#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 22, 2024; 3:28 GMT

TreeBASE (cc) 1994-2008

Study reference:
Mcgowen M., Clark C., & Gatesy J. 2008. The vestigial olfactory receptor subgenome
of odontocete whales: phylogenetic congruence between gene-tree reconciliation
and supermatrix methods. Systematic Biology, 57(4): 574-590.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S2138]

BEGIN TAXA;
        TITLE  TaxonLabelSet13867;
        DIMENSIONS NTAX=9;
        TAXLABELS
            Bos_taurus
            Delphinus_delphis
            Eubalaena_japonica
            Orcinus_orca
            Phocoena_phocoena
            Physeter_macrocephalus
            Pseudorca_crassidens
            Stenella_coeruleoalba
            Steno_bredanensis
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3803]

	TITLE 'Part D- Gaps';
	LINK TAXA = TaxonLabelSet13867;
	DIMENSIONS NCHAR=93;
	FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -;

MATRIX
[                                  10        20        30        40        50        60        70        80        90   ]
[                                   .         .         .         .         .         .         .         .         .   ]
Bos_taurus                 1011011110000010000000110010001101111000000100100000001????00000010100010001010??1101???1?100
Delphinus_delphis          0110011001111101010010000000110010001101111101011?010000100010001?????010010010100001??100110
Eubalaena_japonica         01100010001011010000100000001000100001???001001???0000001001??????????????1?110100001?1001110
Orcinus_orca               0110011001111101010010000001110010001101111100011?100000100011???00010011111010000001??100110
Phocoena_phocoena          01100110011011010010100000001100100011???111001?1?0001000000??00110000010?1100010000000000110
Physeter_macrocephalus     01001000001011011?01110011001000100011???010001?1?0010011010?????11101100?11001?1001011000011
Pseudorca_crassidens       0110011001111101010010000000110010001111111111011101000010001011110000010?11010100001??100110
Stenella_coeruleoalba      011001100111110101001000000011001000110111110??01101000011001000110000010?10010100001??100110
Steno_bredanensis          0110011001111101010010000000110010001101111101011101000010001000110000???010010100001??100110
;
END;

BEGIN SETS;
	CHARSET gaps (CHARACTERS = 'Part D- Gaps') =  1-93;
END;