#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 17, 2024; 10:51 GMT TreeBASE (cc) 1994-2008 Study reference: Medina M., & Walsh P. 2000. Molecular Systematics of the Order Anaspidea Based on Mitochondrial DNA Sequence (12S, 16S, and COI). Molecular Phylogenetics and Evolution, 15(1): 41-58. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S713] BEGIN TAXA; TITLE TaxonLabelSet10522; DIMENSIONS NTAX=16; TAXLABELS Akera_bullata Aplysia_cervina Aplysia_punctata Bulla_gouldiana Bursatella_leachii Dolabella_auricularia_Guam Dolabella_auricularia_Mexico Dolabrifera_dolabrifera Haminoea_virescens Notarchus_indicus_Japan Notarchus_indicus_Philippines Petalifera_ramosa_Canary_Islands Petalifera_ramosa_Philippines Phyllaplysia_sp. Phyllaplysia_taylori Stylocheilus_longicauda ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3697] TITLE 16S; LINK TAXA = TaxonLabelSet10522; DIMENSIONS NCHAR=432; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Akera_bullata AGCCTAAAGA---ATGGATTTTAGGTAAAGCCTGCCCAGTGAGAAA---TTTAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCGTAATCAGTTGACTTTTAAATGGAGTCTTGTATGAATGGATTAATGGAATTTAGCTGTCTCTTTCTTATTCTATTGAAATTACTAACTAGGTGAAAAGGCCTAGGAATGAAAAAAGACGAGAAGACCCTTAGAGTTTTAAACAAAGGTTTTTGTTGGGGCGACAAGAAGACA---AGTAACTCTTCTAGAGAAAA----GAACATGCCGACTTTTATAAGATTGGATAAACTACCTTAGGGATAACAGCATAATCTAG-TAATTAGGTTTGTGACCTCGATGTTGGACTAGGAAACTAACACTCTAGCAGAGTGTTTGGTGAGGTTCTGTTCGAACTTATATTCCT Aplysia_cervina AGCCTAGGGA--AAATTATCCTAGGTGAAACCTGCCCGGTGACTAGA-TTTTAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCGTAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATTTATGGGATTAAGCTGTCTCTTTTGTATTCTATTGAAATTACTAATTAGGTGAAAAGGCCTATAAATGAAAAAAGACGAGAAGACCCTTAGAGTTTTAATAATAGGTTTTTGTTGGGGCGACAAGAAGACATATA-TAACTCTTCTATTAGAAAGAT---ACTTGCCGGTTCTTTTAAGTATGGATAAACTACCTTAGGGATAACAGCATAATCCAG---TTTGGGTTTGTGACCTCGATGTTGGACTAGGAAAATTATGCCCTAGCAGGGTGTATATTTAGGTTCTGTTCGAACTTCTTTTCCT Aplysia_punctata AGCCTAGGGA--GAATTATCTTAGGTAAAACCTGCCCGGTGACTAGA-TTTTAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCGTAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATTTATGGGATTAAGCTGTCTCTTTTGTATTCTATTGAAATTACTAATTAGGTGAAAAGGCCTAAAAATGAAAAAAGACGAGAAGACCCTTAGAGTTTTAATA-ATGGTTTTTGTTGGGGCGACAAGAAGACACTTATTAACTCTTCTATTACAAAATAC--TCTTGCCGGTTCTTTTAAGTATGGATAAACTACCTTAGGGATAACAGCATAATCCAG---TTTGGGTTTGTGACCTCGATGTTGGACTAGGAAAGTTACACCCTAGCAGGGTGTATATTTAGGTTCTGTTCGAACTTCTCTTCCT Bulla_gouldiana AGCCCTAAGT---AATGATTTAGGGTGAGGCCTGCCCAATGAGTAA-TCTTTAATGGCCGCGGTACTTTGACCGTGCTAAGGTAGCATAATCAGTTGACTTTTGAATGAAGTCTGGAATGAATGGGAGAACGGAATTTAGCTGTCTCAACCTCTTTATTATGAATTTACTAATTAAGTGAAAAGGCTTAAGAAAGATAAAAGACGAGAAGACCCTGAGAGTTTTGTT---ATGATTTCGTTGGGGCGACGGATAA-TCAG---TGGAACATTCTTAATTAACAG------GA-CGGTTTTATCATGAGTGGATAAACTACCTCAGGGATAACAGCATAATCTT----TTTAGGTTTGTGACCTCGATGTTGGACTAGGAAGCTTTATGGCTAGCCGCCT-TTAAAGGGGATTCTGTTCGAATTCTTACTCCT Bursatella_leachii