CiteULike CiteULike
Delicious Delicious
Connotea Connotea

Matrix 3586 of Study 2181

About Citation title: "A phylogeny of the tropical genus Piper using ITS and the chloroplast intron psbJ-petA.".
About This study was previously identified under the legacy study ID S2188 (Status: Published).

Matrices

Title: combined

Description: Legacy TreeBASE Matrix ID = M4147

Rows

Taxon Label Row Segments Characters 1?–30
Macropiper hooglandii  (none) ----------TTATCAAAAAGAGATGCATT
Piper abalienatum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper abbreviatum  (none) TTTCTC-AG-TTATCAAAAAGAGATGCATT
Piper alatabaccum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper albispicum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper amalago 1  (none) TTCATCAAG-TTATCATAAAGAGATGCATT
Piper amalago 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper amalago 3  (none) TTCATCAAA-GGTAT????AGAGA?GCATT
Piper amalago 4  (none) AT{CT}ATCAAG-TTATCAAAAAGAGATGC
Piper amplum  (none) TTCATCAGG-TTATCAAAAAGAGATGCATT
Piper anisum 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper anisum 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper arboreum 1  (none) ------------------------------
Piper arboreum 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper arboreum 3  (none) TTCATCAAGGTTATCAAAAAGAGATGCATT
Piper arboricola  (none) TTC-TCAAG-TTATCAAAAAGAGATGCATT
Piper arieianum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper augustum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper auritifolium 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper auritifolium 2  (none) TTCATCAAG-TTATAAAAAAGAGATGCATT
Piper auritiifolium 3  (none) TTCATCAA?-TTAT?ATAAAGAGATGCATT
Piper auritum  (none) TTCATCAAG-TTATCAAAAAGATATGCATT
Piper austrocaledonicum  (none) TTCATCAAC-????CAAAAAGAGATGCATT
Piper bartlingianum 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper bavinum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper bellidifolium  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper betle  (none) TTCATCA-G-TTATCAAAAAGAGATGCATT
Piper biolleyi  (none) TTCATCAAG-TTAT?????AGAGATGCATT
Piper biseriatum  (none) TTCTTCAAG-TTATCAAAAAGAGATGCATT
Piper borbonense  (none) TTCATCCAG-TTATCAAAAAGAGATGCATT
Piper brachypodon  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper bradei  (none) TTCATCAAG-TTATCAAAAAGAGATGTATT
Piper breviamentum  (none) TTTCTC-AG-TTATCAAAAAGAGATGCATT
Piper brevipedicellatum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper calcariformis  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper callosum  (none) TTCATCAAG-TTATCAAAAAGAGATGTATT
Piper campanum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper candollei  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper caninum  (none) TTC-TCAAG-TTATCAAAAAGAAATGCATT
Piper capense 1  (none) TTCATCAAG-T?????????GAGATGCATT
Piper capense 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper cararense  (none) ------------------------------
Piper carautensei  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper carrilloanum  (none) --------G-TTATCAAAAAGAGATGTATT
Piper cavendishoides  (none) TTC-TCAAG-TTATCAAAAAGAGATGCATT
Piper cenocladum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper cernuum  (none) --------G-TTATCAAAAAGAGATGCATT
Piper bartinglianum 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper chandocanum  (none) TTCATCAAG-TT{AC}?????{CT}AGAGA
Piper chuarense  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper cinereum 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper cinereum 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper colonense  (none) TTCATCAAG-TTAT-AAAAAGAGATGCATT
Piper confertinodum  (none) ATTCTCA?G-TTATCAAAAAGAGATGCATT
Piper corcovadense  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper cordulatum 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper cordulatum 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper crassinervium  (none) TTCATCAAA-TTATTTTAAAGAGGTGCATT
Piper curtifolium  (none) TTTTTCAGG-TTATCAAAAAGAGATGCATT
Piper daguanum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper darienense 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper darienense 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper decumanum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper densum  (none) TTC-TCAAG-TTATCAAAAAGAGATGCATT
Piper divaricatum  (none) --------------------------CATT
Piper duartei  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper erectipilum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper eucalyptophyllum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper euryphyllum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper excelsum  (none) TCATCAAGG-TTATCC-AAAGAGATGCATT
Piper filistilum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper fimbriulatum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper garagaranum 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper gargaranum 2  (none) TTCATCAAC-TTATAAAAAAGAGATGCATT
Piper gibbosum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper gigas  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper granatense  (none) TT{AC}TCAAGG-TTATCAAAAAGAGATGC
Piper guahamense  (none) ?????????-???????????AGATGCATT
Piper guazacapanense  (none) TTCATCAAA-TTATGAAAAAGAGATGCATT
Piper guineense 4  (none) TTCATCAAG-TAATCAAAAAGAGATGCATT
Piper guineense 1  (none) TTCATT???-??????????????TGCATT
Piper guineense 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper guineense 3  (none) TTCATCAAG-T???CAAAAAGAGATGCATT
Piper gymnostachyum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper hancei  (none) TTCATCAAG-CAAAAAAAAAGAGATGCATT
Piper hebetifolium  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper hispidum  (none) TTTATCAAG-TTATCAAAAAGAGATGCATT
