#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 22, 2024; 8:52 GMT

TreeBASE (cc) 1994-2008

Study reference:
Heenan P., Joly S., & Lockhart P. 2009. A Pleistocene inter-tribal allopolyploidization
event precedes the species radiation of Pachycladon (Brassicaceae) in New
Zealand. Molecular Phylogenetics and Evolution, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S2250]

BEGIN TAXA;
        TITLE  CAD5;
        DIMENSIONS NTAX=14;
        TAXLABELS
            Arabidopsis_lyrata_lyrata
            Arabidopsis_thaliana
            Boechera_holboellii
            Brassica_rapa_pekinensis
            Capsella_bursapastoris_clone1
            Crucihimalaya_mollissima
            Lepidium_apelatum_clone3
            Lepidium_apelatum_clone4
            Olimarabidopsis_cabulica
            Pachycladon_exilis_A
            Pachycladon_exilis_B
            Pachycladon_fastigiata_A
            Pachycladon_fastigiata_B
            Transberingia_bursifolia_bursifolia
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3402]

	TITLE CAD5;
	LINK TAXA = CAD5;
	DIMENSIONS NCHAR=376;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                               10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370      ]
[                                                .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
Arabidopsis_lyrata_lyrata               AAAAATGATCTTGGCATGTCTAACTACCCCATGGTTCCTGGGCATGAAGTGGTAGGGG-AAGTGGTGGAGGTTGGATCAGATGTGAGCAAGTTCACCGTAGGTGACATAGTTGGAGTTGGTTGCCTCGTTGGATGTTGCGGAGGTTGTAGCCCTTGCGAGAGAGATCTGGAACAGTATTGTCCCAAGAAGATTTGGAGCTACAACGATGTTTACATCGATGGTCAACCTACACAAGGCGGCTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGGCGGCTGAGCAGGCTGCGCCACTACTGTGCGCTGGTGTGACGGTGTATAGTCCACTGAGCCACTTCGGTCTGAAACAA
Arabidopsis_thaliana                    AAAAATGATCTTGGCATGTCTAATTACCCCATGGTTCCTGGGCATGAAGTGGTAGGGG-AAGTAGTGGAGGTGGGATCAGATGTGAGCAAGTTCACCGTAGGGGACATAGTTGGAGTTGGTTGCCTCGTTGGATGTTGCGGAGGTTGTAGCCCCTGCGAGAGAGATCTGGAACAGTATTGTCCAAAGAAGATTTGGAGCTACAATGATGTTTACATCAATGGTCAACCTACACAAGGCGGCTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTCAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCTGCGCCGCTACTGTGCGCTGGTGTGACTGTGTACAGTCCACTGAGCCACTTTGGTCTGAAACAA
