#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 03, 2024; 7:29 GMT

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Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=14;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_CDSM653_0107'
            'Caldanaerobacter subterraneus tengcongensis_NP_621829.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM91340.1'
            'Clostridium celatum WP_005210164.1'
            'Coprothermobacter platensis WP_018962511.1'
            'Thermoanaerobacter ethanolicus WP_003868943.1'
            'Thermoanaerobacter italicus YP_003477424.1'
            'Thermoanaerobacter mathranii YP_003677320.1'
            'Thermoanaerobacter wiegelii YP_004818934.1'
            'Thermoanaerobacterium saccharolyticum YP_006391304.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_003850796.1'
            'Thermoanaerobacterium thermosaccharolyticum YP_007297554.1'
            'Thermoanaerobacterium xylanolyticum YP_004469847.1'
            'environmental samples WP_022167113.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32961]

	TITLE HypA_alignment;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=154;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                      10        20        30        40        50        60        70        80        90        100       110       120       130       140       150    ]
[                                                                       .         .         .         .         .         .         .         .         .         .         .         .         .         .         .    ]
'Caldanaerobacter subterraneus pacificus_CDSM653_0107'         ------------------------------MLVEEAEKRKVKKVTKVTVVIGELTGIESESVKFYFDILT-ENTVAEGAELVFKIVRAQFKCTQCGNVFERSNFTFK---CPVCGGQ-GVLIDKRGKEFYIESIEVE-----------------
'Caldanaerobacter subterraneus tengcongensis_NP_621829.1'      ------------------MHELSVTQGLVDMLVEEAEKRKVKKVTKVTVVIGELTGIESESVKFYFDILT-ENTVAEGAELVFKIVRAQFKCTQCGNVFERSNFTFK---CPVCGGQ-GVLIDKRGKEFYIESIEVE-----------------
'Caldanaerobacter subterraneus yonseiensis_ERM91340.1'         ------------------MHELSVTQGLVDMLVEEAEKRKVKKVTKVTVVIGELTGIESESVKFYFDILT-ENTVAEGAELVFKIVRAQFKCTQCGNVFERSNFTFK---CPICGGQ-GVLIDKRGKEFYIESIEVE-----------------
'Clostridium celatum WP_005210164.1'                           ------------------MHELAVTQSILKICIDEGEKYNVKRIKKLNIKVGELTDLVPSCISYYFKIVA-KDTIAEEAEINIEKIKVAITCNKCGYKGELGENNYV---CPKCKGN-NYKIIK-GREFYLDTMEVD-----------------
'Coprothermobacter platensis WP_018962511.1'                   ------------------MHELSVTQSILDMAVEEAKKAGASSVDKISIVLGELTGIAEDCVRFYFDIIK-KDTLAENAQLSFSHVPAVLKCKKCGYEFERQTFSFT---CPKCGSP-GVLIDK-GKELYIDHIEVSFDGNKVGKEHT------
'Thermoanaerobacter ethanolicus WP_003868943.1'                ------------------MHELSVTQSLVDMVLEEAEKREVKKVTKVTVVIGELTGLESESIKFYFDILS-ENTVAEGAELTFKIIKAQFKCRQCGTIFERSNFTFN---CPVCGGV-GVLVNK-GKEFYIESIEVE-----------------
'Thermoanaerobacter italicus YP_003477424.1'                   ------------------MHELSVTQSLVDMVLEEAQKREIKKVTKVTIVIGELTGLESESIQFYFGVLS-ENTVAEGAELVFKKIKAQFKCGQCGNIFERLNFTFN---CPVCGST-GVLVDK-GKEFYIESIEVE-----------------
'Thermoanaerobacter mathranii YP_003677320.1'                  ------------------MHELSVTQSLVDMVLEEAQKREIKKVTKVTIVIGELTGLESESIQFYFGVLS-ENTVAEGAELVFKKIKAQFKCGQCGNIFERVNFTFN---CPVCGST-GVLVDK-GKEFYIESIEVE-----------------
'Thermoanaerobacter wiegelii YP_004818934.1'                   ------------------MHELSVTQSLVDILLEEAQKRNVKKVTKVTVVIGELTGLESESIRFYFDVLS-ENTVAEGAELVFKMIKAQFKCRQCGNIFERTNFTFN---CPVCGAT-GVLVDK-GKEFYIESIEVE-----------------
'Thermoanaerobacterium saccharolyticum YP_006391304.1'         ------------------MHELSITESIVNMVSDEAKKRNVNKVTKINIVLGELTGFEEESIRFYFEVLS-EGTPLYGAKLDFKKVKAEFKCRSCGMIYNRGNFTFK---CPYCGSS-GVLIEK-GKELYIDSIDVE-----------------
'Thermoanaerobacterium thermosaccharolyticum YP_003850796.1'   ------------------MHELSITESIVNMVSDEVKKRNINKVTKINIVLGELTGFEEDSIKFYFDVLS-EGTPLYGAILNFKRVKAEFKCRNCGMIYNRENFTFK---CPYCGSS-GVLIEK-GKELYIDSIDVE-----------------
'Thermoanaerobacterium thermosaccharolyticum YP_007297554.1'   ------------------MHELSITESIVNMVSDEVKKRNINKVTKINIVLGELTGFEEDSIKFYFDVLS-EGTPLYGAELNFKRVKAEFKCRNCGMIYNRGNFTFK---CPYCGSS-GVLIEK-GKELYIDSIDVE-----------------
'Thermoanaerobacterium xylanolyticum YP_004469847.1'           ------------------MHELSITESIVNMVSDEVKKRNVNKVTKINIVLGELTGFEEESIKFYFDVLS-EGTPLYGAKLDFKKVKAEFKCRSCGMIYNRGNFTFK---CPYCGSS-GVLIEK-GKELYIDSIDVE-----------------
'environmental samples WP_022167113.1'                         ------------------MHELSVTEGILKICLDEGKKHNIEKIKKINIVVGELTGLMPNCISYYFNIAA-KGTLAEDAEISIAYEKVMIKCHNCGFEGKFINKQYV---CPSCGKS-DYKIVK-GREFYIDTMEVE-----------------
;
END;