@ARTICLE{TreeBASE2Ref25040,
author = {Chien-Hsun Huang and Renran Sun and Yi Hu and Liping Zeng and Ning Zhang and Liming Cai and Qiang Zhang and Marcus A Koch and Ihsan A. Al-Shehbaz and Patrick P Edger and J. Chris Pires and Dun-Yan Tan and Yang Zhong and Hong Ma},
title = {Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution},
year = {2015},
keywords = {ancestral character reconstruction, Brassicaceae, divergence time estimation, orthologous nuclear gene, phylogeny, transcriptome},
doi = {},
url = {http://},
pmid = {},
journal = {Molecular Biology and Evolution},
volume = {},
number = {},
pages = {},
abstract = {Brassicaceae is one of the most diverse and economically important angiosperm families with widely cultivated vegetable crops and scientifically important model plants, such as Arabidopsis thaliana. The evolutionary history, ecological, morphological and genetic diversity and abundant resources and knowledge of Brassicaceae make it an excellent model family for evolutionary studies. Recent phylogenetic analyses of the family revealed three major lineages (I, II, and III), but relationships among and within these lineages remain largely unclear. Here, we present a highly supported phylogeny with six major clades using nuclear markers from newly sequenced transcriptomes of 32 Brassicaceae species and datasets from additional taxa for a total of 81 species spanning 32 of 49 tribes. Clade A consisting of Lineage I and Macropodium nivale is sister to a combined clade of Clade B (with Lineage II and others) and a new Clade C. The ABC clade is sister to Clade D with species weakly associated with Lineage II and Clade E (Lineage III) is sister to ABCD. Clade F (the tribe Aethionemeae) is sister to the remainder of the family. Molecular clock estimation reveals an early radiation of major clades near the boundary of Eocene and Oligocene and subsequent nested radiations of several tribes of previously polytomous Expanded Lineage II. Reconstruction of ancestral morphological states during the Brassicaceae evolutionary history indicates prevalent parallel (convergent) evolution of several traits over deep time across this family. These results form a foundation for future evolutionary analyses of structures and functions across Brassicaceae.}
}
You have reached this page using a special URL that is intended to be used
by journal editors and reviewers or referees of a paper that is under
consideration for publication. This URL gives you access to the submitted
data and metadata associated with analyses and results presented in the
paper under review. Please carefully examine the data paying special
attention to the following:
The citation data (authors, year, citation, abstract) should be
complete, except for information that is not yet known (e.g. volume or
page numbers).
Verify that nexus files are error-free and executable by software
programs (e.g. PAUP, Mesquite, MacClade, etc). Please make sure that the
taxon labels for trees are identical, or a subset of, the taxon labels in
data matrices connected by way of an analysis. If taxon labels in trees do
not match with taxon labels in associated data matrices, the data will not
be useful to the scientific community.
Verify that data are not missing and that opportunities to supply
valuable metadata are not overlooked. For example, TreeBASE can store
Genbank accession numbers, museum voucher IDs, latitude and longitudes for
specimen localities, character names and character state names for
morphological data, etc. Including these metadata are sometimes overlooked
by submitting authors, yet sharing this metadata is extremely valuable to
the scientific community. Please use your power as a reviewer to encourage
the sharing of richly-annotated metadata.
Verify that analyses are not missing and that, where possible, analysis
entries include software commands (e.g. the contents of a PAUP block or
MrBayes block) so that analyses can be replicated easily (e.g. commands
that describe substitution models, data partitions, and heuristic search
parameters).
Verify that taxon labels are mapped against TreeBASE's taxonomic
dictionary. Data in TreeBASE can only be found using a taxon name search if
the taxon labels are properly mapped.
By clicking the 'OK' button below, you agree to keep these data
confidential; you agree not to retain these data after completing your report
to the journal editor; you agree not to use these data or knowledge of these
data for the purposes of your research until and unless the paper under
review has been published and the data have been made available to the
general public; you agree to keep the URL confidential.
Citation title: "Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution".
Study name: "Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution".
This study is part of submission 18202
(Status: Published).