#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 03, 2024; 8:07 GMT

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Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=15;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_CDSM653_0105'
            'Caldanaerobacter subterraneus tengcongensis_NP_621827.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM91338.1'
            'Coprothermobacter platensis WP_018962513.1'
            'Thermoanaerobacter ethanolicus WP_003868941.1'
            'Thermoanaerobacter indiensis WP_019907186.1'
            'Thermoanaerobacter italicus YP_003477426.1'
            'Thermoanaerobacter mathranii YP_003677322.1'
            'Thermoanaerobacter siderophilus WP_006569905.1'
            'Thermoanaerobacter thermohydrosulfuricus WP_004399987.1'
            'Thermoanaerobacter wiegelii YP_004818932.1'
            'Thermoanaerobacterium saccharolyticum YP_006391302.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_003850794.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_007297552.1'
            'Thermoanaerobacterium xylanolyticum YP_004469845.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32955]

	TITLE EchE_alignment;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=424;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                      10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420    ]
[                                                                       .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .    ]
'Caldanaerobacter subterraneus pacificus_CDSM653_0105'         -------MSEK-STIPFGPQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGICSAIHGETYCQAVEKLIGIDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLSWRIREKVMDILEATAGNRVVISVNIVGGVRRDIDSEQAKWVLAQLKEVEEGL-KEIEKIVRDNYTLKKRTVGIGVLSKEEAYMLGAVGPTLRGSGVPIDTRTLGYAAYKYLDFEPVVEKDGDTYARTLVRLREMFQSIDLVRQAISKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVIERAEQPRGEVFYYIKSNGGKYLDRLRIRTPTFANLAALLHMLPGCTLADVPVLVLTIDPCISCTER
'Caldanaerobacter subterraneus tengcongensis_NP_621827.1'      -------MSEK-STIPFGPQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGICSAIHGETYCQAVEKLIGIDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLSWRIREKVMDILEATAGNRVVISVNIVGGVRRDIDSEQAKWVLAQLKEVEEGL-KEIEKIVRDNYTLKKRTVGIGVLSKEEAYMLGAVGPTLRGSGVPIDTRTLGYAAYKYLDFEPVVEKDGDTYARTLVRLREMFQSIDLVRQAISKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVIERAEQPRGEVFYYIKSNGGKYLDRLRIRTPTFANLAALLHMLPGCTLADVPVLVLTIDPCISCTER
'Caldanaerobacter subterraneus yonseiensis_ERM91338.1'         ----MIRMSEK-STIPFGPQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGICSAIHGETYCQAVEKLIGIDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLSWRIREKVMDILEATAGNRVVISVNIVGGVRRDIDSEQAKWVLAQLKEVEEGL-KEIEKIVRDNYTLKKRTVGIGVLSKEEAYMLGAVGPTLRGSGVPIDTRTLGYAAYKYLDFEPVVEKDGDTYARTLVRLREMFQSIDLVRQAISKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVIERAEQPRGEVFYYIKSNGGKYLDRLRIRTPTFANLAVLLHMLPGCTLADVPVLVLTIDPCISCTER
