#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 5:25 GMT

TreeBASE (cc) 1994-2008

Study reference:
Du plessis I.L., Druzhinina I., Yarden O., & Jacobs K. 2016. The diversity of Trichoderma
spp. in South Africa. Mycologia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19505]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=23;
        TAXLABELS
            'Trichoderma crassum DAOM_164916'
            'Trichoderma fertile DAOM_167161'
            'Trichoderma gelatinosum CPK_1618'
            'Trichoderma gelatinosum GJS_88-17'
            'Trichoderma helicum DAOM_230016'
            'Trichoderma helicum DAOM_230017'
            'Trichoderma longipile CBS_120953'
            'Trichoderma longipile DAOM_177227'
            'Trichoderma longipile GJS_91-93'
            'Trichoderma phyllostachydis CBS_114071'
            'Trichoderma phyllostachydis GJS_92-123'
            'Trichoderma spirale CBS_120963'
            'Trichoderma spirale DAOM_177714'
            'Trichoderma spirale DAOM_183974'
            'Trichoderma spirale DAOM_229883'
            'Trichoderma spirale PPRI_20681'
            'Trichoderma strictipile DAOM_167072'
            'Trichoderma strictipile DAOM_172827'
            'Trichoderma virens DAOM_237548'
            'Trichoderma virens GJS_06_114'
            'Trichoderma virens GJS_95-78'
            'Trichoderma virens GLI_39'
            'Trichoderma virens PPRI_20676'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M37201]

	TITLE Trichoderma_virens_clade_sup._fig._3;
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=371;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                  10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370 ]
[                                                   .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         . ]
'Trichoderma crassum DAOM_164916'          AGT-GGGGGTGCGCCAGCA----ACCCCACCACTACCT--CGCTGC-TTTTTGCCCTCGT-CTACCACTTCCCAGTCCTCATTC--AACG-ATCTGTGTCTCGTTA--GTTGCAGCAATGCTAACCACCGTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCCGATACTATGTCACCGTCATTGGTATGTCTCATCA----CATTCATCCCGCAACTACAAACCAGTGCTAACCAAAACCT--CACAGACGCCCCCGGCCACCGTGATTTCATC
'Trichoderma fertile DAOM_167161'          AGT--GGGGTGTACCGGCA----ACCCCACTGCCGCTCACT------GTTCTGCCCTTGA-TTACCACTGCCCAG-TGTCATTC--AACGCTTTTGTGCCT-GTCA--CTTGCAGCGATGCTAACCACGTTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCATGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATCGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTGATTCATCACATTCATGCGGCATCGGCAAGCATGTGCTAACACAAACTT--GACAGACGCTCCCGGCCATCGTGATTTCATC
'Trichoderma gelatinosum CPK_1618'         AGT-GGGGTGGCACCAGCATTCCCCCCCACCACCACCTCTCACTGC-TTTCTGCTCTTGT-CTACCGCTACACTGTTGCCATTC--AGCGCTTTTGTGTCTCGT----------GCGATGCTAACCGCCTTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACTGTCATTGGTATGTCTGATCTATGA---CCGTCCTCCGACAGCTAGCCCGTGCTAATCGAAGTCTCACACAGATGCTCCCGGCCATCGTGATTTCATC
'Trichoderma gelatinosum GJS_88-17'        AGT-GGGGTGGCACCAGCATTCCCCCCCACCACCACCTCTCACTGC-TTTCTGCTCTTGT-CTACCGCTACACTGTTGCCATTC--AGCGCTTTTGCGTCTCGT----------GCGATGCTAACCGCCTTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACTGTCATTGGTATGTCTGATCTATGA---CCGTCCTCCGACAGCTAGCCCGTGCTAATCGAAGTCTCACACAGATGCTCCCGGCCATCGTGATTTCATC
