#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 8:12 GMT

TreeBASE (cc) 1994-2008

Study reference:
Medina M., & Walsh P. 2000. Molecular Systematics of the Order Anaspidea Based on
Mitochondrial DNA Sequence (12S, 16S, and COI). Molecular Phylogenetics and Evolution,
15(1): 41-58.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S713]

BEGIN TAXA;
        TITLE  TaxonLabelSet10522;
        DIMENSIONS NTAX=16;
        TAXLABELS
            Akera_bullata
            Aplysia_cervina
            Aplysia_punctata
            Bulla_gouldiana
            Bursatella_leachii
            Dolabella_auricularia_Guam
            Dolabella_auricularia_Mexico
            Dolabrifera_dolabrifera
            Haminoea_virescens
            Notarchus_indicus_Japan
            Notarchus_indicus_Philippines
            Petalifera_ramosa_Canary_Islands
            Petalifera_ramosa_Philippines
            Phyllaplysia_sp.
            Phyllaplysia_taylori
            Stylocheilus_longicauda
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3698]

	TITLE 12S;
	LINK TAXA = TaxonLabelSet10522;
	DIMENSIONS NCHAR=377;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                            10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       ]
[                                             .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .       ]
Akera_bullata                        AAGGAGTGAAAA--CAACTACCTAAGCACT-AATACCT--------TC---------CAAGGTTAAAACTTAAAAAGCATGGCGGCGGAAAAAAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCCCAAGGGAAG-TTACCTTTAT----TTAGAGTTTGTATACCGCCGTTTAGGACCC-TCT-TACGGAGGGTCCGAGAAGATTATTC--ATCAAGAAAACAGGTCATGGTGCAGCCAATATAAAGGTCT--TGAGGTGAGTTACAATAAAAATTTTTTTCGGAATAAAAATGTAAGATT-GAAG-GAAGATGGACTT-AACAGTAATTGCTAAAG-GAATACG-CTTTGAAG-AAAAAATTTTTC-GTGT
Aplysia_cervina                      AAGGAGTGAAAACTTAAATATCTAAGCACT-AAGGCTTAAAAGTGATTAA--ACTAA-AAAGCTAAAACTTAAAGAACATGGCGGCGGAAATAAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAAAAAAA-TCACCTTTAT----TTAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TGAGGAGGGCCCAGAATTATGTA----ATAAATAAGACAGGTCATGGTGCAGCCTATATAAAGGACT-GTAAGGTGAGTTACAATAGTAATTTACTTCGGAATAAAAATGTAAGAATAAAAG-GAAGATGGACTT-AACAGTAATTACTAAAG-AAATATG-TTTTGAAACACAAAGATTTTC-GTGC
Aplysia_punctata                     CGGGAGTGAAAA-TAAAATATCTAAGCACT-AAGGCTTACCAGTGAATAAAAGCTAACAAAGCTAAAACTTAAAGAACATGGCGGCGGAAATTAAGTTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAAAAAAA-TCACCTTTTT----TAAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TAAGGAGGGCCCGAAATGG-ATTAA---CCGTCAAGACAGGTCATGGTGCAGCCTATATAAAGGACTAGTAAGGTGAGTTACAATAATAATTTATTTCGGAATAAAAATGTAAAAATTGAAG-GAAGATGGACTT-AACAGTAATTACTAAAG-AAGTATG-TTTTGAAACACAAAAATTTTCGGTGC