'Coprothermobacter platensis WP_018962513.1'                   -----MPDSNI-SFIPFGPQHPVLPEPIHLRLVVENEKVVEALPTVGYVHRGLEKMVEAKDVNQMIYVVERICGICSCMHAMAYCQGIEELMNVEIPERAKYLRVIWAELHRMHSHLLWLGLLADSFGYESLFMQTWRIRERVMDILDKTAGNRVIISVNVIGGVRRDIDTEMQKWVLQSLDAIEKDL-REIYNVMKDDYTVKQRTVGVGVLSADDARELGLVGPMLRASGVASDHRMTGYAAYKDLDFEPVVETAGDSYARMIVRMKELFQSIDLIRKAFARMP-EG--D---------------------------------------------------IAVKVRGN--PTGEVISRVEQSRGEVLYYIKADGTKNLSRLRVRTPTFANIAALFKILPGCSLSDVPVLVLTIDPCISCTER
'Thermoanaerobacter ethanolicus WP_003868941.1'                ----MIRMSEK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLELLVKKKDFNQMVYVVDHICGICSAMHGQAYCQAVEELIGVDVPERAKYLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDINSEQAKWLLNELKEVEEGL-KELDKIVRNNYTIKQRTVGVGVLSKDEAYKLGAVGPTLRGSGVPIDMRTTGYAAYKDLNFEPIVEKDGDTYARTIVRVKEMFQSIDLARQAISKLP-EG--E---------------------------------------------------INVKVKPN-LPAGEVISRVEQPRGEVFYYIKSTGGKYLDRLRIRTPTFANLASLLHMLPGSTLADVPVLVLTIDPCISCTER
'Thermoanaerobacter indiensis WP_019907186.1'                  -------MSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGFVHRGLEMLVQKKDFNQMVYVVDHICGICSAMHGQAYCQAVEELIGIDVPERAKYLRVVWAELHRIHSHLLWFGLLADAFGFENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDIDTEQAKWLLNELKEVEEGL-KELEKIVKNNYTIKQRTVGIGVLSKEDAYMFGAVGPTLRGSGVPIDIRTTGYAAYGNLDFEPVVETDGDTYARTIVRVREMFQSIDLVRQALNKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVITRVEQPRGEVFYYIKSSGGKNLDRLRIRTPTFANLASLLHMLPGSTLADVPVLVLTIDPCISCTER
'Thermoanaerobacter italicus YP_003477426.1'                   -------MSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGYVHRGLEMLAQKKDVNQMVYVVERVCGICSAMHGQAYCQGVESLLNIEVPERAKYLRVIWAELHRIHSHLLWLGLMADAFGFENLFMLTWRIREKIMDILEATSGNRVIISVNIIGGVRKDIDGEQAKWILKELDKIEKEL-KEVNKVVRNNYTIKQRTVGIGVLTKDDAYILGATGPVAKGSGVAIDMRMTGYAAYGDLDFEPVTETDGDTYARTIVRMREIFQSIDLVRQAINKMP-EG--E---------------------------------------------------IAIKVKGN-LPAGEVISRVEQSRGEVFYYLKSSGGKNLERLRIRTPTFANLAALLKMLPGSSLADVPVLVLTIDPCISCTER
'Thermoanaerobacter mathranii YP_003677322.1'                  -------MSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGYVHRGLEMLAQKKDVNQMVYVVERVCGICSAMHGQAYCQGVESLLNIEVPERAKYLRVIWAELHRIHSHLLWLGLMADAFGFENLFMLTWRIREKIMDILEATSGNRVIISVNIIGGVRKDIDGEQAKWILKELDKIEEEL-KEVNKVVRNNYTIKQRTVGIGVLTKDDAYILGATGPVAKGSGVAIDMRMTGYAAYGDLDFEPVTETDGDTYARTIVRMREIFQSIDLVRQAINKMP-EG--E---------------------------------------------------IAIKVKGN-LPAGEVISRVEQSRGEVFYYLKSSGGKNLERLRIRTPTFANLAALLKMLPGSSLADVPVLVLTIDPCISCTER
'Thermoanaerobacter siderophilus WP_006569905.1'               ----MIRMSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGFVHRGLEMLVQRKDFNQMVYVVDHICGICSAMHGQAYCQAVEELIGIDVPERAKYLRVVWAELHRIHSHLLWFGLLADAFGFENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDIDTEQAKWLLNELKEVEEGL-KELEKIVKNNYTIKQRTVGIGVLSKEDAYMFGAVGPTLRGSGVPIDMRTTGYAAYGNLDFEPVVETDGDTYARTIVRVREMFQSIDLVRQALNKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVITRVEQPRGEVFYYIKSSGGKNLDRLRIRTPTFANLASLLHMLPGSTLADVPVLVLTIDPCISCTER
