#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 21, 2024; 19:30 GMT TreeBASE (cc) 1994-2008 Study reference: Molina J., & Struwe L. 2008. Utility of secondary structure in phylogenetic reconstructions using nrDNA ITS sequences - an example from Potalieae (Gentianaceae: Asteridae). Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S2174] BEGIN TAXA; TITLE Bayesian_Manual_Alignment; DIMENSIONS NTAX=70; TAXLABELS Anthocleista_amplexicaulis Anthocleista_grandiflora Anthocleista_scandens Anthocleista_schweinfurthii Anthocleista_vogelii Bisgoeppertia_scandens Chelonanthus_purpurascens Coutoubea_spicata Crawfurdia_thibetica Enicostema_axillare Enicostema_verticillatum_A Enicostema_verticillatum_B Fagraea_berteroana Fagraea_ceilanica Fagraea_elliptica Fagraea_fragrans_A Fagraea_fragrans_B Fagraea_gracilis Fagraea_macroscypha Fagraea_racemosa_A Fagraea_racemosa_B Fagraea_salticola Gentiana_alpina Halenia_elliptica Lisianthius_acuminatus Lisianthius_adamsii Lisianthius_auratus Lisianthius_axillaris Lisianthius_brevidentatus_A Lisianthius_brevidentatus_B Lisianthius_capitatus Lisianthius_cordifolius Lisianthius_cuspidatus_A Lisianthius_cuspidatus_B Lisianthius_domingensis Lisianthius_exsertus Lisianthius_glandulosus Lisianthius_jefensis Lisianthius_laxiflorus Lisianthius_longifolius Lisianthius_nigrescens_A Lisianthius_nigrescens_B Lisianthius_nigrescens_C Lisianthius_oreopolus Lisianthius_quichensis Lisianthius_saponarioides_A Lisianthius_saponarioides_B Lisianthius_seemannii_A Lisianthius_seemannii_B Lisianthius_seemannii_C Lisianthius_skinneri Lisianthius_troyanus Lisianthius_umbellatus Lisianthius_viscidiflorus Macrocarpaea_glabra Neurotheca_loeselioides Potalia_amara_A Potalia_amara_B Potalia_elegans Potalia_maguireorum Potalia_resinifera_A Potalia_resinifera_B Potalia_resinifera_C Prepusa_montana_A Prepusa_montana_B Swertia_tetraptera Symbolanthus_calygonus Symphyllophyton_caprifolioides Tachia_grandiflora Urogentias_ulugurensis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M3852] TITLE ITS_alignment_based_on_secondary_structures; LINK TAXA = Bayesian_Manual_Alignment; DIMENSIONS NCHAR=679; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Anthocleista_amplexicaulis -------------------------------------TCGAATCCTGCGAAGCAGACGACCCG-CGAACTT--GTT-TAACCCAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGGCG-GCACGGCG-TCGATC--GGTCGCTCGTCGGGCGAAAAA-CTAAA-CC-GGGGCGTGGAAAGGCGCCAAGGAA---AACGAGA--AAAGGAT-------TCTCGATGCCC--------CGTACGCGGTGCGCGCGGG-AGGAGCACGGGCG-CCT-GTA-GAAACCGATACGACTCTCGGCAACGGATATCTCGGCTCCCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCG-GTCGCCCCACCC-AACCCC---AAAATGGCTTCCCGTGCCCC------TGGCGCGGCTGGCCTAAATACGAGTCTCTTGTGACGGATGCGACGA-CAA---GTGGTGGTTGAATGCCTCAACTCGGGTGC-TGTCGC--GTCAGGAGAGGAGA--CTG-CCCCGACCC-TGCA-GCATGTGTCGCCACGACG---CATGCC-ACGACCGC Anthocleista_grandiflora -------------------------------------TCGAATCCTGCGAAGCAGACGACCCG-CGAACTT--GTT-TAACCCAC----GGGCGC-CGGGA--CG-TTGGGAA---CCGCG-GACCGGCG-GCA-GGCG-TC-A-C--GGTC-CTCGCCGGGC-AAAAA-CTAAA-CC-GGGGCGC-GAAA-GCCCC-AGGAA---AACGAGA--AAAGGAT-------TCCCGACGCCC--------CGTACGCGGGGCGCGCGGG-GGGAACACGGGCC-CCT-GTA-GAAACTGGTACGACTGTCGGCAACGGATATCTCGGCTCCCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAACTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCCCCCCCCCC-AACCCC---AAGATGGCTTCCCGTGCCCC------TGGCGCGGCTGGCCTAAATACGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGAATGCCTCAACTCGGGCGC-TGTCGC--GTCGGGAGAGGAGA--CTG-CCCCGACCC-TGTAAGCGTGCGTCGCCGTGACG---CGTGCC-ACGACCGC Anthocleista_scandens -------------------------------------TCGAATCCTGCGAAGCGGACGACCCG-CGAACCT--GTT-TAACCCAC----GGGCGC-CGGGA--CG-TGGGGAA---CCGCG-GACCGGCG-GCACGGCG-TCGATC--GGTCGCTCGTCGGGCGAGAAA-CCAAA-CC-GGGGCGCGGAAAGGCGCCAAGGAA---AACGAGA--AAAGGAC-------TCCCGACGCCC--------CGTACGCGGTGCGCGCGGG-GGGAGCACGGGCG-CCC-GAA-GAAACCGATACGACTCTCGGCAACGGATATCTCGGCTCCCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCCAAACCCC---AAGATGGCTTCCCGTGCCCC------TGGCGCGGCTG-CCTAAACACGAGTCCCTTGTGACGGACGCGACGG-CAA---GTGGTGGTTGAATGCCTCGACTCGGGTGC-CGTCGC--GTCGGGAGGGGAGA--CTG-CCCCGACCC-TGTAAGCGTGCGCCGACGTGACG---CATGCC-ACGACCGC Anthocleista_schweinfurthii -------------------------------------TCGA-TCCTGCGAAGCAGACGACCCG-CGAACTT--GTT-TAACCCAC----GGGCGC-CGGGA--CG-TGGGGAA---CCGCG-GACCGGCG-GCACGGCG-TCGATC--GGTCGCTCGCCGGGCGAGAAA-CTAAA-CC-GGGGCGCGGAAAGGCGCCAAGGAA---AACGAGA--AAAGGAT-------TCCCGACGCCC--------CGTACGCGGGGCGCGCGGG-GGGAGCACGGGCG-CCT-GT--GAAACTGATACGACTCTCGGCAACGGATATCTCGGCTCCCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Anthocleista_vogelii -------------------------------------TCGAATCCTGCGAAGCAGACGACCCG-TGAACTT--GTT-TAACCCAC----GGGCGT-CGGGA--CG-TGGGGAA---TCGCT-GACCGGCA-GCA-GGTG-TCGATC--GGTCGCTCGTCGGGCAAAAAA-CTAAA-CC-GGGGCGTGGAAAAGCGCCAAGGAC---AATGAGA--AAAGGAT-------TCTCGGTGCCC--------CTTA-GCGGTGCATGCGGG-AGGAGCACGGGCG-CCT-GTA-GAAACTAATACGACTCTCGGCAACAGATATCTCGGCTCCCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAT-GCAAGTTGCGCCGGAAGCCATCCGGCC-AGGGCATGTCTGCCTGGGCATCACACATCGTGTCCACCCCCC--AACCCC---AAAATGGCTTCCCGTGCCCC------TTGCGCGGTTGGCCTAAATTTGAGTCCCTTGCGACGGATGCAACGA-CAA---GTGGTGGTTGAATGCCTCAACTCGGGTGC-TGTCA----TCAGGAGAGGAGA--CTG-CCCCGACCC-TGTA-GCATGTGGTGCCATGATG---CATGCC-ACGACCGT Bisgoeppertia_scandens -------------------------------------TCGAATCCTGCGAAGCAGACGACCCG-AGAACAT--GTT-TAACACAC----GGGCAT-CGGAA--CG-TGGGTAA---CCACG-GGCCGCAT-GCACGTCA-TCGATCGCGGTCGATCGTCGGGCTGAAAT-CCAAA-CT-CGGGCGCAGCGAAGCGCCAAGGAATTTAACCGAAT-CAGGGAT-------TCTTGACGCCC--------CGTACGCGGTGTGCGCTGG-AGGAGCAT-GACG---C-CTCTAAACCGAAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATTGTGCCGCCCCCC---AACCTT---AGGATGGCTTCCCGTGCCCC------TGGCGCGGCTGGCCTAAATGCGAGTTCCTCACGACGGGCGCGACGA-CAA---GTGGTGGTTGATTGGCTCAACTCGGGAGC-TTTGGC--ACCGTACGAGGATA--CTG-CCC-GACCC-TACAC-CATGCGTCGTCACGATG---CGTGCCCAAGGCCGC Chelonanthus_purpurascens -------------------------------------TCGAATCCTACGAAACAGACCACCGG-AGAACAT--GTT-AAACTCAC----GGGTGG-CGGGA--GG-AGGGAGA---CCCCA-GACCGACA-GCATGACG-TCTGCC--GGTTGCTCGTTGTGCGTAAAA-CTAA--CC-CGGGCGCAGAAAAGCGCCAAGGAA---AACTATG--AAAGGAT-------TCTCGTCGCCT---------GTACGCGGTGTGCACGGG-AGGATCATGTGCC-TCT-ATA-GAAACAAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCAAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTC---ATTAT---AAACTGGCTTCCCGTGCTC-------GCGTGCGGCTGGCCTAAATACGAGTCCTTTACGATGGACGCGGTGA-CAA---GTGGTGGTTGATTACCTCAACTAGAGTGC-TGTCAC--TTCAATTGAGGAGA--CTC-CTTCGACCC-TGAT-GCATGCATCGTCATGATG---ACTGCC-ACGACCGC Coutoubea_spicata -------------------------------------TCGAATCCTGCGAAGCAGACGACCAG-CGAACGT--GTT-TTTACCGCAC---GGCGT-ACGTG--CG-TGGGGAA---CCACGCGAC-GGCG-GCGCGACG-TCGGCA----CCGGCCGTCGCGCGGAACA-CCAAAACC-CGGGCGC-GAAAAGCGCCAAGGAA---GACGTAAA-TGAGGAC-----C-TCTCGACGGCC--------CGTGCGCGGCGTGCGCGGG-AGGGCGTTGGGCG-CCT-GTG-GAAACAAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGA-ACTTGGTGTGAA-TGC--AAT-CC-GTGAACCAT--GAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCCAAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCACCAATCCC---AAACTGGCCTCCCGTGCCC-------CTGCGCGGCTGGCCTAAATTCGAGTCCCACGTGATGGACGCGACGA-CTT---GTGGTGGTTGACTGCATCAACTCGAGCGCTTGTCGT--GTCGGACGAGGTGA--CTC-TCAGGACCC-TATG-GCACGTGTCGTCACGACC---CGTGCCCACGACCGC Crawfurdia_thibetica -------------------------------------TCGATTGGTGCGAAGCAGACGACCCG-AGAACAT--GTT-TAACTCAC----GGGCATTTGGGA--CG-TGGGAAA---CCATG-GACTGATG-GCAAGGCG-ACGGCC--GGTCACAAGTCGTGCT-AACAT-CAAA-CCCCGGGCGCATTAA-GTGCCAAGGAA---AACGAAA--AA-GGAT-------TACC-ACATTC--------CGTACGCGGTGTGTTTTGGTAGGATCATGGGCA-CCT-AAA-GAAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCTGTCGCCCCC----AAACCC---ATATTGGCTTCCCGTACTT-------CGGTGCGGTTGGCCTAAATGCAAGTCTCTTCTGATGGCGACGACGA-CAA---GTGGTGGTTGATTGCCTCAACTAAGGTGC-TGTCGT--GTCGAACGAAGGGA--CTC-CGTAGACCC-TGAT-GCATGCGTCGTCATGATG---CCTGCT-ACGACTGC Enicostema_axillare -------------------------------------TCGAATCCTGCGAAGCAGACGACCCG-CGAACTT--GTT-TAACCCAC----GG-CAT-CGGGA--CG-TGCGAAA---ACACG-GACCGGCG-GCACGGCG-TCGACC--GGTCG-CCGTTGGGCGAGAAAACTAAA-CC-CGGGCGCGGAAA-GCGCCAAGGAA---AATGAAATAAAAGGAT-------TCTCGACGCCC--------CGTACGCGGTGTGTGTTGG-AGGATCACGGTCG-TCT-CTA-GAAATTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Enicostema_verticillatum_A -------------------------------------T-GAATC-TG-GAAGC-ACAGACCCG-CGAACTT--GTT-TAACCCAC----GGGCAT-CGGGA--CGAGTGAAAA----CACG-GACCGGCG-GCACGACG-TCGGCT--GGTCGGTCGTTGGGCGAGAAAACTAAA-CC-CGGGCGCGGAAA-GCGCCAAGGAA---AATGAAACAAAAGGGT-------TCTCGATGCCC--------CGTACGCGGTGTGCGTTGG-AGGATCATGGTCG-TCT-CTG-GAAACTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCTCCC--ACCCAC---AAAATGGCTTCCCGTGCCCC------TGGTGCGGCTGGCCTAAATGCGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATTGTCTCAACTCGAGTGC-TGTCGT--GTCGAGAGAGTGGA--CTG-CCT--ACCC-TGGA-GCATGTGTTGTCATAACA---CGTGCC-ACGACCGC Enicostema_verticillatum_B -------------------------------------TCGAATC-TGCGAAGCAGACGACCCG-CGAACTT--GTT-TAACCCAC----GGGCAT-CGGGA--CGAGTGAAAA----CACG-GACCGGCG-GCACGACG-TCGGCT--GGTCGGTCGTTGGGCGAGAAAACTAAA-CC-CGGGCGCGGAAA-GCGCCAAGGAA---AATGAAACAAAAGGGT-------TCTCGATGCCC--------CGTACGCGGTGTGCGTTGG-AGGATCATGGTCG-TCT-CTG-GAAACTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCTCCC--ACCCAC---AAAATGGCTTCCCGTGCCCC------TGGTGCGGCTGGCCTAAATGCGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATTGTCTCAACTCGAGTGC-TGTCGT--GTCGAGAGAGTGGA--CTG-CCTCGACCC-TGGA-GCATGTGTTGTCATGACA---CGTGCC-ACGACCGC Fagraea_berteroana ---------------------------------------GAATC{AC}TGCGAAGCAGACGACCCG-TGAACTT--GTT-TAACCCAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGGCG-GCACGGCG-TCGGCC--GGTCGCTCGTCGGGCGAGAAA-CTAAA-CC-CGGGCGCAGAAAAGCGCCAAGGAA---AACGAGA--AAAGGAT-------TCTCGACGCCC--------CGTACGCGGTGTGCGCGAG-GGGAGCACGGGCA-CCT-CTACGAAACTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCC{AG}GCCGAGGGCACGTCTGCCTGGGC{AG}TCACGCATCGCGTCGCCCCCCC--AACCCC---AAAATGGCTTCCTGTGCCCC------TGGC{AG}{CT}GGCTGGCCTAAATGCGAGTCCCTTGCGACGGACGCGA{CT}GA-CAA---GTGGTGGTTGATTGTCTCAACTCGAGTGC-TGTCGC--GTCGAAAGAGGAGA--CTC-CCCCGACCC-TGCA-GCATGTGTCGCCATGACG---CGTGTC-ACGA---- Fagraea_ceilanica ----------------------------------------AATC-TGCGAAGCAGACGAC-CG-TGAACTT--GTT-TAACCCAC----GGGCGT-CAGGA--CG-TG-GGAA---CCGCG-GACCGGCG-GCACGGCG-TCCGCC--GGTCGCTCGTCGGGCGAGAAA-CTAAA-CC-CGGGCGCAGAAAAGCGCCAAGGAA---AACGAGA--AAAGGAT-------TCTCGACGCCC--------CGTACGCGGTGTGCACGAG-GGGAGCACAGGCA-CCT-GTACAAAACTA-AACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCT--AACCCC---AAAATGGCTTCCCGTGCCCC------TGGTGCGGCTGGCCTAAATGCGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATTGTCTCAACTCGAGT-C-TGTCGC--GTTGAAAGAGGAGACTCTC-CCCCGACCC-TACA-GCATGTGTCGCCATGACG---CATGTC-ACGACCGC Fagraea_elliptica -------------------------------------TCGAATCCTGTGAAGCAGACGACCCG-TGAACTT--GTT-TAACCCAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGGCG-GCACGGCG-TCGGCC--GGTCGCTCGTCGGGCGAGAAA-CTAAA-CC-CGGGCGCGGAAAAGCGCCAAGGAA---AACGAGA--AAAGGAT-------TCTCGACGCCC--------CGTACGCGGTGTGCGCGAG-AGGAGCACAGGCA-CCT-GTACAAAACTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAATTCCCGTGAACCATTCGA-TC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCC---AACCCC---AAAATGGCTTCCCGTGCCCC------TGGCGCGGCTGGCCTAAATGCGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATTGTCTCAACTCGAGTGC-TGTCGC--GTCGATAGAGGAGA--CTG-CCCCGACCC-TGCA-GCATGTGTCGCCACGACG---CGTGCC-ACGACCGC