TreeBASE Search-Matrix 34561 of study 16436

@ARTICLE{TreeBASE2Ref23709, author = {Ryan S Schwarz and Gary R. Bauchan and Charles A. Murphy and Jorgen Ravoet and Dirk C. de Graaf and Jay D. Evans}, title = {Characterization of Two Species of Trypanosomatidae from the Honey Bee Apis mellifera: Crithidia mellificae Langridge and McGhee, 1967 and Lotmaria passim n. gen., n. sp.}, year = {2015}, keywords = {Apidae; flagellate; Kinetoplastea; Leptomonas; protists; systematics; taxonomy; ultrastructure}, doi = {10.1111/jeu.12209-4607}, url = {http://}, pmid = {}, journal = {Journal of Eukaryotic Microbiology}, volume = {}, number = {}, pages = {}, abstract = {Trypanosomatids are increasingly recognized as prevalent in European honey bees (Apis mellifera) and by default are attributed to one recognized species, Crithidia mellificae Langridge and McGhee, 1967. We provide reference genetic and ultrastructural data for type isolates of C. mellificae (ATCC 30254 and 30862) in comparison with two recent isolates from A. mellifera (BRL and SF). Phylogenetics unambiguously identify strains BRL/SF as a novel taxonomic unit distinct from C. mellificae strains 30254/30862 and assign all four strains as lineages of a novel clade within the subfamily Leishmaniinae. In vivo analyses show strains BRL/SF preferably colonize the hindgut, lining the lumen as adherent spheroids in a manner identical to previous descriptions from C. mellificae. Microscopy images show motile forms of C. mellificae are distinct from strains BRL/SF. We propose the binomial Lotmaria passim n. gen., n. sp. for this previously undescribed taxon. Analyses of new and previously accessioned genetic data show C. mellificae is still extant in bee populations, however L. passim n. gen., n. sp. is currently the predominant trypanosomatid in A. mellifera globally. Our findings require that previous reports of C. mellificae be reconsidered and that subsequent trypanosomatid species designations from Hymenoptera provide genetic support.} }

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Matrix 34561 of Study 16436

Citation title: "Characterization of Two Species of Trypanosomatidae from the Honey Bee Apis mellifera: Crithidia mellificae Langridge and McGhee, 1967 and Lotmaria passim n. gen., n. sp.".

Study name: "Characterization of Two Species of Trypanosomatidae from the Honey Bee Apis mellifera: Crithidia mellificae Langridge and McGhee, 1967 and Lotmaria passim n. gen., n. sp.".

This study is part of submission 16436 (Status: Published).