AGCCTAGAGA--AAATTATTCTAGGTGAAGCCTGCCCAGTGAAAA--TTTTTAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCGTAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATCTATGGGATTAAGCTGTCTCTTATCTACTATACTGAAATTACTAATTAGGTGAAAAGGCCTAAAAATGAAAAAGGACGAGAAGACCCTTAGAGTTTTGATTATAAATTTTTGTTGGGGCGACGGGAAGACATTA--TAACTCTTCTATAATAAGACTT--ACTTGCCGGTTTTTTCAAGTATGGATAAACTACCTGAGGGATAACAGCATAATCCA--TTAATGGGTTTGTGACCTCGATGTTGGACTAGGAAACTTATATTCTAGCAGAATATATAGTTAGGTTCTGTTCGAACTTTCTCTCCT Dolabella_auricularia_Guam AGCCTAGAGG--GAATAATTCTAGGTGAAGCCTGCCCAGTGACAGAGATTTTAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCATAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATCCATGGGATTAGGCTGTCTCTTCCTTACTCTATTGAAATTACTAAATAGGTGAAAAGGCCTATAAATGAAAAAAGACGAGAAGACCCTTAGAGTTTTTATGAAGGATTTTTGTTGGGGCGACAAGAAGACATTTAGTAACTCTTCTGGTAGACAATTTGAACTTGCCGATTCTTTTAAGTATGGATAAACTACCTGAGGGATAACAGCATAATCCAA-TTTTTGGGTTTGTGACCTCGATGTTGGACTAGGAAACTTGTACTCTAGCAGGGTATAAAGTTAGGTTCTGTTCGAACTTTTCTTCCT Dolabella_auricularia_Mexico AGCCTAGAGG--GAATTATTTTAGGTGAAGCCTGCCCAGTGATAGAGA-TTTAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCATAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATCCATGGGATTAAGCTGTCTCTTCCTTATTCTGTTGAAATTACTAAATAGGTGAAAAGGCCTATAAATGAAAAAAGACGAGAAGACCCTTAGAGTTTTTATA-AAGATTTTTGTTGGGGCGACAAGAAGACATTAT-AAACTCTTCTAGTATATAGTTTG-ACTTGCCGATTTTTTTAAGTATGGATAAACTACCTGAGGGATAACAGCATAATCCAATTTTTTGGGTTTGTGACCTCGATGTTGGACTAGGAAACTTATACTCTAGCAGAGTGTAAAGTTAGGTTCTGTTCGAACTTTTCTTCCT Dolabrifera_dolabrifera AGCCTAGAGGGAGAATGATTCTAGGTGAAGCCTGCCCGGTGATTGAG--TTTAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCATAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATTTATGGGATTAAGCTGTCTCTTCCCTATTTTATTGAAGTTACTAACTAGGTGAAAAGGCCTAGGAATGAAAAAGGACGAGAAGACCCTTAGAGTTTTAATA-ACGATTTTTGTTGGGGCGACAAGAAGACATCTA-TAACTCTTCTAGTGTAAG-TTT-AACTTGCCGGTTTTTTCAAGTATGGATAAACTACCTGAGGGATAACAGCATAATCCA--TTAATGGGTTTGTGACCTCGATGTTGGACTAGGAAACTTATATCCTAGCAGGATGTATAGTTAGGTTCTGTTCGAACTTTTTCTCCT Haminoea_virescens AGCCCTAAGA----TTAATTTAGGGTAATGCCTGCCCAATGAGAAA---TTTAATGGCCGCGGTACTTTGACCGTGCTAAGGTAGCATAATCAATTGACTTTTAAATGAAGTCTGGAATGAAAGGAGGAACGGAATTTAGCTGTCTTAATTTTTTTAGTTTGAAGTTACTAACTAAGTGAAAAGGCTTAGGAAAGATAAAAGACGAGAAGACCCTAAGAGTTTTTAAT--ATATTTTTGTTGGGGCGACATAGGG-TCAAATTTTAAACACCCTTGATATATAT------GA-CGGATTTTTCATGATAAGATAAACTACCTTAGGGATAACAGCATAATTTT---TTTAAAGTTTGTGACCTCGATGTTGGACTAGGAAGCCTTTAGGCTAGCTGCCT-AATAGGGGGATTCTGTTCGAATTTTCACTCCT Notarchus_indicus_Japan AGCCTGGGGA---ATTGA-TCTAGGTGAGACCTGCCCGGTGAATTA--TTTTAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCGTAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATCTTTGGGATTAAGCTGTCTCTACCTTATTCTATTGAAATTACTAACTAGGTGAAAAGGCCTAGGAATGAAAAAAGACGAGAAGACCCTTAGAGTTTTTACT-AAAGTTTTTGTTGGGGCGACAAGAAGACATATA-TAACTCTTCTATTATACGA-TTG--CATGCCGATCTTATTAAGAATGGATAAACTACCTGAGGGATAACAGCATAATCCAG---TATGGGTTTGTGACCTCGATGTTGGACTAGGAATCTTATGCCCTAGCCGGGTGTA-AGGAAGGTTCTGTTCGAACTATTATTCCT Notarchus_indicus_Philippines