Fagraea_fragrans_A -------------------------------------TCGAATCCTGCGAAGCAGACGACCCG-CGAACTT--GTT-TCACCCAC----GGGCGT-CGGGA--AG-TGGGGAA---CTGCG-GACCGGCG-GCACGGCG-TCGGCC--GGTCGCTCGTCGTGCGAGAAA-CTAAA-CC-CGGGCGCAGAAAGGCGCCAAGGAA---AACGAGA--AAAGGAT-------TCTCGACGCCC--------CGTACGCGGTGTGCGCGAG-TGGAGCACAGGCA-CCT-GTACGAAACTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTTAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCC---AACCCC---AAAATGGCTTCCCGTGCCCC------TGGTGCGGCTGGCCTAAATGAGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATTGCCTCAACTCGAATGC-TGTCGC--GTCGAAAGAGGAGA--CTG-CCTTGACCC-TGCA-GCATGTGTCTCCATGA{AG}GA--CGTGTC-AC-AC-GC Fagraea_fragrans_B -------------------------------------TCGAATCCTGCGAAGCAGACGACCCG-CGAACTT--GTT-TCACCCAC----GGGCGT-CGGGA--AG-TGGGGAA---CTGCG-GACCGGCG-GCACGGCG-TCGGCC--GGTCGCTCGTCGTGCGAGAAA-CTAAA-CC-CGGGCGCAGAAAAGCGCCAAGGAA---AACGAGA--AAAGGAT-------TCTCGACGCCC--------CGTACGCGGTGTGCGCGAG-TGGAGCACAGGCA-CCT-GTACGAAACTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGC-GAAT-CCCGT-A-CCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCC-CCC-AACCCC---AAAATGGCTTCCCGTGCCCC------TGGTGCGGCTGGCCTAAATGAGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATTGCCTCAACTCGAATGC-TGTCGC--GTCGAAAGAGGAGA--CTGCCCTGGACCC-TGCA--CAT-------------------------------- Fagraea_gracilis -------------------------------------TCGAATCGTG-GAAGCAGACGACGCG-CGAACTT--GTT-TAACCCAC----GGGCGT-CGGGA--AG-TGGGGAA---CTGCG-GACCGGCG-GCACGGCG-TCGGCC--GGTCGCTCGTCGTGCGAGAAA-CTAAA-CC-CGGGCGCAGAAAAGCGCCAAGGAA---AACGAGA--AAAGGAT-------TCTCGACGCCC--------CGTACGCTGTGTGCGCGAG-TGGAGCACAGGCA-CCT-GTACGAAACTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCCC-AACCCC---AAAATGGCTTCCCGTGCCCC------TGGTGCGGCTGGCATAAATGAGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATTGCCTCAACTCGAATGC-TGTCGC--GTCGAAAGAGGAGA--CTG-CCCTGACCC-TGCA-GCATGTGTCGCCATGACG---CGTGCC-ACGACCGC Fagraea_macroscypha -------------------------------------TCGAATCCTGCGACGCAGACGACCCG-TGAACTT--GTT-TAACCCAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGGCG-GCACGGCG-TCGGCC--GGTCGCTCGTCGGGCGAGAAA-CTAAA-CC-CGGGCGCAGAAAAGCGCCAAGGAA---AACGAGA--AAAGGAT-------CCTCGACGCCC--------CGTACGCGGTGTGCATGAG-GGGAGCACAGGCA-CCT-GTACAAAACTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCGTCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCC--AACCCC---AAAATGGCTTCCCGTGCCCC------TGGTGCGGCTGGCCTAAATGCGAGTCCCTT-CGACGGACGCGACGA-CAA---GTGGTGGTTGATTGTCTCAACTCGAGTGC-TGTCGC--GTTGAAAGAGGAGACTCTC-CCCCGACCC-TGCA-GCATGTGTCGCCATGACG---CATGTC-ACGACCGC Fagraea_racemosa_A -------------------------------------T-GAATCCTGCGAAGCAGACGACCCG-TGAACAT--GTT-TAACCCAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGGCG-GCACGGCG-TCGGCC--GGCCGATCGTCGGGCGAGAAA-CTAAA-CC-CCGGCGCGGAAAAGCGCCAAGGAA---AACGAGA--AAAGGAT-------TCTCGACGCCC--------CGTACGCGGTGTGCGCGAG-AGGAGCACAGGCA-CCC-GTACAAA-CTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCC---AACCCC---AAAATGGCTTCCCGTGCCCC------TGGCGCGGCTGGCCTAAATGAGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATCGTCTCAACTCGGGTGC-TGTCGC--GTCGAAAGAGGAGA--CTG-CCTTGACCC-TGCA-GCATGTGTCGCAACGACG---CGTGC--ACGACCGC Fagraea_racemosa_B -------------------------------------TCGAATCCTGCGAAGCAGACGACCCG-TGAACAT--GTT-TAACCCAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGGCG-GCACGGCG-TCGGCC--GGCCGATCGTCGGGCGAGAAA-CTAAA-CC-CCGGCGCGGAAAAGCGCCAAGGAA---AACGAGA--AAAGGAT-------TCTCGACGCCC--------CGTGCGCGGTGTGCGCGAG-AGGAGCACAGGCA-CCC-GTACAAA-CTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCC---AACCCC---AAAATGGCTTCCCGTGCCCC------TGGCGCGGCTGGCCTAAATGAGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATCGTCTCAACTCGGGTGC-TGTCGC--GTCGAAAGAGGAGA--CTG-CCTTGACCC-TGCA-GCATGTGTCGCCACGACG---CGTGCC-ACGACCGC