'Trichoderma helicum DAOM_230016'          AGT-GGGGGCGCACAAGCA----ACCCCACCACTATCT--CGTAGC-TTTTTTTCCCTGCTCTATCAAT---------------------------TGTATCAATA---GTTCAGCGATGCTAACCACCTTTCCCTCTACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCATTCATCGCATCCGAGTCGCATCAGTCAGCCAGTGCTAACAATAGCTT--CACAGACGCTCCCGGCCACCGTGATTTCATC
'Trichoderma helicum DAOM_230017'          AGT-GGGGGCGCACAAGCA----ACCCCACCACTATCT--CGAAGC-TTTTTTTCCCTGCTCTATCAAT---------------------------TGTATCAATA---GTTCAGCGATGCTAACCACCTTTCCCTCTACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCATTCATCGCATCCGAGTCGCATCAGTCAGCCAGTGCTAACAATAGCTT--CACAGACGCTCCCGGCCACCGTGATTTCATC
'Trichoderma longipile CBS_120953'         AGT-GGGGGCGCA-CAGCA----ACCCCACCACTGCCATTCACTGG-TTTTTGCACTTCA-CTACAACTCC-CAGCTGCCACTC--AGCACCTCTATATCTCGTCA--CTTTCAGCGATGCTAACCATCTTTCCCCCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCATGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTGATTCATCATTTCTGTGCTGCGTCTGCAAGCTTGTGCTAATGCAAACAT--GACAGACGCTCCCGGCCACCGTGATTTCATC
'Trichoderma longipile DAOM_177227'        AGT-GGGGGCGCA-CAGCA----ACCCCACCACTGCCATTCACTGG-TTTTTGCACTTCA-CTACAACTCC-CAGCTGCCACTC--AGCACCTCTATATCTCGTCA--CTTTCAGCGATGCTAACCATCTTTCCCCCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCATGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTGATTCATCATTTCTGTGCTGCGTCTGCAAGCTTGTGCTAATGCAAACAT--GACAGACGCTCCCGGCCACCGTGATTTCATC
'Trichoderma longipile GJS_91-93'          AGT-GGGGGCGCA-CAGCA----ACCCCACCACTGCCATTCACTGC-TTTTTGCACTTCA-CTACAACTCC-CAGCTGCCACTC--AGCACCTCTATATCTCGTCA--CTTTCAGCGATGCTAACCATCTTTCCCCCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCATGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTGATTCATCATTTCTGTGCTGTGTCTGCAAGCTTGTGCTAATGCAAACAT--GACAGACGCTCCCGGCCACCGTGATTTCATC
'Trichoderma phyllostachydis CBS_114071'   AGT-GGGGGCGCACCGGCA----ACCCCACCACTGCCA---------CTTTTGCCCTTCA-CTGCCGTTATCCAGTTACCATTTCAAACGCTTTTGTGTGTCATCACTTTCACAGCGATGCTAACCATTTTTCCCTCGATAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGCATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCTCAACTACGTGGTCACCGTCATTGGTATGTCTGATCCATCACCTCGATGCGGCATTCGCAAGCCTATGCTAACGCAAACTT--GACAGACGCTCCCGGCCACCGTGATTTCATC
'Trichoderma phyllostachydis GJS_92-123'   AGT-GGGGGCGCACCGGCA----ACCCCACCACTGCCA---------CTTTTGCCCTTCA-CTGCCGTTATCCAGTTACCATTTCAAACGCTTTTGTGTGTCATCACTTTCACAGCGATGCTAACCATTTTTCCCTCGATAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGCATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCTCAACTACGTGGTCACCGTCATTGGTATGTCTGATCCATCACCTCGATGCGGCATTCGCAAGCCTATGCTAACGCAAACTT--GACAGACGCTCCCGGCCACCGTGATTTCATC
'Trichoderma spirale CBS_120963'           AGT-GGGGTTGCTGGTGC-----ACCCCACTGCTGCCTGTCACTGC-TTTTTGTCCTTCA-CTACGACCACCT------------------------------TCA--TTTTCAACGATGCTAACCATCTTTCCCTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGATATCGCTCTGTGGAAGTTCGAGACTCCTAAGTACTATGTCACCGTCATTGGTATGTTTGACTCATTACCTTCATGCTATAATTGCAACTCGGTGCTAACGCAAACAT--TACAGACGCCCCCGGCCACCGTGATTTCATC
'Trichoderma spirale DAOM_177714'          AGTGGGGGTTGCACCAGCA----ACCCCACCGCTGCCTATCACTGCTTTTTTGTCCTTCA-CTACGACGACACAGTTAT------------------------TCA--TTTTCAGCGATGCTAATCATCTTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTGTGGAAGTTCGAGACTCCTAAGTACTATGTCACCGTCATTGGTATGTCTGATTCACTACTTCCATGCTGCAATTGCAACTCGGTGCTAACGCAAACAT--CACAGACGCCCCCGGCCACCGTGATTTCATC
