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Matrix 35553 of Study 18171
Citation title: "Towards a revised generic classification of lecanoroid lichens (Lecanoraceae, Ascomycota) based on molecular, morphological and chemical evidence".
Study name: "Towards a revised generic classification of lecanoroid lichens (Lecanoraceae, Ascomycota) based on molecular, morphological and chemical evidence".
This study is part of submission 18171
(Status: Published).
Matrices
Title: Lecanoraceae ITS-mtSSU alignment
Rows
| Taxon Label | Row Segments | Characters 1?–30 |
|---|---|---|
| Adelolecia pilati | (none) | ------------------------------ |
| Arctopeltis thuleana U203 | (none) | ---------------------------ACG |
| Bryonora castanea U193 | (none) | ---------------------CT--GAGAG |
| Carbonea vitellinaria eb32321 | (none) | ------------------------------ |
| Carbonea vorticosa s123 | (none) | GAACCTGCGGAAGGATCATTAAT----GGG |
| Carbonea vorticosa Tuerk 43031 | (none) | ---------------------------GAG |
| Carbonea vorticosa Tuerk 44641 | (none) | ---------------------------GAG |
| Frutidella caesioatra | (none) | ------------------------------ |
| Japewia tornoensis | (none) | GAACCTGCGGAAGGATCATTACC--GAGAG |
| Lecanora achariana U155 | (none) | -------------------------ACGAG |
| Lecanora achroa0 | (none) | GAACCTGCGGAAGGATCATTACC--GAGTG |
| Lecanora achroa1 | (none) | GAACCTGCGGAAGGATCATTACC--GAGTG |
| Lecanora aff expallens SPO15 | (none) | ---------------------------GAG |
| Lecanora aitema SPO1 | (none) | ---------------------AT--GAGAG |
| Lecanora albescens Lal7 | (none) | ---------------------------ATG |
| Lecanora albescens Lal9 | (none) | ---------------------------ATG |
| Lecanora albescens U172 | (none) | ---------------------------ATG |
| Lecanora allophana M120 | (none) | ---------------------TC--GAGAG |
| Lecanora allophana U231 | (none) | ---------------------TT--GAGAG |
| Lecanora andrewii Lan1 | (none) | ---------------------------ATG |
| Lecanora anopta SPO5 | (none) | -------------------------CTGAG |
| Lecanora argopholis HTL19608c | (none) | ------------------------------ |
| Lecanora austrocalifornica SPO2 | (none) | ---------------------------GAG |
| Lecanora austrotropica Papong64 | (none) | ------------------------------ |
| Lecanora bicincta eb36 | (none) | ---------------------AC--GAGAG |
| Lecanora bicincta m23 | (none) | ------------------------------ |
| Lecanora bipruinosa | (none) | ------------------------------ |
| Lecanora burgaziae SPO7 | (none) | -------------------------TTGAG |
| Lecanora caesiorubella sub glaucomodes0 | (none) | -----------------ATTAAT--GAGAG |
| Lecanora caesiorubella sub glaucomodes1 | (none) | GAACCTGCGGAAGGATCATTATC--GAGAG |
| Lecanora caesiorubella sub merrillii | (none) | -----TGCGGAAGGATCATTAAT--GAGAG |
| Lecanora californica HTL19914a | (none) | ------------------------------ |
| Lecanora campestris U225 | (none) | ---------------------TC--GAGAG |
| Lecanora carpinea | (none) | ---------------------AC--GAGAG |
| Lecanora carpinea U156 | (none) | ---------------------AC--GAGAG |
| Lecanora cateilea eb70 | (none) | ---------------------CT--GAGAG |
| Lecanora cenisia TSB 37478 | (none) | -------------------------GAGAG |
| Lecanora cf achroa HTL19841a | (none) | ------------------------------ |
| Lecanora cf fulvastra SPO8 | (none) | ---------------------AC--GAGAG |
| Lecanora chlorophaeodes U210 | (none) | -------------------------TCGAG |
| Lecanora chlorophaeodes U211 | (none) | -------------------------TTGAG |
| Lecanora cinereofusca NY1457 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Lecanora concolor AFTOLID 366 | (none) | GAACCTGCGGAAGGATCATTA----ACGAG |