Fagraea_salticola -------------------------------------TCGA-TC-TGAGAAGCAGACGACCCG-TGAACTT--GTT-TAACCCAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGGCG-GCACGGCG-TCGGCC--GGCCGCTCGTCGGGCGAGAAA-CTAAA-CC-CGGGCGCAGAAAAGCGCCAAGGAA---AACTAGA--AAAGGAT-------TCTCGACGCCC--------CGTACGCGGTGTGCGCGAG-GGGAGCACGGGCA-CCT-GTACGAAACTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAATCCCCGTGAACCATTCGATTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCC--AACCCC---AAAATGGCTTCCCGTGCCCC------TGGCGCGGCTGGCCTAAATGCGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATTGTCTCAACTCGAGTGC-TGTCGC--GTCGAAAGAAGAGA--CTC-CCCCGACCC-TGCA-GCATGTGTCGCCATGACG---CGTGTC-ACGACCGC Gentiana_alpina -------------------------------------TCGAATCCTGCGAAGCAGACGACCCG-AGGACAT--GTT-TAAAGCAC----GGGCGTTCGGGA--CG-AGGGAAA---CCACG-GACCGATG-GCACGGCG-TCGACC--GGTCGCT{CT}GT{CT}GTGCA-AACAACCAA--CCCCGGGCGCAGAAACGCGCCAAGGAA---TACGAAA--AAAGGAT-------TCCCGTCACCC--------CGTACGCGGTGTGCACAGA-AGGACCACGGGCG-CCT-AAA-GAAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGCGTCGCCCCCT---AACACC---ATATTGGCTTCCCGTGCTC-------CGGTGCGGCTAGCCTAAATGCAAGTCCCTTACGACGGACACGACGA-CAA---GTGGTGGTTGGTTTACTCAACTAAGGTGC-TGTCGC--GTCGGATGA{AG}GAGA--CTT-ACTTGACCC-TGAT-GCATACGTCGTCACGACG---TCTGCC-ACGACCGC Halenia_elliptica -------------------------------------TCGAATCCTGCGAA{CG}-AGATGACCCG-AGAACAT--GTT-TAACGAAC----GGGCGTCCGGAA--AA-AGGGAAA---CCATG-GACCGGCG-GCGCGGCG-TCGACC--GGTCGTGCGTCATGCAC-ACAAACAA--CCCCGGGCGTAGAAAAGCGCCAAGGAA---AACAAGA--AAGGGAT-------TCTTGATGCCC--------CGTACGCGGAGTGCACGGG-AGGGCAGCAGGCA-CCT-GAA-GAATCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGCGTCGCCCC-TC--A-CCCCA--AAACTGGCTTCCCGTGCTT-------CGTCGCGGCTGGCCTAAATATGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATTTCCTCAACGAAGGTGC-TGCCGC--GTCGAGTTAGGAGA--CTC--CTTGACCC-TGAT-GCATGCGTCGTCACGATG---CTTGCT-ACGACCGC Lisianthius_acuminatus -------------------------------------TCGAATCCTGCGAAGCGGACGACCCG-GGAACAT--GTT-TAACACAC---GGGGCAT-CGGGA--CG-TGGGTAA---CCGCG-GACAGTGT-GCGCGGCA-TCGACCGCGGTCGGTCGTCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACGGAAT-CAGGGATATGTC--TCTTGACGCCC-----ACCCGTACGCGGTGTGTGCTCG-AGGAGCATCGGCG--CC-CTCTAAAACGGAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGCCACGCATCGCGTCGCCCCCAC--AGCCCT---AGGATGGCTTCCCGTGCCCCCCC---TGGCGCGGCTGGCCCAAACGCGAGCAGCTTTCGGCGGGCGCGACGA-CAA---GTGGTGGTTGACTGGCTCAACTCGAGAGC-TGTCGC--ACCGAAAGAGGGT--GCTG-CCCCGACCCTTGCAC-CACGCGTCGTCACGACG---CGTGCC-ACGGCCGC Lisianthius_adamsii -----------------------------------------------------------------------------------------------------------------------------CGTGT-GCA-GGCA-TCGATCGCGGTCGATCGTCGGGCAAAAAT-CAAAA-CC-CGGGCGCGGCGAAGCGCCAAGGAATTTAACTGAAT-CAGGCGT-------TCTTGATGCCC--------CGTACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCTAAAACAAAAACGACCCCCGGCAACGGATATC-----------ATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCC--AAACCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CAA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAGAGAGGATA--CTG-CCCCGACCC-T-CAT-CATGCGTCGTCAGGACG---TGTGCC-ATGGCCGC Lisianthius_auratus -------------------------------------TCGAATCCTGCAAAGCAGACGACCTG-GGAACAT--GTT-TAACACAC----GGGCAT-CGAGACACG-TGGGCAA---CCACG-GACCGTGT-GCACGGCA-TCGATCGCGGTCGATCGTCGGGCAAAAAT-CAAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACTGAAT-CAGGGAT-------TCTTGATGCCC--------CGTACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCTAAAACAAAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCGC--AACCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CAA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAAAGAGGATA--CTG-CCCCGACCC-T-CAT-CATGCCTCGTCACGACG---TGTGCC-ATGGCCGC