#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 17, 2024; 16:52 GMT

TreeBASE (cc) 1994-2008

Study reference:
Du plessis I.L., Druzhinina I., Yarden O., & Jacobs K. 2016. The diversity of Trichoderma
spp. in South Africa. Mycologia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19505]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=27;
        TAXLABELS
            'Trichoderma asperelloides GJS_04_116'
            'Trichoderma asperelloides GJS_99_6'
            Trichoderma_asperelloides_PPRI20679
            'Trichoderma asperellum GJS_01_294'
            'Trichoderma asperellum GJS_91_162'
            Trichoderma_asperellum_PPRI20669
            Trichoderma_eijii_8139
            Trichoderma_eijii_TUFC100002
            'Trichoderma evansii DIS_341HI'
            'Trichoderma evansii Dis_380a'
            'Trichoderma flaviconidium GJS_99_49'
            Trichoderma_hamatum_DAOM167057
            'Trichoderma hamatum GJS_04_203'
            Trichoderma_hamatum_PPRI20673
            'Trichoderma lieckfeldtiae GJS04_196'
            'Trichoderma lieckfeldtiae GJS_0501'
            'Trichoderma neorufum GJS _96_135'
            'Trichoderma neorufum GJS_96_132'
            'Trichoderma paucisporum GJS_01_13'
            'Trichoderma paucisporum GJS_0369'
            'Trichoderma pezizoides GJS01_257'
            'Trichoderma pubescens  DAOM_229987'
            'Trichoderma pubescens DAOM_166162'
            'Trichoderma strigosum DAOM_166121'
            'Trichoderma theobromicola Dis_376f'
            'Trichoderma theobromicola Dis_85f'
            'Trichoderma yunnanense CBS _21219'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M37271]

