#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 23, 2024; 5:16 GMT

TreeBASE (cc) 1994-2008

Study reference:
Heenan P., Joly S., & Lockhart P. 2009. A Pleistocene inter-tribal allopolyploidization
event precedes the species radiation of Pachycladon (Brassicaceae) in New
Zealand. Molecular Phylogenetics and Evolution, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S2250]

BEGIN TAXA;
        TITLE  MtN21;
        DIMENSIONS NTAX=13;
        TAXLABELS
            Arabidopsis_lyrata_clone1
            Arabidopsis_thaliana
            Boechera_holboellii_clone1
            Crucihimalaya_mollissima_clone1
            Crucihimalaya_mollissima_clone3
            Lepidium_apelatum
            Olimarabidopsis_cabulica_clone1
            Pachycladon_exilis_1_1_A
            Pachycladon_fastigiata_clone2
            Pachycladon_fastigiata_clone5
            Physaria_fendleri_clone1
            Thellungiella_spp_clone1
            Transberingia_bursifolia_bursifolia_clone1
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3404]

	TITLE MtN21;
	LINK TAXA = MtN21;
	DIMENSIONS NCHAR=572;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                      10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570     ]
[                                                       .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .     ]
Arabidopsis_lyrata_clone1                      CAACGCTTTTGCCACAGCCGCTATCGCACCCTTCGCTCTTCTCTCCGAAAGGAAAGTGAGATCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGGCCTGTGATTGATCAGAACTTATACTACATCGGTCTGAAACTCACATCACCGACGTTTTCCACCGCCGTTAGCAACATCGTGCCTGCACTTACCATTATCCTTGCCACACTTTTCAGGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTAGTAAAAGTGATGGGGACTTTAGTGACAGTGGTTGGATCCATATTGATGATATTATACAAAGGTCCTTTCATTAATTTCTTCCGATCTCACCTC------ACCCCCGCCTCCTCGCCGCCGACGGCTGACTATCTTAAGGCTGCCGTCTTCCTTCTCCTTGCTTCCCTCTCATGGGCTTCGTTCTTTGTTCTTCAGGCTGCGACTTTAAAGAAATACTCAGCCCATCTCTCGTTGTCAACAATGGTGTGTTTCATGGGAACGTTACAGTCTTTAGCCCTAGCCTTCGTAATG-------------
Arabidopsis_thaliana                           CAACGCTTTTGCCACAGCCGCTATCGCACCCTTCGCTCTTCTCTCCGAAAGGAAAGTGAGATCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGGCCGGTGATTGATCAGAACTTATACTATATCGGTCTAAAACTCACATCACCAACGTTTTCCTCCGCCGTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACACTTTTCAGGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTGGTAAAAGTGATGGGGACGTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGTCCTTTCATTAATTTCTTCCGGTCTCACCTC------ACGGCCGCCTCTTCGCCGCCGACGGCTGACTATCTTAAGGCTGCCGTCTTCCTACTCCTCGCTTCCCTCTCATGGGCGTCGTTCTTTGTTCTTCAGGCTGCGACTTTGAAGAAATACTCAGCCCATCTCTCAATGTCAACAATGGTGTGTTTCATGGGAACGTTACAGTCTTTAGCCCTAGCCTTCGTAATGGAACACAATCCTT
