#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 03, 2024; 4:48 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=11;
        TAXLABELS
            'Caldanaerobacter subterraneus tengcongensis_NP_621826.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM91337.1'
            'Coprothermobacter platensis WP_018962514.1'
            'Thermoanaerobacter WP_004399988.1'
            'Thermoanaerobacter ethanolicus WP_003868940.1'
            'Thermoanaerobacter indiensis WP_019907185.1'
            'Thermoanaerobacter italicus YP_003477427.1'
            'Thermoanaerobacter wiegelii YP_004818931.1'
            'Thermoanaerobacterium saccharolyticum YP_006391301.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_003850793.1'
            'Thermoanaerobacterium xylanolyticum YP_004469844.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32954]

	TITLE EchD_alignment;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=649;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                      10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640         ]
[                                                                       .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
'Caldanaerobacter subterraneus tengcongensis_NP_621826.1'      ----------------------------------------------MIKTREVK-LEEVEKEAKYYYDNGYRFVTETCLEED-GKFRIIYTFEK-D--SE--------------------LESFHTY-V-SPEEEVPSISKVYFAAIPVENEIHEMFGLRFKNLALDFQGLLFLGEFAP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IS-PQA-SIEIMRRDK------GDKNE--------------------------------------------------------------------------------------------------------------------------------------
'Caldanaerobacter subterraneus yonseiensis_ERM91337.1'         ----------------------------------------------MIKTREVK-LEEVEKEAKYYYDNGYRFVTETCLEED-GKFRIIYTFEK-D--SE--------------------LESFHTY-V-SPEEEVPSISKVYFAAIPVENEIHEMFGLRFKNLALDFQGLLFLGEFAP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IS-PQA-SIEIMRRDK------GDKNE--------------------------------------------------------------------------------------------------------------------------------------
'Coprothermobacter platensis WP_018962514.1'                   ----------------------------------------------MIEAKEIT-LDNLLSEVKNYHDNGYRLVTTTCMEVDDDKLEILYHFDK-D--FK--------------------LENLRLT-V-DKNQTIPSISSIYFCAVLSENEMQDMFGLKIDGMVVDYGGKFLLGEDSP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LS-PMA-HIQIVAKEQ------GENKEGGNNA---------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacter WP_004399988.1'                            ----------------------------------------------MINSREVK-VDEIEKEAKYYYDNGYRFVTETCLEED-GKFKIIYTFER-E--YE--------------------LENFHVY-V-NPAEEVPSISKIYFAALLVENEIQELFGVKFKNLAIDFEGLLFLGEYAP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IS-PQA-SIEIMRRDK------GDKNE--------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacter ethanolicus WP_003868940.1'                ----------------------------------------------MITTKEIK-LEDIEKETKYYYENGYRFVTETCLEEE-GKFKIIYTFEK-D--YQ--------------------MDSFHVF-V-SPQEEVPSISKIYFAALPVENEIHEMFGMKFKNLVLDFQGLLFLGEYAP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IS-PQA-SIEIMRRDK------GDKNE--------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacter indiensis WP_019907185.1'                  ----------------------------------------------MINSREVK-VDEIEKEAKYYYDNGYRFVTETCLEED-GKFKIIYTFER-E--YE--------------------LENFHVY-V-NPAEEVPSISKIYFAALLIENEIQELFGVKFKNLAIDFEGLLFLGEYAP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IS-PQA-SIEIMRRDK------GDKNE--------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacter italicus YP_003477427.1'                   ----------------------------------------------MINSREVK-IDEIEKEAKYYYDNGYRFVTETCLEED-GKFKIIYTFAK-E--YE--------------------LENFHVY-V-NTSEEVPSISKIYFAALLVENEIQEMFGLKFKNLVIDFEGLLLLGEYSP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IS-PQA-SIEIIKKNK------GDKNE--------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacter wiegelii YP_004818931.1'                   ----------------------------------------------MINSREVK-VDEIEKEAKYYYDNGYRFVTETCLEED-GKFKIIYTFER-D---E--------------------LENFHVY-V-NPAEEVPSISKIYFAALLVENEIQELFGVKFKNLAIDFEGLLFLGEYAP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IS-PQA-SIEIMRRDK------GDKNE--------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacterium saccharolyticum YP_006391301.1'         ---------------------------------------------MIVNSREVE-IGNLKNEVKKYHDGGYRFVTETCLNLE-DKFKIIYTFAI-G--YD--------------------LENIHII---TDGKNVPSVSDIYSCALAVENEIKELFGVEFDGLAVDFGGNFMLGESSP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IS-PQA-DIEIIRREK------GGKNE--------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacterium thermosaccharolyticum YP_003850793.1'   ---------------------------------------------MIVNSREVT-VDNLKKEVKKYHDDGYRFVTETCLNFE-GQFKIIYTFAK-G--YD--------------------LDNIHIV---TDGKNVPSVSDVYSCALLVENEIKELFGVEFDGLVVDFGGKLMLGESSP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IS-PQA-DIEIIRREK------GGKNE--------------------------------------------------------------------------------------------------------------------------------------
'Thermoanaerobacterium xylanolyticum YP_004469844.1'           ---------------------------------------------MIVNSREVE-IGNLKSEVKKYHDGGYRFVTETCLNLE-DKFKIIYTFAI-G--YD--------------------LENIHII---TDGKNVPSVSDIYSCALAVENEIKELFGVEFDGLAVDFGGNFMLGESSP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IS-PQA-DIEIIRREK------GGKNE--------------------------------------------------------------------------------------------------------------------------------------
;
END;