	TITLE 'Trichoderma hamatum clade (known spp) Supp. Fig. 5';
	LINK TAXA = Taxa;
	DIMENSIONS NCHAR=344;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340    ]
[                                                 .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .    ]
'Trichoderma asperelloides GJS_04_116'   TCTCGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTTGACGGCAACCCCACTATCGCCACTGTACCTCTTCCATCATCCACCACATGCTATTTGTTCAATCGCATCGTCA---TATCTCTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACACTT--CAGTCGACATTGCAAGATCGTCATTCTAAC
'Trichoderma asperelloides GJS_99_6'     TCTCGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTTGACGGCAACCCCACTATCGCCACTGTACCTCTTCCATCATCCACCACATGCT-TTTGTTCAATCGCATCGTCA---TATCTCTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACACTT--CAGTCGACATTGCAAGATCGTCATTCTAAC
Trichoderma_asperelloides_PPRI20679      TCTCGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTTGACGGCAACCCCACTATCGCCACTGTACCTCTTCCATCATCCACCACATGCT-TTTGTTCAATCGCATCGTCA---TATCTCTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACACTT--CAGTCGACATTGCAAGATCGTCATTCTAAC
'Trichoderma asperellum GJS_01_294'      TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAAATTTGGCAGCAACCCCGCTATCGCCACTGCACCTCTTCCATCACCCACCACATGCTATTTGCTCAATCGCGTCGTC-----TTTTTTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACTCTTCTCTATCGACATTCCAAGTCCGCCATTCTAAC
'Trichoderma asperellum GJS_91_162'      TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAAATTTGGCAGCAACCCCGCTATCGCCACTGCACCTCTTCCATCACCCACCACATGCTATTTGCTCAATCGCGTCGTC-----TTTTTTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACTCTTCTCTATCGACATTCCAAGTCCGCCATTCTAAC
Trichoderma_asperellum_PPRI20669         TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAAATTTGGCAGCAACCCCGCTATCGCCACTGCACCTCTTCCATCACCCACCACATGCTATTTGCTCAATCGCGTCGTC-----TTTTTTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACTCTTCTCTATCGACATTCCAAGTCCGCCATTCTAAC
Trichoderma_eijii_8139                   TCTTGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAAATTTGGCAGCAACCCCGCTATCGCCGCTGCCCCTCGTCCATCGCCCAACACACTCAACTTCAAATCTC--------TAGAGTTATTTAATTCATTTTATTAATCATACTCGACTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCCAC-TCGTCGATACTTCAAGGCCATCATTCTAAC
Trichoderma_eijii_TUFC100002             TCTTGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAAATTTGGCAGCAACCCCGCTATCGCCGCTGCCCCTCGTCCATCGCCCAACACACTCAACTTCAAATCTC--------TAGAGTTATTTAATTCATTTTATTAATCATACTCGACTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCCAC-TCGTCGATACTTCAAGGCCATCAT??????
'Trichoderma evansii DIS_341HI'          TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAAATTTGGCAGCAACCCCGCTATCGTCACTGTCCCT---CCATCACCCGACACATTCTACTTGTCAATT---------AATTTGATTTTGGTTCATTGTACTAATCATCTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGAC-TAGTCGATATTTCAAGACCATCATTCTAAC
'Trichoderma evansii Dis_380a'           TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAAATTTGGCAGCAACCCCGCTATCGTCACTGTCCCT---CCATCACCCGACACATTCTACTTGTCAATT---------AATTTGATTTTGGTTCATTGTACTAATCATCTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGAC-TAGTCGATATTTCAAGACCATCATTCTAAC
'Trichoderma flaviconidium GJS_99_49'    TCTGGCTGCCTTGTTTGGTTTTTAGTGGGG-GCCAATTTTGGCAGCAACCCCGCTATCGCCACTGGCCCTCGTCCATCGCCCAACACACTCTCGAG----------------TTGCTCTTTTGGGTTCATGGTGCTAATCATACTTCGATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTTGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGAC-TAGTCGATATTCCAACATCATCTCGCTAAC
Trichoderma_hamatum_DAOM167057           TCTGGCTGCCTTGGTTGGTTTTTAGTGGGGTGCCAAATTTGGCAGTGACCCCGCCATCGCCACTGTTCCTCATGCACTACCCAACACATGCTACGT----------------ATCAACTGCTTGGTTCATTGTGCTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGAC-TGGTCACTATCCCAACATCATCATGCTAAC
'Trichoderma hamatum GJS_04_203'         TCTGGCTGCCTTGGTTGGTTTTTAGTGGGGTGCCAAATTTGGCAGTGACCCCGCCATCGCCACTGTCCCTCATGCAGTACCCAACATATTCTACA-----------------GTCAACGTCTTGGTTCATTGTGCTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGAC-TGTTCACTATCCCAACATCATCATGCTAAC
Trichoderma_hamatum_PPRI20673            TCTGGCTGCCTTGGTTGGTTTTTAGTGGGGTGCCAAATTTGGCAGTGACCCCGCCATCGCCACTGTCCCTCACGCATTACCCAACACAAGCTACTT----------------ATCAACTGCTTGGTTCATTGTGCTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGAC-TGTTCACTATCCCAACATCATCATGCTAAC
'Trichoderma lieckfeldtiae GJS04_196'    TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATGTTGGCAGCAACCCCGCTATTGCCACCGTCGCT---CCATCGCCCAGCATATTCCACTTGCTCAATCGCATCGTCAATTTCTTTTCGGTTCATTGTGCTGATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGCGGTCCTACTTGGTCGATATTTCGAGATTGTCATTCTAAC
'Trichoderma lieckfeldtiae GJS_0501'     TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATGTTGGCAGCAACCCCGCTATTGCCACCGTCGCT---CCATCGCCCAGCATATTCCACTTGCTCAATCGCATCGTCAATTTCTTTTCGGTTCATTGTGCTGATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGCGGTCCTACTTGGTCGATATTTCGAGATTGTCATTCTAAC
'Trichoderma neorufum GJS _96_135'       TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGTTTCATTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCATCG--CAACACAATTTGTCTCCTCCATTGCACCGTCAAATGCTTTGTGATTCATTGGGCTGACCAGGTATTCAATTATAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCTGTTCTTCTCAGACCGCGTCTGAAGATGGCCATTCTAAC
'Trichoderma neorufum GJS_96_132'        TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGTTTCATTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCATCG--CAACACAATTTGT---CTCCATTGCACCGTCAAATGCTTTGTGATTCATTGTGCTGACCAGGTATTCAATTATAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCTGTTCTTCTCAGACCGCGTCTGAAGATGGCCATTCTAAC
'Trichoderma paucisporum GJS_01_13'      TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTCTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACACATTTTACCTGCTCAGTCGTATCGTCAATTTCTCTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCGGTCATCGTTACTTGACATGTCAAGATCATCATTCTAAC
'Trichoderma paucisporum GJS_0369'       TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTCTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACACATTTTACCTGCTCAGTCGTATCGTCAATTTCTCTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCGGTCATCGTTACTTGACATGTCAAGATCATCATTCTAAC
'Trichoderma pezizoides GJS01_257'       TCTTGCTGCCTTGTTTGGTTTTTAGTGGGGTATCAAGTTTGGCAGCAACCCCGCTATCGCCACTGCCCCTCGTCCATCGCCCAACACACTCTACTTCGAATCT---------TTGATTTTTGTAATTCATTTTATTAATCATACTCGACTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTAGCCC-TCGTCGATACCTCG---CCATCATTCTAAC
'Trichoderma pubescens  DAOM_229987'     TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGCCAAATTTGGCAGCAACCCCGCTATTGCCACTGT--CTCACACATTGCCCAACATATTTTACTTCAATC-----------AATTTCTGTTTGGTTCATTGTACTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTATTATGTCACCGTCATTGGTATGTTTTCAGTTCGACTTCGGTAATATTCCAACATCATCATTCTAAC
'Trichoderma pubescens DAOM_166162'      TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGCCAAATTTGGCAGCAACCCCGCTATTGCCACTGT--CTCACACATTGCCCAACATATTTTACTTCAATC-----------AATTTCTGTTTGGTTCATTGTACTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTTCGACTTCGGTAATA-TCCAACATCATCATTCTAAC
'Trichoderma strigosum DAOM_166121'      TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGCCAGCTTGGCAAGCAACCCCGCTATCGCCACTGTAGCTCGTCCATCGCCCAACACATTCTACTC-TACCATCGCATCGTCCGAAATCTCTTGATTCATTATGCTGATCATCTTTCAATCAATAGGAAGCCGCCGAACTCGGAAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTTAGTTTCC--TCATTGACATCTCGAAATCATCATTCTAAC
'Trichoderma theobromicola Dis_376f'     TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCATTTTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACAGATTTTACTTGCTCAGTCGTATCGTCAATTTCTTTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAGGTTTTCAGTCCTCGTTACTTGACATGTCAAAATCATCAATCTAAC
'Trichoderma theobromicola Dis_85f'      TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTAATTTTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACAGATTTTACTTGCTCAGTCGTATCGTCAATTTCTTTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAGGTTTTCAGTCCTCGTTACTTGACATGTCAAAATCATCAATCTAAC
'Trichoderma yunnanense CBS _21219'      TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTTGGCAGCAACCCCGCTATCGCCACTGCACCTCTTCTATCACCCACCACATGCTATTTGCTCAATCGCATCGTCATCTCTATTTTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTAGGCTCTTCTCAGTCGACATCGCAAGTCCGCCATTCTAAC
;
END;