Boechera_holboellii_clone1                     CAACGCTTTTGCCACAGCCGCTATCGTACCCTTTGCTCTTCTCTCCGAAAGGAAAGTGAGGTCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGGCCTGTGATTGATCAGAACTTATATTATATCAGTCTGAAACTCACATCACCGACGTTTTCCTCCGCCGTTAGCAACATCGTACCTGCAATTACCATTATCCTTGCCACTCTCTTCAGAATGGAGAAAGTGGAGGTGAGGAAAGTAAGATGCCTGGTAAAAGTGATGGGTACTTTAGTGACAGTGGTTGGATCCATTTTGATGATATTCTACAAAGGTCCTTTCATCAATATCTTCCGATCTCACCTC------ACCACCGTCTCTTCACCGCCGACGACTGACTATATTAAGGCCGCCGTCTTCCTACTACTCGCTTCCCTCGCATGGGCTTCGTTCTTCGTTCTTCAGGCTGCGACTTTGAAGCAATACTCAGCCCATCTCTCGTTATCAACAATGGTGTGTTTCATGGGAACGTTACAGTCTTTAGCCCTGACCTTTGTAATGGAACACAATCCTT
Crucihimalaya_mollissima_clone1                CAATGCTTTTGCCACAGCCGCTATCGCCCCCTTTGCTCTTCTCTCCGAAAGGAAAGTGAGGTCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGGCCTGTGATTGATCAGAACTTATATTATATCAGTCTGAAACTCACATCACCGACGTTTTCCTCCGCCGTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACTCTCTTCAGAATGGAGAAAGTGGAGATGAGGAAAGTAAGATGCCTAGTAAAAGTGATGGGTACTTTAGTGACAGTAATTGGATCCATATTGATGATATTCTACAAAGGTCCTTTCATCAATATCTTCCGATCTCACCTC------ACCACCATCTCTTCCCCGCCGGCGACTGACTATCTTAAAGCCGCCGTCTTCCTACTACTCGCTTCCCTCTCATGGGCTTCGTTCTTCGTTCTTCAGGCTGCGACTTTGAAGAAATACTCAGCCCATCTCTCGTTATCAACAATGGTGTGTTTCATGGGAACGTTACAGTCTTTAGCCCTGATTTTCGTAATGGAACACAATCCTT
Crucihimalaya_mollissima_clone3                CAACGCTTTTGCCACAGCCGCTATTGCACCCTTTGCTCTTCTCTCCGAAAGGAAAGTGAGGTCAAAGATAACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGGCCCGTGATTGATCAGAACTTATATTACATCAGTCTGAAACTCACATCACCGACGTTTTCCACCGCCGTTAGCAACATCGTGCCTACAATTACCTTTATCCTTGCCACTCTCTTCAGAATGGAGAAAGTGGAGATGAGGAAAGTAAGATGCCTAGTAAAAGTGATGGGTACGTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGTCCTTTCATCAATATTTTCCGATCTCAACTC------ACCACCGTCTCTTCGCCGCCGACGACTGACTATCTTAAGGCCGCCGTCTTCCTACTAATCTCTTCCCTCTCATGGGCTTCGTTCTTCGTTCTTCAGGCTGCGACTTTGAAGAAATACTCAGCCCATCTCTCGTTATCAACAATGGTGTGTTTCATGGGAACGTTACAGTCTTTAGCCCTGACCTTCGTAATG{GT}AACACAATCCTT