Bulla_gouldiana                      TAGCCCACAAAGA---AAATTCTAAGCACT-ACAGCTA-------------------TAAAGCTAAAACTTAAAGAACATGGCGGC-GGGCTCTAACTTCAGGGGAACCTACCAGATAAATGATAACCCGCAAAATT-----TCTTACTCTCCCTAATAACTTATATATCGCCGTCAGTGTGATCTTTGAAGAAA-ATTACAAAATGTATTAC---TACAAGAAGACAGGTCATGACATAGTAGATGGGAGAGAC--GTAAGGTGGGTTACAATAAAAATTTTTTTCAGAC-GCTGGTTCATAAATCAGCTATAAGATGGACTTGAA-AGTAAATGTTAAAAGAAATATGCAACTGAATC-AATAAGAGCAC-GTGT
Bursatella_leachii                   AAGGAGCCAAAAA-TAAATATCTAAGCACT-AATACTTTA------TC--------ATAAAGTTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGATAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TCAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TAAGGAGGGCCCGAAATGA-GTAAG---TCAGGAAGACAGGTCATGGTGCAGCCTATGTAAAGGACTT-TAAGGTGAGTTACAATAAAAATTTCTTTCGGAATGAAGATGTAATAACTAAAG-GAAGATGGACTT-AAAAGTAATAGCTAAAG-AAGTATG-CTTTGAATTACAAAAATTTTC-GTGC
Dolabella_auricularia_Guam           AAGGAGTAGAAA-TACATAATCTAAGCACT-AATGCCTAAC---------------GCAAGGCTAAAACTTAAAGAACATGGCGGCGAGAATAAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCCCAAAAGAAA-TCACCTTTAT----TTAAAGTTTGTATACCGCCGTCTAGGGCCC-TCT-CGAGAAGGACCCGAAAAGAATAAAAA-TTCTATAAGACAGGTCATGGTGCAGCCCATATAAAGGTCA-GTAAGGTGAGTTACAATAAATAGTTTTTTCGGAGTAAAGATGTAACAGCAAAAACAAAGATGGACTT-AACAGTAATTATTAGAG-AAATATA-TTTTGAAGAA-AAAAATTCTC-GTGC
Dolabella_auricularia_Mexico         AGGGAGCAAAAA-TATATAATCTAAGCACT-AATGCCTAAC---------------GTAAGGCTAAAACTTAAAG?ACATGGCGGCGAGAATAAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAAAAAAA-TCACCTTTAT----TCAAAGTTTGTATACCGCCGTCTAGGGCCC-TCT-CGAGAAGGACCCGAAAAGAATAAAAATTTCCATAAGACAGGTCATGGTGCAGCCTATATAAAGGTCA-GTAAGGTGAGTTACAATAAATAATTTTTTCAGAGTAAAGATATAATAGCAGAAACAAAGATGGACTT-AACAGTAATTATTAAAG-AAATATA-TTTTGAAG--TAAAAATTCTC-GTGC
Dolabrifera_dolabrifera              AAGGTGCTAAAAAC--AATATCTAAGCACT-AATGCTAAAAATTG-----------CCAAAGCTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TAAAAGTTTGTATACCGCCGTCTAGGGCCC-TTT-TGAGAAGGACCCGAAAAGG-TTAAG---CCAAAAAGACAGGTCATGGTGCAGCCTATGTGAAGGACAT-TAAGGTGAGTTACAATAAAAACTTTTTTCGGAATAGAGATGTAAGAATAATAA-GAAGATGGACTT-AAAAGTAATTGCTATAG-AAATATG-CTTTGAATTACAAAAATTTTC-GTGC
Haminoea_virescens                   TAACCCACAAGAA--AAATCCTTAAGCACT-ACAGCTC-------------------TAAAGCTAAAACTTAAATAACATGGCGGC-GAGCTTAAATTTCAGAGGAACCTACCAGGTAAATGATAACCCGCAATTTATTCTTACTTTATC----TAAAAGTTTATATATCGCCGTCTAGTAATC-TTC-CGAGAAGGCTACAAAATGTACTAT---TACAATAAGACAGGTCATGACATAGCATATGATAAAGACT--TGAGGTGGGTTACAATAAGAAATTCTTTCGGAAAAGTTGCCTAAAGGCATGCTCCAAGATGGATTTGAA-AGTAATAGTTAA-GATAAATAGACTTTGAATT-TTTCTAAGTTC-GTGT
Notarchus_indicus_Japan              AAGGAGCCACAA--TAATAATCTAAGCACT-AAGGCT------------------ATAGTAGCTAGAACTTAAAGAACATGGCGGCAAGAATAATTTTT-AGGGGAACTTACCAGGTAATAGACAACCCGCAAAAAACA-TCACCTTTAT----TTAAAGTTTGTATACCGCCGTCTAGGGCTC-TCT-TGAGAAGGGCCCGCTAA-----------CC-AAAAGACAGGTCATGGTGCAGCCAATATAAAGGACTA-TAAGGTGAGTTACAATAAAGAATGTTTTCGGAATTGAAATGTAAAAGTGATAA-GAAGATGGACTT-AACAGTAATTGCTAAAG-AAATATG-CTTTGAAGTATAAAGATTCTC-GTGC