Lisianthius_axillaris -------------------------------------TCGAATCCTGCGAAGCGGACGACCCG-CGAACAT--GTT-TAACACAC---GGGGCAT-CAGGA--CG-TGGGTAA---CCGCG-GACCGTGT-GCGCGGCA-TCGATCG----------TCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACGGAAT-CAGGGAC--GTC--TCTTGACGCCC-----GCCCGTACGCGGTGTGTGCTCG-AGGAGCATCGGCG--CC-CTCTAAAACGGAAACGACCCCCGGCA-CGGATATCTCGGCTCTCGCATCGATGAA-AACGTAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lisianthius_brevidentatus_A -------------------------------------TCGAATCCTGCGAAGCGGACGACCCG-GGAACATATATG-T-T-ACACAC--GGGC----------TG-TGTGT------CGC------GTGT-GCGCG-CA-TCG--CGCGGTCGATCG-CGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAACTTAACGGAAT-CTGGGAT--GTC--TCTTGAAGCCC-----ACACGTACGCGGTGTGTGCTCG-AGGAGCATCGGCG--CC-CTCTAAAACGGAAACGACCCCCGGCAACGGATATCTCGGCTCTTGCATCGATGA-GAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCAC--AGCCTT---AGGATGGCTTCCCGTGCAAACCCCCCTGGCGCGGCTGGCCCAAACGCGAGCAGCTTTCGACGGGCGCGACGA-CGA---GTGGTGGTTGACTGGCTCAACTCGAGGGC-CGTCGC--ACCGAAAGAGGAT--GCTG-CCCCGACCCCTGCAC-CATGCGTCGTCACGACG---CGTGCC-ACGGCCG- Lisianthius_brevidentatus_B -------------------------------------TCGAATCCTGCGAAGCGGACGACCCG-GGAACATATGTT-TAACACAC--GGGGGCAT-CAGGA--CG-TGGGTAA---CCGCG-GACCGTGT-GCGCGGCA-TCGATCGCGGTCGATCGTCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAACTTAACGGAAT-CTGGGAT--GTC--TCTTGAAGCCC-----ACACGTACGCGGTGTGTGCTCG-AGGAGCATCGGCG--CC-CTCTAAAACGGAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCAC--AGCCTT---AGGATGGCTTCCCGTGCAACCCCCCCTGGCGCGGCTGGCACAAACGCGAGCAGCTTTCGACGGGCGCGACGA-CGA---GTGGTGGTTGACTGGCTCAACTCGAGGGCCTGTCGC--ACCGAAAGAGGAT--GCTG-CCCCGACCCCTGCAC-CATGCGTCGTCACGACG---CGTGCC-ACGGCCGC Lisianthius_capitatus -------------------------------------TCGAATCCTGCAAAGCAGACGACCTG-GGAACAC--GTT-TAACACAC----GGGCAT-CGAGA--CG-TGGGTAA---CCACG-GACCGTGT-GCACGGCA-TCGATCGCGGTCGATCGTCGGGCAAAAAT-CAAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTGACTGAAT-CAGGGGT-------TCTTGATGCCC--------CGTACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCTAAAACAAAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCC--AAACCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CAA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAGAGAGGATA--CTG-CCCCGACCC-T-CAT-CATGCGTCGTCACGACG---TGTGCC-ATGGCCGC Lisianthius_cordifolius ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCC--AAACCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CAA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAGAGAGGATA--CTG-CCCCGACCC-T-CAC-CATGCGTCGTCACGACG---TGTGCC-ATGGCCGC Lisianthius_cuspidatus_A -------------------------------------TCGAATCCTGCGAAGCGGATGACCCG-GGAACAT--GTT-TAACACGC--GGGG-CAT-CGGGA--CG-TGGGCAA---CCGCG-GACCGTGT-GCGCGGCA-TCGATCGCGGTCGATCGTCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAACTTAACGGAAT-CAGGGAT--GTC--TCTTGACGCCC-----GCCCGTACGCGGTGCGTGCTCG-AGGAGCATCGGCG--CC-CTCTAAAACGGAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCA-CGAT-AAAAACGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Lisianthius_cuspidatus_B -------------------------------------TCGAATCCTGCGAAGCGGATGACCCG-GGAACAT--GTT-TAACACGC---GGGGCAT-CGGGA--CG-TGGGCAA---CCGCG-GACCGTGT-GCGCGGCA-TCGATCGCGGTCGATCGTCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAACTTAACGGAAT-CAGGGAT--GTC--TCTTGACGCCC-----GCCCGTACGCGGTGCGTGCTCG-AGGAGCATCGGCG--CC-CTCTAAAACGGAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCAC--AGCCCT--GAGGATGGCTTCCCGTGCCCCCCCCC-TGGCGCGGCTGGCCCAAACGCGAGCAGCTTTCGACGGGCGCGACGA-CAA---GTGGTGGTTGACCGGCTCAACTCGAGAGC-TGTCGC--ACCGAAAGAGGAT--GCTG-CCCCGACCCTTGCAC-CATGCGTCGTCAC-ACGACGCGTGCC-ACGGCCGC Lisianthius_domingensis ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--TCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCATCACGCATCGCGTCGCCCCCC--AAACCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CAA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAGAGAGGATA--CTG-CCCCGACCC-T-CAT-CATGCGTCGTCACGACG---TGTGCC-GTGGCCGC Lisianthius_exsertus -------------------------------------TCGAATCCTGCAAAGCAGACGACCTG-GGAACAT--GTT-TAACACAC----GGGCAT-CGAGA--CG-TGGGTAA---CCACG-GACCGTGT-GCACGGCA-TCGATCGCGGTCGATCGTCGGGCAAAACT-CAAAA-CT-CGGGCGCGGCGAAGCGCCAAGGGATTTAACTGAAT-CAGGGGT-------TCTTGATGCCC--------CGTACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCCAAAACAAAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCGC-AAACCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCCTTCGACGGGTGCGACGA-CAA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAGAGAGGATA--CTG-CCCCGACCC-T-CGT-CATGCGTCGTCACGACG---TGTGCC-ATGGCCGC Lisianthius_glandulosus ---------------------------------------GAATCCTGCAAAGCAGACGACCTG-GGAACAT--GTT-TAACACAC----GGGCAT-CGAGA--CG-TGGGTAA---CCACG-GACCGTGT-GCACGGCA-TCGATCGCGGTCGATCGTCGGGCAAA-AT-AAAAA-CT-CGGGCGCGGCGAAGCGCCA-GGAATCTAACTGAAT-CAGGGGT-------TCTTGATGCCC-------CCGTACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCTAA-ACAAAAACGACCCCCGG-AACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCATCACGCATCGCGTCGCCCCCCC-AAGCCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CAA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAGAGAGGATA--CTG-CCCCGACCC-T-CAT-CATGCGTCGTCACGACG---TGTGCC-ATGGCCGC Lisianthius_jefensis -------------------------------------TCGAATCCTGCAAAGCAGACGACCTG-GGAACAT--GTT-TAACACAC----GGGCAT-CGAGACACG-TGGGTAA---GCACG-GACCGTGT-GCACGGCG-TCGATCGCGGTCGATCGTCGGGCAAAAAT-CAAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACTGAAT-CAGGGAT-------TCTTGATGCCC--------CGTACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCTAAAACAAAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCC--AACCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CAAGTGGTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAAAGAGGATA--CTG-CCCCGACCC-T-CAT-CATGCCTCGTCACGACG---TGTGCC-ATGGCCGC Lisianthius_laxiflorus -------------------------------------TCGAATCCTGCAAAGCAGACGACCTG-GGAACAT--GTT-TAACACAC----GGGCAT-CGAGA--CG-TGGGTAACCACCACG-GACCGTGT-GCACGGCA-TCGATCGCGGTCGATCGTCGGGCAAAAAT-CAAAA-CT-CGGGCGCGGCGAAGCGCCAAGGACTCTAACTGAAT-CAGGGGT-------TCTTGATGCCC--------CGTACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCTAAAACAAAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCGTCAGGCTGATGGCACGTCTGCCTGGGCATCACGCATCGCGTCGCCCCCC--AAACCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTGCCTTTCGACGGGTGCGACGA-CAA---GTGGTGGTTGAGTGGCTCAACGCGTGAGC-TGTCGC--GTCGAGAGAGGATA--CTG-CCCCGACCC-T-CAT-CATGCGTCGTCACGACG---TGTGCC-ACGGCCGC Lisianthius_longifolius ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCC--AAACCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CAA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAGAGAGGATA--CTG-CCCCGACCC-T-CAT-CATGCGTCGTCACGACG---TGTGCC-ATGGCCGC Lisianthius_nigrescens_A -------------------------------------TCGAATCCTGCGAAGCGGACGACCCG-GGAACAT--GTT-TAACACGC---GGGGCGT-CGGGA--CG-TGGGTAA---CCGCG-GACCGTGTGGCGCGGCA-TCGATCGCGGTCGATCGTCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACGGAAT-CAGGGAT--GTC--TCTTGGCGCCC-----ACCCGTACGCGGTGTGTGCCCG-AGGAGCATCGGCG--CC-CTC-AAAACGGAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAAC-TAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lisianthius_nigrescens_B -------------------------------------TCGAATCCTGCGAAGCGGACGACCCG-GGAACAT--GTT-TAACACGC---GGGGCGT-CGGGA--CG-TGGGTAA---CCGCG-GACCGTGTGGCGCGGCA-TCGATCGCGGTCGATCGTCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACGGAAT-CAGGGAT--GTC--TCTTGGCGCCC-----ACCCGTACGCGGTGTGTGCCCG-AGGAGCATCGGCG--CC-CTCTAAAACGGAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGCCACGCATCGCGTCGCCCCCAC--AGCCTT---AGGATGGCTTCCCGTGCCCCCCC---TGGCGCGGCTGGCCCAAACGCGAGCAGCCCTCGGCGGGCG-GACGA-CAA----TGGTGGTTGA-TGGCTCAACTCGAGAGC-TGT-GC--GCCGAAAGAGGATATGCTG-CCCCGACCCTTGCAC-CATGCGTCGTCACGACGACGCGTGCC-ACGGCCGC