Matrices

Title: Canescentia_CaM

Rows

Taxon Label	Row Segments	Characters 1?–30
Penicillium antarticum CBS100492T Canescentia CaM KP016826 xx	(none)	AAGT-GATCAA-ATCCTCGGATTG-AAGT-
Penicillium antarticum CBS116939 Canescentia CaM JX157255 xx	(none)	AAGT-GATCAA-ATCCTCGGATTG-AAGT-
Penicillium antarticum CBS116938 Canescentia CaM KP016827 xx	(none)	AAGT-GATCAA-ATCCTCGGATTG-AAGT-
Penicillium atrovenetum CBS241.56T Canescentia CaM KJ867004 xx	(none)	AAGT-GATCAC-ATCCCCGGATTG-AAGT-
Penicillium atrovenetum CBS243.56 Canescentia CaM JX157411 xx	(none)	AAGT-GATCAC-ATCCCCGGATTGAAAGT-
Penicillium canescens IMI149218 Canescentia CaM KP027409 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium canescens CBS300.48T Canescentia CaM KJ867009 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium murciacum CBS161.81T Canescentia CaM KP016824 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium murciacum CBS458.69 Canescentia CaM KP016822 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium cf murciacum IBT31963 Canescentia CaM JX157369 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium cf murciacum CBS414.68 Canescentia CaM KP016821 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium radiatolobatum IBT31959 Canescentia CaM JX157354 xx	(none)	AAGT-GTTTCT-ACCCGTGGATTG-AAGT-
Penicillium radiatolobatum IBT31958 Canescentia CaM JX157359 xx	(none)	AAGT-GTTTCT-ACCCGTGGATTG-AAGT-
Penicillium radiatolobatum CBS340.79T Canescentia CaM KP016825 xx	(none)	AAGT-GTTTCT-ACCCGTGGATTG-AAGT-
Penicillium yarmokense CBS410.69T Canescentia CaM KJ867013 xx	(none)	AAGT-GTTTCC-ACGCGTGGATTG-AAGT-
Penicillium echinatum NRRL917T Canescentia CaM KJ867021 xx	(none)	AAGT-GTTTCC-CTCCGTGGATTG-AAGT-
Penicillium griseoazureum CBS162.42T Canescentia CaM KP016823 xx	(none)	AAGT-GTTTCC-CTCCGTGGATTG-AAGT-
Penicillium nigricans CBS354.48T Canescentia CaM KJ867012 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium dunedinense CBS138218T Canescentia CaM KJ775405 xx	(none)	AAGT-GTTTCT-ACCCGTGGATTG-AAGT-
Penicillium granatense CBS166.81T Canescentia CaM KJ866998 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium janczewskii CBS221.28T Canescentia CaM KJ867001 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium janczewskii CBS413.68 Canescentia CaM KJ867014 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium janczewskii CBS279.47 Canescentia CaM KJ867008 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium nigricans var sulphuratum CBS744.70T Canescentia CaM KJ867018 xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium cf canescens KAS3618 Canescentia CaM na xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium cf canescens KAS3622 Canescentia CaM na xx	(none)	AAGT-GTTTCC-ACCCGTGGATTG-AAGT-
Penicillium jensenii CBS327.59T Canescentia CaM AY443490 xx	(none)	AAGT-GTTTCCAACCCGTGGATTG-AAGT-
Penicillium jensenii CBS216.28 Canescentia CaM KJ867000 xx	(none)	AAGT-GTTTCCAACCCGTGGATTG-AAGT-
Penicillium novaezeelandiae clade1 CBS138942T Canescentia CaM JX157468 xx	(none)	AAGT-GATATC-ACCCCCGCATTG-AAGT-
Penicillium novaezeelandiae clade1 CBS138956 Canescentia CaM JX157402 xx	(none)	AAGT-GATATC-ACCCCCGCATTG-AAGT-
Penicillium novaezeelandiae clade1 CBS138955 Canescentia CaM JX157401 xx	(none)	AAGT-GATATC-ACCCCCGCATTG-AAGT-
Penicillium novaezeelandiae clade2 CBS138949T Canescentia CaM JX157353 xx	(none)	AAGT-GATATC-ACCCCCGCATTG-AAGT-
Penicillium novaezeelandiae clade2 CBS138936 Canescentia CaM JX157352 xx	(none)	AAGT-GATATC-ACCCCCGCATTG-AAGT-
Penicillium novaezeelandiae clade2 CBS138938 Canescentia CaM JX157356 xx	(none)	AAGT-GATATC-A-CCCCGCATTG-AAGT-
Penicillium novaezeelandiae CBS546.77 Canescentia CaM KP016828 xx	(none)	AAGT-GATATC-ACCCTCGCATTG-AAGT-
Penicillium novaezeelandiae CBS137.41T Canescentia CaM KJ866996 xx	(none)	AAGT-GATATC-ACCCTCGCATTG-AAGTC
Penicillium cf corraligerum KAS2101 Canescentia CaM na xx	(none)	AAGT-GACCAC-ATCCCCGGATTG-AAGG-
Penicillium cf corraligerum KAS2203 Canescentia CaM na xx	(none)	AAGT-GACCAC-ATCCCCGGATTG-AAGG-
Penicillium coralligerum CBS123.65T Canescentia CaM KJ866994 xx	(none)	AAGTGGATCCC-ATCTCCGGATTG-AAGT-
Penicillium coralligerum CBS114.69 Canescentia CaM KJ866991 xx	(none)	AAGT-GATCCC-ATCTCCGGATGG-AAGT-
Penicillium brevicompactum CBS257.29T Brevicompacta CaM_AY484813	(none)	GAGT-AACCCC-ACGTGTCAGATA------

Columns

None of the columns has a description.