Lepidium_apelatum                              TAACGCTTTTGCCACAGCCGCAATCGCACCCTTCGCTCTTCTTTCTGAAAGGAAGGTGAGATCAAAGATTACGTTTCCAATATTCATGAGAATATTTCTTCTTGCTCTTCTCGGGCCTGTGATTGATCAGAACTTATACTACATCGGTCTGAAACTCACATCGCCGACGTTTGCCTCCGCCGTAAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACTCTTTTCAGGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCTTAGTAAAAGTGATGGGGACTTTAGTGATAGTAGTTGGATCCATTTTGATGATATTCTTCAAAGGTCCTTTCATCAATATCTTCCGATCTCAACTA------ACCATCGCCGCTTCGCCGTCCACGGCAGATTATCTTAAGGCCGCCGTCTTCCTCCTCCTCGCTTCCCTCTCTTGGACCTCCTTCTTCATCCTTAAGGCGGCGACTTTGAAGAAATACTCAGCACATCTTTCGCTATCAACAATGGTTTGTTTCATCGGAACATTACAATCTTTAGCTCTAACCTTCGTAATGGAACACAATCCTT
Olimarabidopsis_cabulica_clone1                CAACGCTTTTGCCACAGCCGCTATCGCACCCTTCGCTCTTCTCTCTGAAAGGAAAGTGAGATCAAAGATGACGTTTCCAATATTTATGCGGATATTTCTTCTTGCTCTTCTCGGGCCTGTGATTGATCAGAACTTGTATTACATCGGTCTGAAACTCACGTCACCGACGTTTTCTTCGGCCGTTAGCAACACCGTGCCTGCAATTACCATTATCCTTGCCACTCTTTTCAGAATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTAGTAAAAGTGATGGGTACTTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGTCCTTTCATCAATTTCTTCCGATCTAACCTC------ACCACCGTCTCTTCGCCGCCGACAGCTGACTATCTTAAGGCCGCTGTCTTCCTACTCATCGCTTCCCTCTCATGGGCTTCGTTCTTCGTTCTTCAGGCTGCAACTTTGAAGAGATACTCAGCCCATCTCTCGTTATCAACAATGGTGTGTTTTATGGGAACGTTACAGTCTTTAGCCTTGACCTTCGTAATGGAACACAATACTT
Pachycladon_exilis_1_1_A                       --------------------------------------------------------------------TGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGGCCTGTGATTGATCAGAACTTATATTATATCAGTCTGAAACTCACATCACCGACGTTTTCCTCCGCCGTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACTCTCTTCAGAATGGAGAAAGTGGAGATGAGGAAAGTAAGATGCTTAGTAAAAGTGATGGGTACTTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGCCCTTTCATCAATATCTTCCGATCGCACCTC------ACCACAGTCTCTTCGCCGCCGACGACTGACTATCTTAAGGCCGCCGTCTTCCTACTACTCGCTTCCCTCTCATGGGCTTCGTTCTTCGTTCTTCAGGCTGCGACTTTGAAGAAATACTCAGCCCATCTCTCGTTATCAACAATGGTGTGTTTCATGGGAACGTTACAGTCTTTAG------------------------------
Pachycladon_fastigiata_clone2                  CAACGCTTTTGCCACAGCCGCTCTCGCACCCTTCGCTCTTCTCTCTGAAAGGAAAGTAAGGTCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTCCTCGGGCCTGTGATTGATCAGAACTTATATTACATCGGTCTGAAACTCACATCACCGACGTTTTCCTCCGCTGTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACTCTTTTCAGGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTAGTAAAAGTGATGGGGACTTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGTCCTTTCATCAATTTCTTCCGATCTCACCTC------ACCACCGCCTCTTTGCCGCCGACGGCTGACTATCTTAAGGCCGCCGTCTTCCTACTCCTCGCTTCCCTTTCATGGGCTTCGTTCTTCGTTCTGCAGGCTGCGACTTTGAAGAAATACTCAGCCCATCTCTCGTTATCAACAATGGTGTGTTTCATGGGAACGTTACAGTCTTTAGCCCTCACCTTCGTAATGGAACACAATCCTT
