#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 23, 2024; 2:20 GMT TreeBASE (cc) 1994-2008 Study reference: Heenan P., Joly S., & Lockhart P. 2009. A Pleistocene inter-tribal allopolyploidization event precedes the species radiation of Pachycladon (Brassicaceae) in New Zealand. Molecular Phylogenetics and Evolution, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2250] BEGIN TAXA; TITLE MS; DIMENSIONS NTAX=22; TAXLABELS Arabidopsis_lyrata_clone1 Arabidopsis_thaliana Boechera_holboellii_clone1 Brassica_napus Capsella_bursapastoris_clone1 Capsella_bursapastoris_clone2 Crucihimalaya_mollissima_clone1 Lepidium_apelatum_clone1 Olimarabidopsis_cabulica_clone2 Olimarabidopsis_cabulica_clone3 P_toxophylla_clone1 Pachycladon_enysii_1_1_A Pachycladon_enysii_1_1_B Pachycladon_exilis_A Pachycladon_exilis_B Pachycladon_fastigiata_4_1_A Pachycladon_fastigiata_4_1_B Pachycladon_latisiliqua_1_5_A Pachycladon_latisiliqua_1_5_B Pachycladon_wallii_1_1_A Pachycladon_wallii_1_1_B Transberingia_bursifolia_clone3 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3401] TITLE Malate_Synthase; LINK TAXA = MS; DIMENSIONS NCHAR=515; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_lyrata_clone1 CGGAGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATGAGAGGGCATGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCATGACAAGTCAAGGAACAGAGTTTATAAGCTCAACGACCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGATTTGGTCCATTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATTTGGAACAGCGTGTTTGAGCGAGCTGAGAAGATGGCTGGGATAGAGAGAGGAAGCATTAGAGCAACAGTGCTGATCGAGACCCTCCCGGCTGTCTTCCAGATGAATGAGATACTATATGAACTGCGTGATCACACTGTCGGTTTAAACTGTGGAAGAT Arabidopsis_thaliana CGGAGCTAAAGTCTTTATGGCTGATTTCGAGGACGCTTTGTCTCCAAGCTGGGAGAATCTGATGAGAGGGCATGTGAACCTGAAAGATGCAGTGGATGGATCCATTACGTTCCACGACAAGTCAAGGAACAGAGTTTACAAGCTCAACGACCAAACCGCTAAGCTTTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGTTTCGGTCCATTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAACAGTGTTTTTGAGCGTGCTGAGAAGATGGCTGGGATAGAGAGAGGAAGCATTAGAGCAACTGTGCTTATCGAGACCCTCCCGGCTGTCTTCCAGATGAATGAGATACTCTATGAACTACGTGATCACTCAGTCGGTTTAAACTGTGGAAGAT Boechera_holboellii_clone1 CGGAGCTAAAGTCTTTATGGCTGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATGAAAGGGCATGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCACGACAAGTCAAGGAACAGAGTTTACAAGCTCAACGATCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAGCCCGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAACAGTGTGTTCGAGCGAGCTGAGAAGATGGCTGGAATAGAAAGAGGAAGCATTAGAGCGACAGTACTGATCGAGACCCTGCCCGCTGTTTTCCAGATGAATGAGATACTATATGAACTGCGTGATCACTCAGTTGGTTTAAACTGTGGAAGGT Brassica_napus TGGAGCTAAAGTCTTCATGGCAGATTTTGAGGATGCATTGTCTCCGAGCTGGGAGAATCTGATGAGAGGGCAAGTGAACTTGAAAGATGCTGTTGATGGATCCATTACGTTTAACGACAAGGCAAGGAACAAAGTTTACAAGCTCAACGACCAAGTTGCTAAGCTTTTTGTCAGGCCACGAGGCTGGCATCTCCCTGAGGCTCACATCCTCATCGACGGTGAGCCAGCCACCGGATGTCTCGTCGACTTCGGTCTTTACTTCTTCCACAACTACGCCAAGTTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACACTCTAGAGAAGCAAAGATATGGAACAGTGTGTTTGAGCGAGCTGAGAAGATGGCTGGTATAGAGCGAGGAAGCATTAGAGCCACTGTGCTGATCGAGACCCTCCCAGCTGTTTTCCAGATGAATGAGATACTATATGAACTAAGGGATCATTCGGTGGGTCTAAACTGTGGAAGAT Capsella_bursapastoris_clone1 CGGAGCTAAAGTCTTCATGGCTGATTTCGAAGACGCATTGTCTCCTGGTTGGGAGAATCTGATGAGAGGGCATGTGAACTTGAAAGATGCAGTTGATGGATCCATTACGTTCCACGACAAGTCAAGGAACAGAGTTTACAAGCTTAACGACCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGATGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGTTTTGGACCCTTCTTCTATCTTCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAACAGCGTGTTCGAACGAGCTGAGAAGATGGCTGGAATAGAGAGAGGAAGCATTAGAGCAACAGTGCTGATCGAGACCCTCCCTGCTGTTTTCCAGATGAATGAGATACTATATGAACTGCGTGATCACTCGGTTGGTTTAAACTGTGGAAGGT