Piper hoffmanssegianum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper humistratum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper hymenophyllum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper imberbe  (none) TTCATCAAG-TTACCAAAAAGAGATGTATT
Piper immutatum  (none) ------------------------------
Piper jacquemontanum  (none) TTCATCAAC-GTTATAAAAAGAGATGCGTT
Piper quinqueangulatum  (none) TTC-TCA-G-TTATCAAAAAGAGATGCATT
Piper lancaefolium  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper laosanum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper lapathifolium  (none) TTCATCAA?-??????????????TGCATT
Piper leptostachyum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper submultinerve  (none) TTCATCAA?-?????????AGAGATGCATT
Piper nudibaccatum  (none) TTCATCA??-?????????????????ATT
Piper lolot  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper longestylum  (none) TTCATCAAA-AAATCAAAAAGAGATGCATT
Piper longipilosum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper longispicum  (none) TCATCA?GG-TTATC?AAAAGAGATGCATT
Piper longivaginans  (none) TTCATC?GA-TT?TCAAAAAGAGATGCATT
Piper magnificum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper majusculum  (none) -TTTTCAAG-TTATCAAAAAGAGATGCATT
Piper marginatum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper marsupiatum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper martensianum 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper martensianum 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper maxonii  (none) ------------------------------
Piper medellinifolium  (none) -----------------AAAGAAATGCATT
Piper melanocladum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper methysticum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper michelianum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper muelleri  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper multiplinervium 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper multiplinervum 2  (none) TTCATCAAG-TT??{CGT}AAAAAGAGATG
Piper munchanum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper muricatum  (none) TTCATCAAG-TTATCAAAAA??GATGCATT
Piper mutabile  (none) TTCATCAA?-T???????{ACT}AGAGATG
Piper myrmecophillum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper napopastazanum  (none) TTTATCAAG-TTATCAAAAAGAGATGCATT
Piper neesianum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper nudicaulis  (none) TTCATCAAG-TT?T?AAAAAGAGATGCATT
Piper nudifolium  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper obliquum 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper obliquum 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper obtusilimbum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper ottoniaefolium  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper oxystachium  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper parvulum  (none) --------------CAAAAAGAGATGCATT
Piper peltatum 1  (none) TTCATCA-G-TTATCAAAAAGAGATGCATT
Piper peltatum 2  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper pendulispicum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper perlasense  (none) TTCATCAAG-TTATCAAAAAGAGATGTATT
Piper phyttolaccaefolium  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper pierrei  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper pingbienense  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper porphyrophyllum  (none) TTCATC???-????????????????????
Piper pseudolindenii  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper pseudonobile  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper pseudopothifolium  (none) ------------------------------
Piper psilorachis 1  (none) TTCATCA??-??????????GAGATGTATT
Piper psilorachis 2  (none) TTCATCAAG-TTATCAAAAAGAGATGTATT
Piper pulchrum  (none) --------------CAAAAAGAGATGCATT
Piper reticulatum 1  (none) ATTCTCAAG-TTATCAAAAAGAGATGCATT
Piper reticulatum 2  (none) TTCATCAAG-TTATCAAAAAGAGGTGCATT
Piper retrofractum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper riparense  (none) GATCTCAAG-TTATCAAAAAGAGATGTATT
Piper rusbyi  (none) TTCATCAA?-??????????GAGATGCATT
Piper sagittifolium 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper sagittifolium 2  (none) --------------CAAAAAGAGATGCATT
Piper sancti felicis  (none) TTTATCAAG-TTATGAGAAAGAGATGCATT
Piper sanctum 1  (none) TTCATCAAG-TTTTCAAAAAGAGATGCATT
Piper sanctum 2  (none) TTCATCAAG-TT???????AGAGATGCATT
Piper sanctum 3  (none) TTCATCAAG-TTATAAAAAAGAGATGCATT
Piper sanctum 4  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper sasaimanum  (none) ---------------AAAAAGAGATGCATT
Piper semiimersum  (none) TTCATCAAA-AAAACAAAAAGAGATGCATT
Piper solmsianaum  (none) TTCATCAAG-TTATCAAAAAGAGATGTATT
Piper sorsogonum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper spoliatum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper squamulosum  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper subpenninerve  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper subscutatum  (none) TTCATCAAG-TTATCAAAAAGAGATGTATT
Piper thomsonii  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper trigonum  (none) TTCATCAAG-TTATAAAAAAGAGATGGATT
Piper truncatum  (none) TTCATC-AG-TTATCAAAAAGAGATGCATT
Piper tuberculatum 1  (none) --------------CAAAAAGAGATGCATT
Piper tuberculatum 2  (none) TTGATCAAG-TTATCAAAAAGAGATGCATT
Piper sp. nov 1  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper umbellatum  (none) TTATCAAGG-TTATCAAAAAGAGATGCATT
Piper sp. nov. 2  (none) TTC-TCAAG-TTATCAAAAAGAGATGCATT
Piper vellosoi  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper villaramulum  (none) TTTATCAAG-TTATCAAAAAGAGATGCATT
Piper wallichii  (none) TTCATCAAG-TTATCAAAAAGAGATGCATT
Piper yucatanense 1  (none) TTCATCAAG-TTATGAAAAAGAGATGCATT
Piper yucatanense 2  (none) TTCATCAAG-????????AAGAGATGCATT
Piper yucatanense 3  (none) TTCATCAAC-??????????GAGATGCATT

Columns

None of the columns has a description.