Pachycladon_fastigiata_clone5                  CAACGCTTTTGCCACAGCCGCTATCGCACCCTTTGCTCTTCTCTCCAAAGGGAAAGTGAGGTCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGGCCTGTGATTGATCAGAACTTATATTATATCAGTCTGAAACTCACATCACCGACGTTTTCCTCCGCCGTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACTCTCTTCAGAATGGAGAAAGTGGAGATGAGGCAAGTAAGATGCCTAGTAAAAGTGATGGGTACTTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGCCCTTTCATCAATATCTTCCGATCTCACCTC------ACCACCGTCTCTTCGCCGCCGACGACTGACTATCTTAAGGCCGCCGTCTTCCTACTACTTGCTTCCCTCTCATGGGCTTCGTTCTTCGTTCTTCAGGCTGCGACTTTGAAGAAATACTCAGCCCATCTCTCGTTATCAACAATGGTGTGTTTCATGGGAACGTTACAGTCTTTAGCCCTGACCTTGGTAATGGAACACAATCCTT
Physaria_fendleri_clone1                       CAACGCTTTTGCCACAGTAGCTCTCGCACCCTTCGCTCTTTTGTCTGAAAGGAAAGTGAGATCAAAAATGACCTTTCCAATATTCATGAGGATATTTCTTCTTGCTCTTCTCGGGCCTGTGATTGATCAGAACTTATATTACATCGGTCTGAAACTCACATCACCAACGTTTTCCACCGCCGTTAGTAACATCGTACCTGTAATTTCCATTATCCTCGCCACTCTTTTCAGAATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCTAGTAAAAGTGATTGGGACTTTAGTGACAGTAGTTGGATCCGTATTGGTGATATTCTACAAAGGTCCTTTTATCAATGGCTTCCGATCTAATCTC------ACCACCGTTTCTTCGCCGCTGACGGCTGATTATATCAAGGCCGCCGTCTTCCTACTCCTTGCTTCCCTCTCATGGGCTTCCTTCTTCATTCTTCAGGCCTCGACATTAAAGAAATACTCAGCTCATCTCTCGTTATCAACAATGGTCTGTTTCTTGGGAACGTTACAATCTCTAGCTCTGACATTCGTAATGGAACACAATCCTT
Thellungiella_spp_clone1                       CAACGCTTTTGCCACAGCCGCTATCGCACCTTTAGCATTTCTCTCCGAAAGGAAAGTGAGGTCAAAGATTACGTTTCCAATATTCATGCACATATTTGTTCTTGCTCTTCTCGGGCCTGTGATAGATCAGAACTTATATTACGTCGGTCTGAAACTCACATCTCCTACGTTTTCCTCCGCCGTCAGCAACATCGTCCCCGCAATTACCTTTATTCTCGCCACTCTTTTCAGGATGGAGAAAGTGGAGATGAGAAAAGTAAGATGCCAAGTAAAAGTGGTGGGGACTATAGTGACAGTGGTTGGATCCATTTTGATGATATTCTTCAAAGGTCCTTTCATCAATTCCTTCCAATCTCACCTCGCCACCACCACCGCCTCTTCGCCGCTGGCCGGTGATTATCTTAAAGCCACCGTCTTCCTCCTCCTCGCCTCCCTCTCATGGGCTTCGTTCTTCGTTCTTCAGGCATCGACTCTGAAGAAATACTCAGCCCATCTCTCGTTATCAAGCATGGTGTGTTTCATGGGAACGTTACAATCCTTAGCCCTGACCTTCGTAATGGAGCACAATCCTT
Transberingia_bursifolia_bursifolia_clone1     CAATGCTTTTGCCACAGCCGCTATCGCCCCCTTTGCTCTTCTCTCCGAAAGGAAAGTGAGGTCAAAGATGACGTTTCCAATATTCATGCGAATATTTCTTCTTGCTCTTCTCGGGCCTGTGATTGATCAGAACTTATATTATATCAGTCTGAAACTCACATCACCGACGTTTTCCTCCGCCGTTAGCAACATCGTGCCTGCAATTACCATTATCCTTGCCACTCTCTTCAGAATGGAGAAAGTGGAGATGAGGAAAGTAAGATGCCTAGTAAAAGTGATGGGTACTTTAGTGACAGTGGTTGGATCCATATTGATGATATTCTACAAAGGTCCTTTCATCAATATCTTCCGATCTCACCTC------ACCACCATCTCTTCCCCGCCGGCGACTGACTATCTTAAAGCCGCCGTCTTCCTACTACTCGCTTCCCTCTCATGGGCTTCGTTCTTCGTTCTTCAGGCTGCGACTTTGAAGAAATACTCAGCCCATCTCTCGTTATCAACAATGGTGTGTTTCATGGGAACGTTACAGTCTTTAGCCCTGATTTTCGTAATGGAACACAATCCTT
;
END;