'Trichoderma spirale DAOM_183974'          AGT--GGGGTGCACCAGCA----ACCCCACCGCCGCCTATCGCTGC-TTTTTGCCCTTCA-CTACGACTACACAGTTAC------------------------TCA--TTTTCAACGATGCTAACCATCTTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGATATCGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCATTTATTACCTCCATGCTACAATTGCAACTCGGTGCTAATGCAAACAT--TACAGACGCCCCCGGCCACCGTGATTTCATC
'Trichoderma spirale DAOM_229883'          AGT-GGGGTTGCTGGTGC-----ACCCCACTGCTGCCTGTCACTGC-TTTTTGTCCTTCA-CTACGACCACCT------------------------------TCA--TTTTCAACGATGCTAACCATCTTTCCCTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGATATCGCTCTGTGGAAGTTCGAGACTCCTAAGTACTATGTCACCGTCATTGGTATGTTTGACTCATTACCTTCATGCTATAATTGCAACTCGGTGCTAACGCAAACAT--TACAGACGCCCCCGGCCACCGTGATTTCATC
'Trichoderma spirale PPRI_20681'           AGT-GGGGTTGCTGGTGC-----ACCCCACTGCTGCCTGTCACTGC-TTTTTGTCCTTCA-CTACGACCACCT------------------------------TCA--TTTTCAACGATGCTAACCATCTTTCCCTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGATATCGCTCTGTGGAAGTTCGAGACTCCTAAGTACTATGTCACCGTCATTGGTATGTTTGACTCATTACCTTCATGCTATAATTGCAACTCGGTGCTAACGCAAACAT--TACAGACGCCCCCGGCCACCGTGATTTCATC
'Trichoderma strictipile DAOM_167072'      AGT--GGGGTGTACCAGCA----ACCCCACTGTCGCTCACT------GTTCTGCCCTTCA-TTCCCACTACCCAG-TGTCATTC--AACGCTTTTGTGCCT-GTCA--CTTGCAGCGATGCTAACCATGTTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCATGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATCGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTGATTCATCACATTCATGCGGCATCGGCAAGCATGTGCTAACACAAACTT--GACAGACGCTCCCGGCCATCGTGATTTCATC
'Trichoderma strictipile DAOM_172827'      AGT--GGGGTGTACCAGCA----ACCCCACTGCCGCTCACT------GTTCTGCCCTTCA-TTCCCACTACCCAG-TGTCATTC--AACGCTTTGGTGCCT-GTCA--CTTGCAGCGATGCTAACCATGTTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCATGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATCGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTGATTCATCACATTCATGCGGCATCGGCAAGCATGTGCTAACACAAACTT--GACAGACGCTCCCGGCCATCGTGATTTCATC
'Trichoderma virens DAOM_237548'           AGT-GGGGGTGCACCAGCA----ACCCCACCACTACCT--CGCTGC-TCTTTGCCCTTGTCCTATCACCTCCCAGTCCTCGTCC--AACG-ATCTGTGTCTCGATA--ATTGCAGCGATGCTAACCACCGTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCATCAC---TTTTCATCCAGCTCCCGCAAACCAGTGCTAACCAGGACCT--CACAGACGCCCCCGGCCACCGTGATTTCATC
'Trichoderma virens GJS_06_114'            AGT-GGGGGTGCACCAGCA----ACCCCGCCACTACCT--CGCTGC-TCTTTGCCCTCGT-CTACCACTTCCTAGTCCTCATTC--AACG-ATCTGTGTCTCGTTA--TTTGCAGCGATGCTAACCACCGTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCGTCC----CATTCATCCAGCTCCCGCAAACCAGTGCTAACCAGGACCT--CACAGACGCCCCCGGCCACCGTGACTTCATC
'Trichoderma virens GJS_95-78'             AGT-GGGGGTGCACCAGCA----ACCCCACCACTACCT--CGCTGC-TCTTTGCCATCGT-CTACCACTTCCCAGTCCTCATTC--AACG-ATCTGTGTCTCGTTA--TTTGCAGCGATGCTAACCACCGTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCGTCC----CATTCATCCAGCCCCCGCAAACCAGTGCTAACCAGGACCT--CACAGACGCCCCCGGCCACCGTGATTTCATC
'Trichoderma virens GLI_39'                AGT-GGGGGTGCACCAGCA----ACCCCACCACTACCT--CGCTGC-TCTTTGCCATCGT-CTACCACTTCCCAGTCCTCATTC--AACG-ATCTGTGTCTCGTTA--TTTGCAGCGATGCTAACCACCGTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCGTCC----CATTCATCCAGCCCCCGCAAACCAGTGCTAACCAGGACCT--CACAGACGCCCCCGGCCACCGTGATTTCATC
'Trichoderma virens PPRI_20676'            AGT-GGGGGTGCACCAGCA----ACCCCACCACTACCT--CGCTGC-TCTTTGCCCTTGT-CTATCACTTCCCAGTCCTCATTC--AACA-ATCTGTGCCTCGTTA--GCTGCAGCGATGCTAACCACCATTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCGTCC----CATTCATCCAGCTCCCGCAAGCCAGTGCTAACCAGGACCT--CACAGACGCCCCCGGCCACCGTGATTTCATC
;
END;