AGCCTGGGGA---ATTGATTCTAGGTGAGACCTGCCCGGTGAATTA--TTTTAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCGTAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATCTTTGGGATTAAGCTGTCTCTACCTTATTCTATTGAAATTACTAACTAGGTGAAAAGGCCTAGGAATGAAAAAAGACGAGAAGACCCTTAGAGTTTTTACT-AAAGTTTTTGTTGGGGCGACAAGAAGACATATA-TAACTCTTCTATTATACGA-TTG--CATGCCGATCTTATTAAGAATGGATAAACTACCTGAGGGATAACAGCATAATCCAG---TATGGGTTTGTGACCTCGATGTTGGACTAGGAATCTTATGCCCTAGCCGGGTGTA-AGGAAGGTTCTGTTCGAACTATTATTCCT Petalifera_ramosa_Canary_Islands AGCCTAGAGGGA--ATCATTCTAGGTGAAGCCTGCCCAGTGAAA--TTTTTCAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCGTAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATCCATGGGATTAAGCTGTCTCTTCCTTACTCTATTGAAATTACTAACTAGGTGAAAAGGCCTAGGAATGAAAAAGGACGAGAAGACCCTTAGAGTTTTAATC-ATGATTTTTGTTGGGGCGACAAGAAGACATATA-TAACTCTTCTATAAAAAGATCT--ACTTGCCGGTTTTTTCAAGTATGGATAAACTACCTGAGGGATAACAGCATAATCCA---TTTTGGGTTTGTGACCTCGATGTTGGACTAGGAAACTTATGTCCTAGCAGGATGTATAGTTAGGTTCTGTTCGAACTTTTTCTCCT Petalifera_ramosa_Philippines AGCCTAGAGAGA--ATTATTCTAGGTGAAGCCTGCCCAGTGAAA--CTTTTCAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCGTAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATCCATGGGATTAAGCTGTCTCTTCCTTACTCTATTGAAATTACTAACTAGGTGAAAAGGCCTAGGAATGAAAAAGGACGAGAAGACCCTTAGAGTTTTAATC-ATGATTTTTGTTGGGGCGACAAGAAGACATATA-TAACTCTTCTATAAAAAGATCC--ACTTGCCGGTTTTTTCAAGTATGGATAAACTACCTGAGGGATAACAGCATAATCCA---TTTTGGGTTTGTGACCTCGATGTTGGACTAGGAAACTTATGTCCTAGCAGGATGTATAGTTAGGTTCTGTTCGAACTTTTTCTCCT Phyllaplysia_sp. AGTCTAGAGA-AAAGTTATTCTAGATGAAGCCTGCCCGGTGATCAGA--TTTAACGGCCGCGGTACTTTGACCGTGCTAAGGTAGCGTAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATTTATGGGATTAAGCTGTCTCTTCCGCACTCTATTGAAATTACTAACTAGGTGAAAAGGCCTAGAAATGAAAAAGGACGAGAAGACCCTTAGAGTTTTTATAAAGAATTTTTGTTGGGGCGACAAGAAGACATCTA-TAACTCTTCTGTTGTAAAGTTT---ACTGCCGGGTTTTTCAAGAACGGATAAACTACCTGAGGGATAACAGCATAATCCA--TTAATGGGTTTGTGACCTCGATGTTGGACTAGGAAACTTGCATTCTAGCAGAATGTATAGTAAGGTTCTGTTCGAACTTTTTATCCT Phyllaplysia_taylori AGCCTAGAGA--AAATTATTCTAGGTGAAGCCTGCCCGGTGATTTAA--TTTAACGGCCGCGGTACTT-GACCGTGCTAAGGTAGCGTAATCAGTTGACTTTTAAATGAAGTCTTGTATGAATGGATTTATGGGATTAAGCTGTCTCTTCTGTACTTTATTGAAATTACTAACTAGGTGAAAAGGCCTAGGAATGAAAAAGGACGAGAAGACCCTTAGAGTTTTTATA-ACGATTTTTGTTGGGGCGACAAGAAGACATCTA-TAACTCTTCTATTATAAAACTT-ATCTTGCCGGGTTTTCCAAGTATGGATAAACTACCTGAGGGATAACAGCATAATCCA--TTAATGGGTTTGTGACCTCGATGTTGGACTAGGAAACTTACATCCTAGCAGGATGTATAGTTAGGTTCTGTTCGAACTTTTTCTCCT Stylocheilus_longicauda AGCTTAGAGA---AATTATTCTAGGTGAAGCCTGCCCGGTGAAGA----TTTAACGGCCGCGGTACCCTGACCGTGCTAAGGTAGCGTAATCAGTTGACTTTTAAATGAAGTCTAGTATGAATGGATCAATGGGATTAAGCTGTCTCTTTTTTATTTTATTGAAATTACTAATTAGGTGAAAAGGCCTAAAAGTGAAAAAGGACGAGAAGACCCTTAGAGTTTTAATAATAAATTTTTGTTGGGGCGACAAGAAGACATAAT-TAACTCTTCTAAAATAAAATTT--ACTTGCCGGTTTTTCCAAGAATGGATAAACTACCTAAGGGATAACAGCATAATCCA--TTTATGGGTTTGTGACCTCGATGTTGGACTAGGAAACTTGTATCCTAGCAGGATATATAGTTAGGTTCTGTTCGAACTTTTTCTCCT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 16S) = N: 1-432; CODONPOSSET CodonPositions (CHARACTERS = 16S) = N: 1-432; END;