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
;
END;