Notarchus_indicus_Philippines        AAGGAGCTACAA--TAATAATCTAAGCACT-AAGGCT------------------ATAGTAGCTAAAACTTAAAGAACATGGCGGCAAGAATAATTTTT-AGGGGAACTTACCAGGTAATAGACAACCCGCAAAAAACA-TCACCTTTAT----TTAAAGTTTGTATACCGCCGTCTAGGGCTC-TCT-TGAGAAGGGCCCGCTAA-----------CC-AAAAGACAGGTCATGGTGCAGCCAATATAAAGGACTA-TAAGGTGAGTTACAATAAAGAATGTTTTCGGAATTGAAATGTAAAAGTGATAA-GAAGATGGACTT-AACAGTAATTGCTAAAG-AAATATG-CTTTGAAGTATAAAGATTCTC-GTGC
Petalifera_ramosa_Canary_Islands     AAGGAGCCAAAAA-TAGTCATCTAAGCACT-AATGCT---------TC---GGC---CATAGTTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TTAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TGAGAAGGGCCCGAAAAGG-CTAAA---CCAGGAAGACAGGTCATGGTGCAGCCTATGTAGAGGACAT-TAAGGTGAGTTACAATAAAAATTTCTTTCGGAATAGAGATGTAATAACGATAG-GAAGATGGACTT-AAAAGTAATTGCTAGAG-AAATATG-CTTTGAATTACAAAAATTTTC-GTGC
Petalifera_ramosa_Philippines        AAGGAGCCAAAAA-TAATCATCTAAGCACT-AATGCT---------TC---GGC---CATAGTTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TTAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TGAGAAGGGCCCGAAAAGG-ATAAA---CCAAGAAGACAGGTCATGGTGCAGCCTATGTAGAGGACAT-TAAGGTGAGTTACAATAAAAATTTCTTTCGGAATAGAGATGTAATAGCGATAG-GAAGATGGACTT-AAAAGTAATTGCTAGAG-AAATATG-CTTTGAATTACAAAAATTTTC-GTGC
Phyllaplysia_sp.                     AAGGAGCTAAAA-TAAAATATCTAAGCACT-AATGCTAAAATATG-------------AAAGCTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TAAAAGTTTGTATACCGCCGTCTAGGGCCC-TTT-TGAGAAGGGCCCGAAAAGG-TTCAG---CCAGGAAGACAGGTCATGGTGCAACCTATGTAAAAGACT-GTAAGGTGAGTTACAATAAAAACTTTTTTCGGAATAAAGATGTAAGAACAATAA-GAAGATGGACTT-AAAAGTAATTGCTAAAG-AAATACG-CTTTGAATTACAAAAATTTTC-GTGC
Phyllaplysia_taylori                 AAGGAGCTAAAA-TAAAATATCTAAGCACT-AATGCTAATGAATG------------CAAAGCTAAAACTTAAAGGACATGGCGGCGGAAATTAAATTT-AGGGGAATTTACCAGGTAATTGACAACCCTCAAGAAAAG-TCACCTTTAC----TAAAAGTTTGTATACCGCCGTCTAGGGCCC-TTT-TGAGAAGGGCCCGAAAGGG-TAAAG---CCAGGAAGACAGGTCATGGTGCAGCTAATGTAAAGGACAT-TAAGGTGAGTTACAATAAAGAATTATTTCGGAATGAAGATGTAACAGCGACAG-GAAGATGGACTT-AAAAGTAATTGCTAAAG-AAATACG-CTTTGAATTACAAAAATTTTC-GTGC
Stylocheilus_longicauda              AAGGAGC?AAAA-TAGTCTATCTAAGCACTCAATGCT---------TC---GGC---CATAGTTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TTAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TGAGAAGGGCCCGAAAAGG-CTAAA---CCAGGAAGACAGGTCATGGTGCAGCCTATGTAGAGGACAT-TAAGGTGAGTTACAATAAAAATTTCTTTCGGAATAGAGATGTAATAACGATAG-GAAGATGGACTT-AAAAGTAATTGCTAAAG-AAATATG-CTTTGAATTACAAAAATTTTC-GTGC
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = 12S) = 
		N: 1-377;
CODONPOSSET  CodonPositions (CHARACTERS = 12S) = 
		N: 1-377;
END;