Capsella_bursapastoris_clone2 CGGAGCTAAAGTCTTCATGGCTGATTTTGAAGACGCATTGTCTCCTGGTTGGGAGAATCTGATGAGAGGGCATGTGAACTTGAAAGATGCAGTTGATGGATCCATTACGTTCCACGACAAGTCAAGGAACAGAGTTTACAAGCTTAACGACCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGATGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGTTTTGGACCCTTCTTCTATCTTCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAACAGCGTGTTCGAACGAGCTGAGAAGATGGCTGGAATAGAGAGAGGCAGCATTAGAGCAACAGTGCTGATCGAGACCCTCCCTGCTGTTTTCCAGATGAACGAGATACTATATGAACTGCGTGATCACTCGGTTGGTTTAAACTGTGGAAGGT Crucihimalaya_mollissima_clone1 CGGAGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATGAAAGGGCATGTGAACTTGAAAGATGCAGTGGATGGATCCATAACGTTCCATGACAAGTCAAGGAATAGAGTTTACAAGCTCAACGATCAAACCGCTAAGCTCTTTGTTCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACACTCTAGGGAAGCAAAGATATGGAACAGTGTGTTCGAGCGAGCTGAGAAGATGGCTGGAATAGAGAGAGGAAGCATTAGAGCAACAGTACTGATCGAGACCCTCCCCGCTGTTTTCCAGATGAATGAGATACTATATGAACTGCGTGATCACTCTGTTGGTTTGAACTGTGGAAGGT Lepidium_apelatum_clone1 CGGAGCTAAAGTCTTCATGGCTGATTGTGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATGAGAGGGCAACTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTTCATGACAAGTCAAGGAACAGAATTTACAAGCTCAACGACCAAACTGCTAAGCTCTTTGTCAGGCCACGAGGTTGGCATCTCCCAGAGGCTCACATCCTGATAGATGGTGAACCAGCAACTGGGTGTCTCGTCGACTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAAACTCAAGGTTCTGGTTACGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAACAGTGTGTTCGAACGAGCTGAGAAGTTGGCTGGGATAGAGAGAGGAAGCATTAGAGCGACGGTACTGATTGAGACCCTCCCTGCTGTTTTCCAGATGAATGAGATACTATACGAACTCCGTGATCACTCAGTTGGTTTAAACTGTGGAAGAT Olimarabidopsis_cabulica_clone2 TGGAGCTAAAGTCTTCATGGCGGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATGAAAGGGCATGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCATGATAAGTCAAGGAACAGAGTTTACAAGCTTAACGACCAAGTCGCTAAGCTCTTTGTCCGGCCTAGAGGTTGGCATCTCCCAGAGGCTCACATCCTCATCGATGGTGAACCCGCCACTGGATGTCTCGTCGACTTTGGCCTTTACTTCTTTCACAACTATGCCAAATTTAGACAGACTCAAGGTTCCGGTTTTGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAACAGTGTGTTCGAGCGAGCTGAGAAGATGGCTGGGATAGAGAGAGGAAGCATTAGAGCAACTGTGCTAATCGAGACCCTACCGGCTGTTTTCCAGATGAATGAGATCTTATATGAACTGCGTGATCACTCAGTCGGTTTAAACTGTGGAAGAT Olimarabidopsis_cabulica_clone3 TGGAGCTAAAGTCTTCATGGCGGATTTCGAGGACGCATTGTCTCCAAGTTGGGAGAATCTGATGAAAGGGCATGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCACGATAAGTCAAGGAACAAGGTTTACAAGCTTAACGACCAAATCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCAGAGGCTCACATCCTCATCGATGGTGAACCCGCCACTGGATGTCTCGTCGACTTTGGCCTTTACTTCTTTCACAACTATGCCAAATTTAGACAGACTCAAGGTTCCGGTTTTGGACCCTTCTTCTATCTTCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAACGGTGTCTTCGAGCGAGCTGAGAAGATGGCTGGGATAGAGAGAGGAAGCATTAGAGCAACTGTGCTAATCGAGACCCTACCAGCTGTTTTCCAGATGAATGAGATCTTATATGAACTTCGTGATCACTCAGTCGGTTTAAACTGTGGAAGAT P_toxophylla_clone1 CGGAGCTAAAGTCTTTATGGCTGATTTTGAGGACGCATTGTCTCCGAGCTGGGAGAATCTGATGAAAGGGCAAGTGAACTTGAAAAATGCAGTGGATGGGTCCATTACCTTTCACGACAAGTCAAGGAACAGAGTTTACAAGCTCAACGACCAAACCGCTAAGCTATTTGTCCGGCCACGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACCGGATGTCTCGTCGACTTCGGTCTTTACTTCTTCCACAACTACGCAAAATTTAGGCAGACTCAAGGTTCCGGTTTTGGACCTTTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAACAGTGTGTTCGAGCGAGCTGAGAAGATGGCTGGAATAGAGAGAGGAAGCATTCGGGCCACAGTGTTGATCGAAACCCTCCCAGCTGTTTTCCAGATGAATGAGATATTATACGAACTGCGTGATCATTCGGTTGGTTTAAACTGTGGAAGAT Pachycladon_enysii_1_1_A CGGAGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATGAAAGGGCATGTTAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCACGACAAGTCAAGGACTAGAGTTTACAAGCTCAACGATCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pachycladon_enysii_1_1_B CGGAGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCAAGCTGGGAGAATCTGATGAAAGGGCAAGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCATGACAAGTCAAGGAACAGAGTTTACAAGCTCAATGACCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATTGACGGTGAACCCGCCACTGGATGTCTCGTCGACTTTGGCCTTTACTTCTTCCACAACTACGCAAAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pachycladon_exilis_A CGGGGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATGAAAGGGCATGTTAACTTGAAAGATGCAGTGGATCGATCCATTACGTTCCACGACAAGTCAAGGACTAGAGTTTACAAGCTCAACGATCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCAGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pachycladon_exilis_B -------------------GCTGATTTCGAGGACGCATTGTCTCCAAGCTGGGAGAATCTGATGAAAGGGCAAGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCACGACAAGTCAAGGAACAGAGTTTACAAGCTCAATGACCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATTGACGGTGAACCCGCCACTGGATGTCTCGTCGACTTTGGCCTTTACTTCTTCCACAACTACGCAAAATTTAGACAGACACAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pachycladon_fastigiata_4_1_A CGGAGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATGAAAGGGCATGTTAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCACGACAAGTCAAGGACTAGAGTTTACAAGCTCAACGATCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pachycladon_fastigiata_4_1_B CGGAGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCAAGCTGGGAGAATCTGATGAAAGGGCAAGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCATGACAAGTCAAGGAACAGAGTTTACAAGCCCAATGACCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATTGACGGTGAACCCGCCACTGGATGTCTCGTCGACTTTGGCCTTTACTTCTTCCACAACTACGCAAAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pachycladon_latisiliqua_1_5_A CGGAGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATGAAAGGGCATGTTAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCACGACAAGTCAAGGACTAGAGTTTACAAGCTCAACGATCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pachycladon_latisiliqua_1_5_B CGGAGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCAAGCTGGGAGAATCTGATGAAAGGGCAAGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCATGACAAGTCAAGGAACAGAGTTTACAAGCTCAATGACCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATTGACGGTGAACCCGCCACTGGATGTCTCGTCGACTTTGGCCTTTACTTCTTCCACAACAACGCAAAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pachycladon_wallii_1_1_A CGGAGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATGAAAGGGCATGTTAACTTGAAAGATGCAGTGGACGGATCCATTACGTTCCACGACAAGTCAAGGACTAGAGTTTACAAGCTCAACGATCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pachycladon_wallii_1_1_B CGGAGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCAAGCTGGGAGAATCTGATGAAAGGGCAAGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCATGACAAGTCAAGGAACAGAGTTTACAAGCTCAATGACCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATTGACGGTGAACCCGCCACTGGATGTCTCGTCGACTTTGGCCTTTACTTCTTCCACAACTACGCAGAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transberingia_bursifolia_clone3 CGGAGCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCACCGAGTTGGGAGAATCTGATGAAAGGGCATGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCACGACAAGTCAAGGAATAGAGTTTACAAGCTCAACGATCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGTTGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTCGATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGTTTCGGACCCTTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAACAGTGTGTTCGAGCGAGCTGAGAAGATGGCTGGAATAGAGAGAGGAAGCATTAGAGCGACAGTACTGATCGAGACCCTCCCCGCTGTTTTCCAGATGAATGAGATACTATATGAACTGCGTGATCACTCGGTTGGTTTGAACTGTGGAAGGT ; END;