Boechera_holboellii                     AAAAATGATCTGGGCATGTCTAACTACCCCATGGTTCCTGGGCATGAAGTGGTAGGGG-AAGTGATGGAGGTGGGATCAGGTGTGAGCAAGTTCACCGTAGGGGACATAGTCGGAGTTGGTTGCCTCGTTGGATGTTGTGGAGGTTGTAGCCCCTGTGAGAGAGATCTGGAACAGTATTGTCCCAAGAAGATTTGGAGCTACAATGATGTTTACTTCGATGGTCAACCCACACAAGGCGGCTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCTGCGCCGCTACTGTGCGCAGGTGTGACGGTGTACAGTCCACTGAGCCACTTCGGTCTGAAACGA
Brassica_rapa_pekinensis                AAAAACGATCTCGGCACGTCTAACTACCCCATGGTTCCTGGGCACGAGGTTGTAGGGG-AAGTAGTAGAGGTGGGATCAGGTGTGAGTAAGTTCACCGTAGGGGATATAGTTGGAGTTGGTTGTCTCGTTGGATGTTGCGGTGGTTGTAGCCCCTGCGAGAGGGATCTCGAACAGTATTGTCCCAAGAAAATATGGAGTTACAACGATGTTTACATCGATGGTCAGCCTACACAAGGTGGCTTTGCTAAAGCCACTGTGGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCAGCCCCGCTACTGTGCGCCGGTGTGACGGTGTACAGTCCACTGAGCCACTTTGGGCTGAAGAAA
Capsella_bursapastoris_clone1           AAAAATGATCTTGGCATGTCTAACTACCCTATGGTTCCTGGGCATGAAGTGGTAGGGG-AAGTGGAGGAGGTGGGATCAGGTGTGAGCAAGTTCACCGTAGGGGATATAGTCGGAGTTGGTTGCCTCGTTGGGTGTTGTGGAGGCTGTAGCCCCTGTGAGAGAGATCTGGAACAGTACTGTCCCAAGAAGATTTGGAGCTACAATGATGTTTACATCGATGGTCAACCCACCCAAGGCGGCTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTCGTGAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCTGCGCCGCTGCTGTGCGCTGGTGTGACGGTGTACAGTCCACTGAGCCACTTCGGTCTGAAACGA
Crucihimalaya_mollissima                --AAATGATCTGGGCATGTCTAACTACCCCATGGTTCCTGGGCATGAAGTGGTAGGAG-AAGTGGTGGAGGTGGGATCAGGTGTGAGCAAGTTCACCGTAGGGGATATAGTCGGAGTTGGTTGTCTCGTTGGATGTTGTGGAGGTTGTAGCCCATGTGAGAGAGATCTGGAACAGTATTGTCCCAAGAAGATTTGGAGCTACAATGATGTTTACATCGATGGTCAACCCACACAAGGCGGCTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCTGCGCCGCTACTGTGCGCTGGTGTGACGGTGTACAGTCCAC-----------------------
Lepidium_apelatum_clone3                AAAAATGATATGGGGATGTCTAATTACCCCATGGTTCCTGGGCACGAGGTTGTAGGAG-AAGTGGTGGAGGTTGGATCAGGTGTGCGCAAGTTCACAGTAGGGGATATAGTAGGAGTTGGATGTCTCGTTGGATGTTGTGGAGGTTGTAGCCCTTGTGAGAGAGATTTGGAACAGTATTGTCCCAAGAAGATTTGGAGCTACAACGATGTTTACTTCGATGGTCAGCCTACTCAAGGTGGCTTCGCTAAAGCCACCGTCGTCCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGGCGGTTGAGCAAGCTGCACCGCTACTATGCGCTGGTGTGACGGTGTACAGTCCACTGAGTCACTTCGGGCTAAAGCAA
Lepidium_apelatum_clone4                AAAAACGACTTGGGCATGTCTAACTACCCCATGGTTCCTGGGCACGAGGTTGTAGGAG-AAGTGGTGGAGGTTGGATCAGGTGTGAGCAAGTTCATGGTAGGAGACACAGTTGGAGTTGGATGTTTGGTTGGATGTTGTGGAGGTTGTAGTCCTTGTGAGAGAGATCTGGAACAGTATTGTCCTAAGAAGATTTGGAGCTACAACGATGTTTACTTTGATGGTCAACCAACACAAGGTGGCTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGCCGGTTGAGCAAGCTGCACCGTTACTATGTGCCGGTGTGACGGTTTACAGTCCATTGAGTCACTTTGGGCTAAAGGAA