| Lecanora confusa SPO9 | (none) | ---------------------AT--GA{AG |
| Lecanora conizaeoides | (none) | -------------------------CTGAG |
| Lecanora contractula | (none) | GAACCTGCGGAAGGATCATTAAC----GAG |
| Lecanora contractula U236 | (none) | ---------------------------ACG |
| Lecanora crenulata Lc1 | (none) | ---------------------------ACG |
| Lecanora crenulata Lc2 | (none) | ---------------------------ACG |
| Lecanora crenulata Lc3 | (none) | ---------------------------ATG |
| Lecanora densa SPO14 | (none) | -------------------------TTGAG |
| Lecanora dispersa0 | (none) | GAACCGCGTGAAGGATCATTAGT--GAG-- |
| Lecanora dispersa1 | (none) | GAACCGCGTGAAGGATCATTAAT--GAG-- |
| Lecanora dispersa Ld8 | (none) | ---------------------------ACG |
| Lecanora dispersa Ld9 | (none) | ---------------------------ATG |
| Lecanora dispersoareolata | (none) | -------------------------ATGAG |
| Lecanora elatinoides HTL19992d | (none) | ------------------------------ |
| Lecanora epibryon | (none) | GAACCTGCGGAAGGATCATTATC--GAGAG |
| Lecanora farinacea0 | (none) | -----TGCGGAAGGATCATTATC--GAGAG |
| Lecanora farinacea1 | (none) | GAACCTGCGGAAGGATCATTATC--GAGAG |
| Lecanora farinacea eb43 | (none) | ---------------------TC--GAGAG |
| Lecanora filamentosa GU480099 | (none) | -------------------------ATGAG |
| Lecanora flavoleprosa SPO18 | (none) | ---------------------AT--GAGAG |
| Lecanora flavopallida0 | (none) | ----------------------C--GAGAG |
| Lecanora flavopallida1 | (none) | ------------------------------ |
| Lecanora flavoviridis Papong653 | (none) | ------------------------------ |
| Lecanora flotowiana U175 | (none) | ---------------------------ATG |
| Lecanora formosa0 | (none) | GAACCTGCGGAAGGATCATTAATGAGAGAG |
| Lecanora formosa1 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Lecanora formosa2 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Lecanora fuscescens Hauck | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Lecanora fuscobrunnea Tuerk 356 | (none) | ---------------------------GAG |
| Lecanora fuscobrunnea Tuerk 446 | (none) | ---------------------------GAG |
| Lecanora gangaleoides HTL19923a | (none) | ------------------------------ |
| Lecanora garovaglii | (none) | -------------------------ACGAG |
| Lecanora garovaglii0 | (none) | GAACCGCGTGAAGGATCATTAAT----GAG |
| Lecanora garovaglii1 | (none) | GAACCGCGTGAAGGATCATTAAT----GAG |
| Lecanora garovaglii2 | (none) | GAACCGCGTGAAGGATCATTAAT----GAG |
| Lecanora hagenii Lh2 | (none) | ---------------------------ATG |
| Lecanora hagenii Lh3B | (none) | ---------------------------ACG |
| Lecanora hagenii Lh3C | (none) | ---------------------------ACG |
| Lecanora hagenii Lh6 | (none) | ---------------------------ATG |
| Lecanora helva HTL19809h | (none) | ------------------------------ |
| Lecanora helva Papong6444 | (none) | ------------------------------ |
| Lecanora horiza | (none) | GAACCTGCGGAAGGATCATTATC--GAGAG |
| Lecanora horiza u332 | (none) | ---------------------TC--GAGAG |
| Lecanora hybocarpa | (none) | GAACCTGCGGAAGGATCATTATC--GAGAG |
| Lecanora imshaugii | (none) | ------------------------------ |
| Lecanora intricata | (none) | ---------------------CT----GAG |
| Lecanora intumescens eb52 | (none) | ---------------------AC--GAGAG |
| Lecanora leproplaca HTL19558m | (none) | ------------------------------ |
| Lecanora leproplaca HTL19815r | (none) | ------------------------------ |
| Lecanora leprosa Papong6443 | (none) | ------------------------------ |
| Lecanora leprosa Papong6735 | (none) | ------------------------------ |
| Lecanora leptyrodes eb15 | (none) | ---------------------AC--GAGAG |
| Lecanora lividocinerea | (none) | ------------------------------ |