'Thermoanaerobacter thermohydrosulfuricus WP_004399987.1'      ----MIRMSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGFVHRGLEMLVQKKDFNQMVYVVDHICGICSAMHGQAYCQAVEELIGIDVPERAKYLRVVWAELHRIHSHLLWFGLLADAFGFENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDIDTEQAKWLLNELKEVEEGL-KELEKIVKNNYTIKQRTVGIGVLSKEDAYMFGAVGPTLRGSGVPIDIRTTGYAAYGNLDFEPVVETDGDTYARTIVRVREMFQSIDLVRQALNKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVITRVEQPRGEVFYYIKSSGGKNLDRLRIRTPTFANLASLLHMLPGSTLADVPVLVLTIDPCISCTER
'Thermoanaerobacter wiegelii YP_004818932.1'                   ----MIRMSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPSFGFVHRGLEMLVQKKDFNQMVYVVDHICGICSAMHGQAYCQAVEELIGIDVPERAKYLRVVWAELHRIHSHLLWFGLLADAFGFENLFMLSWRIREKIMDILEATAGNRVIISVNIVGGVRRDIDTEQAKWLLNELKEVEEGL-KELEKIVKNNYTIKQRTVGIGVLSKEDAYMFGAVGPTLRGSGVPIDMRTTGYAAYGNLDFEPVVETDGDTYARTIVRVREMFQSIDLVRQALNKMP-EG--E---------------------------------------------------INVKVKPN-LPAGEVITRVEQPRGEVFYYIKSSGGKNLDRLRIRTPTFANLASLLHMLPGSTLADVPVLVLTIDPCISCTER
'Thermoanaerobacterium saccharolyticum YP_006391302.1'         -------MSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLETLAQKKDFNQMVYVVERVCGICSCMHGQDYCEAIEELMGVQVPVRAEYLRTIWAELHRIHSHLLWLGLFADAFGFENLFMQTWKIREKIMDILEATSGNRVIISVNIVGGVRKDINSEQAKWILKELDDVERQL-KDINDVVMNNYTVKQRTVGIGVLTKEEAYELGATGPMAKGSGVDLDLRTTGYAAYKYLDFEPIVEKAGDSYARNLVRMREIFQSIDLIRQALGKMP-EG--E---------------------------------------------------ISVPVKGN-PPAGEVISRLEQSRGEVVYYIKSNGTKFLDRLRIRTPTFANIPALLKILPGSHLQDVPVLILTIDPCISCTER
'Thermoanaerobacterium thermosaccharolyticum YP_003850794.1'   -------MSEK-GTIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLETLAQKKDFNQMVYVVERVCGICSCMHGQDYCQAIEELMGIEVPIRAEYLRTIWAELHRIHSHLLWLGLFADAFGFENLFMQTWKIREKIMDILEATSGNRVIISVNIVGGVRKDISNDQAKWILRELDDVEKQL-KDINDVVMNNYTVKERTVGIGVLTKEEAYELGATGPMAKGSGVDLDLRTTGYAAYKYLDFEPIVEKSGDSYARNLVRMKEIFQSIDLIRQALSKMP-EG--D---------------------------------------------------INVPVKGN-PPAGEVISRLEQSRGEVVYYIKSNGTKFLDRLRIRTPTFANIPALLKILPGSQLQDVPVLILTIDPCISCTER
'Thermoanaerobacterium thermosaccharolyticum YP_007297552.1'   -------MSEK-GTIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLETLAQKKDFNQMVYVVERVCGICSCMHGQDYCQAIEELMGIEVPIRAEYLRTIWAELHRIHSHLLWLGLFADSFGFENLFMQTWKIREKIMDILEATSGNRVIISVNIVGGVRKDISNDQAKWILRELDDVEKQL-KDINDVVMNNYTVKERTVGIGVLTKEEAYELGATGPMAKGSGVDLDLRTTGYAAYKYLDFEPIVEKSGDSYARNLVRMKEIFQSIDLIRQALSKMP-EG--D---------------------------------------------------INVPVKGN-PPAGEVISRLEQSRGEVVYYIKSNGTKFLDRLRIRTPTFANIPALLKILPGSQLQDVPVLILTIDPCISCTER
'Thermoanaerobacterium xylanolyticum YP_004469845.1'           -------MSDK-STIPFGPQHPVLPEPIHLKLVVEDEKVVEAYPAFGFVHRGLETLAQKKDFNQMVYVVERVCGICSCMHGEDYCEAIEELMGVQVPVRAEYLRTIWAELHRIHSHLLWLGLFADAFGFENLFMQTWKIREKIMDILEATSGNRVIISVNIVGGVRKDINSEQAKWILKELDEVERQL-KDINDVVMNNYTVKQRTVGIGVLTKEEAYELGATGPMAKGSGVDLDLRTTGYAAYKYLDFEPIVEKDGDSYARNLVRMREIFQSIDLVRQALGKMP-EG--E---------------------------------------------------ISVPVKGN-PPAGEVISRLEQSRGEVVYYIKSNGTKFLDRLRIRTPTFANIPALLKILPGSHLQDVPVLILTIDPCISCTER
;
END;