Olimarabidopsis_cabulica                AAAAATGACCTCGGCATGTCTAATTACCCTATGGTTCCTGGGCACGAAGTTGTAGGAG-AAGTGGAGGAGGTGGGATCAGATGTGAGCAAGTTCACAGTAGGGGACATAGTTGGAGTTGGTTGCCTCGTTGGATGTTGTGGAGGTTGTAGCCCCTGCGATAGAGATCTTGAACAGTATTGCCCTAAGAAGATTTGGAGCTACAACGATGTTTACATCGATGGTCAACCTACACAAGGCGGCTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCTGCGCCGCTACTGTGCGCTGGTGTGACGGTATACAGTCCACTGAGCCACTTCGGTCTGAAACGA
Pachycladon_exilis_A                    AAAAATGATCTGGGCATGTCTAACTACCCCATGGTTCCTGGGCATGAAGTGGTAGGGG-AAGTGGTGGAGGTGGGATCAGGTGTGAGCAAGTTCACCGTAGGGGATATAGTCGGAGTTGGTTGCCTCGTTGGATGTTGTGGAGGTTGTAGCCCCTGTGAGAGAGATCTGGAACAGTATTGTCCCAAGAAGATTTGGAGCTACAATGATGTTTACATCGATGGTCAACCCACACAAGGCGGCTTCGCTAAAGCCACCGTCGTTCACCAAAAG---------------------------------------------------------------------------------------------------------
Pachycladon_exilis_B                    AAAAACGATATGGGCATGTCTAATTACCCCATGGTTCCTGGGCACGAGGTTGTGGGGG-AAGTGGTGGAGGTGGGATCAGGTGTGAGCAAGTTCACCGTAGGGGACATAGTCGGAGTTGGTTGCCTGGTTGGATGTTGTGGAGGTTGTAGCCCCTGCGAGAGAGATCTGGAACAGTATTGTCCCAAGAAGATCTGGAGCTACAACGATGTTTACACTGATGGTCAACCCACACAAGGCGGCTTCGCTAAAGCCACGGTCGTTCACCAAAAGTTTGTGTTGAAGATTCCAAAAGGAATGGCGGTTGAGCAGGCTGCGCCGCTACTGTGTGCTGGTGTGACGGTGTACAGTCCACTGAGCCACTTCGGTCTGAAACGA
Pachycladon_fastigiata_A                --AAATGATCTGGGCATGTCTAACTACCCCATGGTTCCTGGGCATGAAGTGGTAGGGG-AAGTGGTGGAGGTGGGATCAGGTGTGAGCAAGTTCACCGTAGGGGATATAGTCGGAGTTGGTTGCCTCGTTGGATGTTGTGGAGGTTGTAGCCCCTGTGAGAGAGATCTGGAACAGTATTGTCCCAAGAAAATTTGGAGCTACAATGATGTTTACATCGATGGTCAACCCACACAAGGCGGCTTCGCTAAAGCCACCGTCGTTCACCAAAA----------------------------------------------------------------------------------------------------------
Pachycladon_fastigiata_B                AAAAACGATCTGGGCATGTCTAATTACCCCATGGTTCCTGGGCACGAGGTTGTGGGGG-AAGTGGTGGAGGTGGGATCAGGTGTGAGCAAGTTCACCGTAGGGGACATAGTCGGAGTTGGTTGCCTGGTTGGATGTTGTGGAGGTTGTAGCCCCTGCGAGAGAGATCTGGAACAGTATTGTCCCAAGAAGATCTGGAGCTACAACGATGTTTACACTGATGGTCAACCCACACAAGGCGCCTTCGCTAAAGCCACGGTCGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCTGCGCCGCTACTGTGTGCTGGTGTGACGGTGTACAGTCCACTGAGCCACTTCGGTCTGAAACGA
Transberingia_bursifolia_bursifolia     AAAAATGATCTGGGCATGTCTAACTACCCCATGGTTCCTGGGCATGAAGTGGTAGGAG-AAGTGGTGGAGGTGGGATCAGGTGTGAGCAAGTTCACCGTAGGGGATATAGTCGGAGTTGGTTGTCTCGTTGGATGTTGTGGAGGTTGTAGCCCATGTGAGAGAGATCTGGAACAGTATTGTCCCAAGAAGATTTGGAGCTACAATGATGTTTACATCGATGGTCAACCCACACAAGGCGGCTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCTGCGCCGCTACTGTGCGCTGGTGTGACGGTGTACAGTCCACTGAGCCACTTCGGTTTGAAACGA
;
END;