| Lecanora lojkaeana 0 | (none) | ---------------------AT--GAGAG |
| Lecanora lojkaeana 1 | (none) | ---------------------AT--GAGAG |
| Lecanora macrocyclos U273 | (none) | -------------------------ACGAG |
| Lecanora muralis0 | (none) | GAACCTGCGGAAGGATCATTAAC----GAG |
| Lecanora muralis1 | (none) | GAACCGCGTGAAGGATCATTAAC----GAG |
| Lecanora muralis2 | (none) | GAACCGCGTGAAGGATCATTAAC----GAG |
| Lecanora muralis3 | (none) | GAACCGCGTGAAGGATCATTAAC----GAG |
| Lecanora muralis4 | (none) | GAACCGCGTGAAGGATCATTAAC----GAG |
| Lecanora muralis DNA38 | (none) | GAACCTGCGGAAGGATCATTA----ACGAG |
| Lecanora muralis Hur H06086 | (none) | GAACCTGCGGAAGGATCATTA----ACGAG |
| Lecanora muralis long12 | (none) | GAACCTGCGGAAGGATCATTA----ACGAG |
| Lecanora nashii | (none) | -------------------------GCGAG |
| Lecanora novomexicana0 | (none) | ------------------------------ |
| Lecanora novomexicana BRY 55026 | (none) | GAACCTGCGGAAGGATCATTA----CTGAG |
| Lecanora novomexicana U162 | (none) | -------------------------CTGAG |
| Lecanora opiniconensisn U217 | (none) | --------------------------AGAG |
| Lecanora orosthea U244 | (none) | ---------------------AT--GAGAG |
| Lecanora pacifica HTL19901c | (none) | ------------------------------ |
| Lecanora paramerae | (none) | GAACCTGCGGAAGGATCATTATC--GAGAG |
| Lecanora perpruinosa U176 | (none) | ---------------------------ACG |
| Lecanora phaedrophthalma U291 | (none) | -------------------------CTGAG |
| Lecanora phaeocardia Papong3492 | (none) | ------------------------------ |
| Lecanora physciella Tuerk35770 | (none) | ------------------------------ |
| Lecanora plumosa Papong6965 | (none) | ------------------------------ |
| Lecanora polytropa | (none) | -------------------------TCGAG |
| Lecanora polytropa 47815UCR1 | (none) | ---------------------------GAG |
| Lecanora polytropa AFTOLID1798 | (none) | GAACCTGCGGAAGGATCATTATC----GAG |
| Lecanora polytropa Hur | (none) | GAACCTGCGGAAGGATCATTA----TCGAG |
| Lecanora pringlei BM29823a | (none) | ------------GGATCATTAAT--GAGAG |
| Lecanora pruinosa Lpr1 | (none) | ---------------------------ATG |
| Lecanora pruinosa U209 | (none) | ---------------------------ATG |
| Lecanora pseudogangaleoides subsp verdonii | (none) | ------------------------------ |
| Lecanora pulicaris | (none) | ----------------CATTATT--GAGAG |
| Lecanora queenslandica HTL19113 | (none) | ------------------------------ |
| Lecanora reuteri Lr1 | (none) | ---------------------------ATG |
| Lecanora reuteri U177 | (none) | ---------------------------ATG |
| Lecanora rugosella | (none) | ---------------------TC--GAGAG |
| Lecanora rupicola Blaha B261 | (none) | ---------------TCATTACC--GAGAG |
| Lecanora rupicola eb27 | (none) | ---------------------AC--GAGAG |
| Lecanora rupicola Opanowicz MOP | (none) | ------------------------------ |
| Lecanora saligna | (none) | -------------------------CCGAG |
| Lecanora saligna SPO24 | (none) | -------------------------ATGAG |
| Lecanora saxigena NY1447 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Lecanora semipallida Ls10 | (none) | ---------------------------ATG |
| Lecanora semipallida Ls12 | (none) | ---------------------------ACG |
| Lecanora straminea | (none) | ---------------------------ATG |
| Lecanora subcarnea u274 | (none) | ---------------------AT--GAGAG |
| Lecanora subcarpinea eb6 | (none) | ---------------------AC--GAGA? |
| Lecanora subcarpinea Pruegger 6 | (none) | -----------------ATTAAC--GAGAG |
| Lecanora subimmergens Papong643 | (none) | ------------------------------ |
| Lecanora subimmersa HTL19103b | (none) | ------------------------------ |
| Lecanora subintricata SPO27 | (none) | -------------------------CTGAG |
| Lecanora subrugosa | (none) | ---------------------TC--GAGAG |
