#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 11, 2024; 23:17 GMT

TreeBASE (cc) 1994-2008

Study reference:
Donadío S., Giussani L., Kellogg E., Zuloaga F., & Morrone O. 2008. A preliminary
molecular phylogeny of Pennisetum and Cenchrus (Poaceae-Paniceae) based on the
trnL-F, rpl16 chloroplast markers. Taxon, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S2136]

BEGIN TAXA;
        TITLE  Optimization_Analysis;
        DIMENSIONS NTAX=41;
        TAXLABELS
            Cenchrus_brownii
            Cenchrus_ciliaris
            Cenchrus_echinatus
            Cenchrus_incertus
            Cenchrus_myosuroides
            Cenchrus_pilosus
            Cenchrus_setigerus
            Chasmanthium_latifolium
            Ixophorus_unisetus
            Panicum_repens
            Paspalidium_geminatum
            Pennisetum_alopecuroides
            Pennisetum_chilense
            Pennisetum_clandestinum
            Pennisetum_flaccidum
            Pennisetum_frutescens
            Pennisetum_glaucum
            Pennisetum_lanatum
            Pennisetum_latifolium
            Pennisetum_macrourum
            Pennisetum_montanum_Morrone_4931
            Pennisetum_montanum_Morrone_sn
            Pennisetum_nervosum
            Pennisetum_polystachion
            Pennisetum_purpureum_Morrone_4220
            Pennisetum_purpureum_Morrone_4473
            Pennisetum_ramosum
            Pennisetum_setaceum
            Pennisetum_sieberianum
            Pennisetum_squamulatum
            Pennisetum_tristachyon
            Pennisetum_unisetum
            Pennisetum_villosum_Doust_1500
            Pennisetum_villosum_PI_304750
            Pseudoraphis_paradoxa
            Sacciolepis_vilvoides
            Setaria_lachnea
            Setaria_sulcata
            Stenotaphrum_secundatum
            Urochloa_panicoides
            Zea_mays
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3801]

	TITLE 'Non molec + PI coded indels for optimization';
	LINK TAXA = Optimization_Analysis;
	DIMENSIONS NCHAR=46;
	FORMAT DATATYPE=Standard SYMBOLS= "0 1 2 3 4 5 6" MISSING=? GAP= -;

MATRIX
[                                             10        20        30        40         ]
[                                              .         .         .         .         ]
Cenchrus_brownii                      261101201110010010011101?001110100011100???11?
Cenchrus_ciliaris                     {01}21101101100010011011101?00111010001110000011?
Cenchrus_echinatus                    261101201110010010011101?00111010001110010?11?
Cenchrus_incertus                     261101201110011010011101?001110100011?1010?11?
Cenchrus_myosuroides                  221111100110011010011101?001110100011?1010?11?
Cenchrus_pilosus                      261101201100010010011101?00111010001110010?11?
Cenchrus_setigerus                    {01}21101101100010011011101?00111????????????????
Chasmanthium_latifolium               2000?0?????0?1?0000100?0?010000?0011110????000
Ixophorus_unisetus                    22101100???001?000011101?00111010011110010?11?
Panicum_repens                        0200?0?????011?0000010????????0100011100???101
Paspalidium_geminatum                 22101100??0001?000011101?00111??00011100???11?
Pennisetum_alopecuroides              121111000000010000011101?00111010001110010?11?
Pennisetum_chilense                   2?1111000000010000011101?1?111010001110010?11?
Pennisetum_clandestinum               0211{01}1000000010100011101?00111110001110010?11?
Pennisetum_flaccidum                  121101000000010010011101?00111???0011100???11?
Pennisetum_frutescens                 2?1111000000010010011101?00111010001110010?11?
Pennisetum_glaucum                    141101000000000000011101?00111010001110100011?
Pennisetum_lanatum                    12110101??0011?000011100?00111010001110010?11?
Pennisetum_latifolium                 221111000000010000011101?1?111010000110010?11?
Pennisetum_macrourum                  021111000000010100011101?00111110001110010?11?
Pennisetum_montanum_Morrone_4931      23111100??0001?000011101?1?11101?1001??????11?
Pennisetum_montanum_Morrone_sn        23111100??0001?000011101?1?111010100110010?11?
Pennisetum_nervosum                   221111000000010000011101?0011?010001110100111?
Pennisetum_polystachion               021101000000110010011101?00???0110011100???11?
Pennisetum_purpureum_Morrone_4220     041101000000000000011101?00111010001110100111?
Pennisetum_purpureum_Morrone_4473     041101000000000011011101?00111??00011100????1?
Pennisetum_ramosum                    051111101100010010011101?00111010000110010?11?
Pennisetum_setaceum                   021101000000010010011101?00111010001110010?11?
Pennisetum_sieberianum                1?1101000000000000011101?00111010001110100011?
Pennisetum_squamulatum                0411010000010100000111?1?001110100011101???11?
Pennisetum_tristachyon                2?1111000000010000011101?1?111010001110010?11?
Pennisetum_unisetum                   0?111100??0001?0000111???00111010001?10010?11?
Pennisetum_villosum_Doust_1500        021101000000010110111100100111010011110010?11?
Pennisetum_villosum_PI_304750         021101000000010110111100100111??00111100???11?
Pseudoraphis_paradoxa                 12111100??0011?000011100000111010001100010?11?
Sacciolepis_vilvoides                 2200?0?????011?000011011?010000000110000???001
Setaria_lachnea                       22101100??0001?000011101?00111010001110010?11?
Setaria_sulcata                       02101100??0001?000011101?00111010011010??1?11?
Stenotaphrum_secundatum               22101100??0001?000011101?00111011001110010?11?
Urochloa_panicoides                   0200?0?????001?000011010001110?000011100?1?11?
Zea_mays                              2100?0?????001?010000011?010000100011??010?100
;
END;