| Lecanora sulphurea | (none) | ---------------------AT--GAGAG |
| Lecanora swartzii Baloch EB24 | (none) | ----------------ATATAAT--GAGAG |
| Lecanora swartzii eb100 | (none) | ---------------------AT--GAGAG |
| Lecanora swartzii Grube MG102 | (none) | ---------------TCATTAAT--GATAG |
| Lecanora swartzii subsp nylande | (none) | ---------------------AT--GAGAG |
| Lecanora swartzii U178 | (none) | ---------------------AT--GAGAG |
| Lecanora symmicta U205 | (none) | ---------------------AT--GAGAG |
| Lecanora toroyensis Papong7197 | (none) | ------------------------------ |
| Lecanora tropica0 | (none) | ----------------CATTACC--GAGAG |
| Lecanora tropica1 | (none) | -----TGCGGAAGGATCATTACT--GAGAG |
| Lecanora tropica2 | (none) | ---CCTGCGGAAGGATCATTACT--GAGAG |
| Lecanora vainioi Papong 7120 | (none) | ------------------------------ |
| Lecanora varia U188 | (none) | -------------------------TTGAG |
| Lecidella aff elaeochroma0 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTA |
| Lecidella aff elaeochroma1 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTA |
| Lecidella aff elaeochroma2 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTA |
| Lecidella aff euphorea0 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella carpathica1 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella carpathica3 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella carpathica Hur | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Lecidella carpathica Tuerk 3862 | (none) | ---------------------------GTG |
| Lecidella carpathica u339 | (none) | ---------------------AT--GAGAG |
| Lecidella effugiens0 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella effugiens1 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella elaeochroma3 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella elaeochroma5 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella elaeochroma Kayseri | (none) | -AACCTGCGGAAGGATCATTAAT--GAATG |
| Lecidella elaeochromoides0 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella elaeochromoides1 | (none) | --ACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella enteroleucella1 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella euphorea6 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella euphorea7 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella greenii Tuerk 33586 | (none) | ---------------------------GAG |
| Lecidella meiococca | (none) | -------------------------ATGAG |
| Lecidella patavina0 | (none) | ---------------------AT--GAGAG |
| Lecidella patavina1 | (none) | ------------------------------ |
| Lecidella patavina Nigde | (none) | GAACCTGCGGAAGGATCATTAAT--GAGCG |
| Lecidella patavina Ruprecht 48 | (none) | ---------------------------GAG |
| Lecidella patavina Sivas | (none) | ---------GAAGGATCATTAAT--GAGTG |
| Lecidella patavina Tuerk 39655 | (none) | ---------------------------GAG |
| Lecidella siplei Tuerk 35895 | (none) | ---------------------------GAG |
| Lecidella siplei Tuerk 43428 | (none) | ---------------------------GAG |
| Lecidella stigmatea0 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Lecidella stigmatea1 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Lecidella stigmatea2 | (none) | GAACCTGCGGAAGGATCATTAAC--GAGAG |
| Lecidella stigmatea3 | (none) | GAACCTGCGGAAGGATCATTAAC--GAGAG |
| Lecidella stigmatea5 | (none) | GAACCTGCGGAAGGATCATTAAC--GAGAG |
| Lecidella stigmatea7 | (none) | ------GCGGAAGGATCATTAAC--GAGAG |
| Lecidella stigmatea8 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Lecidella stigmatea Kayseri | (none) | GAACCTGCGGAAGGATCATTAAC--GAGAG |
| Lecidella stigmatea Tuerk 38608 | (none) | ---------------------------GAG |
| Lecidella stigmatea Tuerk 39665 | (none) | ---------------------------GAG |
| Lecidella tumidula1 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella tumidula2 | (none) | GAACCTGCGGAAGGATCATTAAT--GAGTG |
| Lecidella wulfenii Tuerk 39666 | (none) | ---------------------------GTG |
| Miriquidica complanata | (none) | GAACCTGCGGAAGGATCATTATC--GAGTG |
| Miriquidica garovaglii | (none) | ------------------------------ |
| Miriquidica garovaglii Hafellne | (none) | --ACCTGCGGAAGGATCATTACC--GAGAG |
| Miriquidica instrata 852 | (none) | GAACCTGCGG-AGGATCATTACC--GAGAG |
| Protoparmeliopsis achariana0 | (none) | ------------------------------ |
| Protoparmeliopsis muralis BGK24 | (none) | ----CTGC-GGAGGATCATTA----ACGAG |
| Protoparmeliopsis zareii SK 480 | (none) | -------CGGAAGGATCATTA----ACGAG |
| Pyrrhospora quernea | (none) | ---------------------CT--GAGAG |
| Ramboldia arandensis | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Ramboldia brunneocarpa | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Ramboldia elabens | (none) | ------------------------------ |
| Ramboldia gowardiana | (none) | ------------------------------ |
| Ramboldia laeta | (none) | GAACCTGCGGAAGGATCATTATT--GAGAG |
| Ramboldia petraeoides | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Ramboldia russula | (none) | GAACCTGCGGAAGGATCATTAAT--GAGAG |
| Ramboldia sanguinolenta | (none) | GAACCTGCGGAAGGATCATTAAC--GAGAG |
| Ramboldia stuartii | (none) | GAACCTGCGGAAGGATCATTACC--GAGAG |
| Rhizoplaca aspidophora | (none) | GAACCTGCGGAAGGATCATTA----TCGAG |
| Rhizoplaca chrysoleuca0 | (none) | GAACCGCGTGAAGGATCATTATT----GAG |
| Rhizoplaca chrysoleuca1 | (none) | GAACCGCGTGAAGGATCATTATT----GAG |
| Rhizoplaca chrysoleuca BRY 55019 | (none) | GAACCTGCGGAAGGATCATTA----TTGAG |
| Rhizoplaca cylindrica U305 | (none) | -------------------------CTGAG |
| Rhizoplaca haydenii | (none) | GAACCGCGTGAAGGATCATTACT----GAG |
| Rhizoplaca haydenii BRY 55033 | (none) | GAACCTGCGGAAGGATCATTA----CTGAG |
| Rhizoplaca huashanensis | (none) | GAACCTGCGGAAGGATTATTA----ATGAG |
| Rhizoplaca idahoensis BRY 55034 | (none) | GAACCTGCGGAAGGATCATTA----CTGAG |
| Rhizoplaca marginalis | (none) | GAACCGCGTGAAGGATCATTAAT----GAG |
| Rhizoplaca melanophthalma | (none) | GAACCGCGTGAAGGATCATTACC----GAG |
| Rhizoplaca melanophthalma 55059 | (none) | GAACCTGCGGAAGGATCATTA----CTGAG |
| Rhizoplaca occulta 55076 | (none) | GAACCTGCGGAAGGATCATTA----CTGAG |
| Rhizoplaca parilis0 | (none) | GAACCGCGTGAAGGATCATTACT----GAG |
| Rhizoplaca parilis1 | (none) | GAACCGCGTGAAGGATCATTACT----GAG |
| Rhizoplaca parilis 55090 | (none) | GAACCTGCGGAAGGATCATTA----CTGAG |
| Rhizoplaca peltata | (none) | GAACCTGCGGAAGGATCATTA----TCGAG |
| Rhizoplaca peltata1 | (none) | GAACCGCGTGAAGGATCATTACC----GAG |
| Rhizoplaca peltata2 | (none) | GAACCGCGTGAAGGATCATTATC----GAG |
| Rhizoplaca polymorpha 55095 | (none) | GAACCTGCGGAAGGATCATTA----CTGAG |
| Rhizoplaca porterii | (none) | GAACCGCGTGAAGGATCATTACT----GAG |
| Rhizoplaca porterii 55150 | (none) | GAACCTGCGGAAGGATCATTA----CTGAG |
| Rhizoplaca shushanii | (none) | GAACCGCGTGAAGGATCATTACC----GAG |
| Rhizoplaca shushanii 55073 | (none) | GAACCTGCGGAAGGATCATTA----CCGAG |
| Rhizoplaca subdiscrepans | (none) | GAACCTGCGGAAGGATCATTA----TCGAG |
| Rhizoplaca subdiscrepans0 | (none) | GAACCGCGTGAAGGATCATTACT----GAG |
| Rhizoplaca subdiscrepans BRY 55020 | (none) | GAACCTGCGGAAGGATCATTACC--GAGAG |
| Rhizoplaca subidahoensis U314 | (none) | -------------------------CTGAG |
| Scoliciosporum umbrinum | (none) | ------------------------------ |
| Sedelnikovaea baicalensis | (none) | ------------------------------ |
Columns
None of the columns has a description.