Lisianthius_nigrescens_C -------------------------------------TCGAATCCTGCGAAGCGGACGACCCG-GGAACAT--GTT-TAACACGC---GGGGCGT-CGGGA--CG-TGGGTAA---CCGCG-GACCGTGTGGCGCGGCA-TCGATCGCGGTCGATCGTCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACGGAAT-CAGGGAT--GTC--TCTTGGCGCCC-----ACCCGTACGCGGTGTGTGCCCG-AGGAGCATCGGCG--CC-CTCCAAAACGGAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGCCACGCATCGCGTCGCCCCCAC--AGCCTT---AGGATGGCTTCCCGTGCCCCCCC---TGGCGCGGCTGGCCCAAACGCGAGCAGCCCTCGGCGGGCGCGACGA-CAA---GTGGTGGTTGACTGGCTCAACTCGAGAGC-TGTCGC--GCCGAAAGAGGATATGCTGCCCCCGACCCTTGCAC-CATGCGTCGTCACGACGACGCGTGCC-ACGGCCGC Lisianthius_oreopolus -------------------------------------TCGAATCCTGCGAAGCGGACGACCCG-GGAACAT--GTT-TGACACAC---GGGGCGT-CGGGA--CG-TGGGTAA---CCGCG-GACCGTGT-GCGCGGCG-TCGATCGCGGTCGATCGTCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACGGAAT-CAGGGAT--GTC--TCTTGGCGCCC-----ACCCGTACGCGGTGTGTGCCCG-AGGAGCATCGGCG--CC-CTCTAAAACGGAAACGACCCCCGGCAACGGATATCTCG--------ATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGCCACGCATCGCGTCGCCCCCAC--AGCCTT---AGGATGGCTTCCCGTGCCCCCCC---TGGCGCGGCTGGCCCAAACGCGAGCAGCCCTCGGCGGGCGCGACGA-CAA---GTGGTGGTTGACTGGCTCAACTCGAGAGC-TGTCGC--GCCGAAAGAGGAT--GCTG-CCCCGACCCTTGCAC-CACGCGTCGTCACGACGACGCGTGCC-ACGGCCGC Lisianthius_quichensis -------------------------------------TCGAATCCTGCGAAGCGGACGACCCG-GTAACAT--GTT-TAACACAC--GGGG-CAT-CGGGA--CG-TGGGTAAAA-CCGCG-GACCGTGT-GCGCGGCG-TCGATCGCGGTCGGTCGTCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACGGAAT-CAGGGAT--GTC--TCTTGACGCCC-----ACCCGTACGCGGTGTGTGCTCG-AGGAGCATCGGCG--CC-CTCTAAAACGGAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lisianthius_saponarioides_A ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-GCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCAC--AGCCTT---AGGATGGCTTCCCGTGCCCACCCC--TGGCGCGGCTGGCCCAAACGCGAGCAGCTTTCGACGGGCGCGACGA-CGA---GTGGTGGTTGACTGGCTCAACTCGAGAGC-TGTCGC--ACCGAAAGAGGATG--CTG-CCCCGACCCCTGCAC-CATGCGTCGTCACGACG---CGTGCC-ACGGCCGC Lisianthius_saponarioides_B -------------------------------------TCGAATCCTGCGAAGCGGACGACCCG-GGAACATATGTT-TAACACAC--GGGGGCAT-CAGGA--CG-TGGGTAA---CCGCG-GACCGTGT-GCGCGGCA-TCGATCGCGGTCGATCGTCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAACTTAACGGAAT-CAGGGAT--GTC--TCTTGAAGCCC-----ACACGTACGCGGTGTGTGCTCG-AGGAGCATCGGCG--CC-CTCTAAAACGGAAACGACC-CCGGCAACCGATATCTCGGCTCTCGCATCGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lisianthius_seemannii_A -------------------------------------TCGAATCCTGCAAAGCGGACGACCTG-GGAACAT--GTT-CAACTCAC----GGGCAT-CGAGA--CG-TGGGTAA---CCACG-GACCGTGC-GCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCCGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCC--AACCCT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CGA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAAAGGGGACA--CGA-C---GACCC-T-CAC-CATGCGTCGCCACGACG---TGTGCC-ATGGCCGC Lisianthius_seemannii_B -------------------------------------TCGAATCCTGCAAAGCAGACGACCTG-GGAACAT--GTT-CAACACAC----GGGCAT-CGATA--CG-TGGGTAA---CCACG-GACCGTGC-GCACGTCG-TCGGTCGCGGCCGATCGTCGGGCAAAAAT-CAGAA-CTTCGGGCGCGGGGAAGCGCCAAGGAATTTAACTGAAT-CAGGGAT-------TCTTGATGCCC--------CGCACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCTAAAACAAGAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCCGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCC--AACCCT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CGA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAAAGGGGACA--CGA-C---GACCC-T-CAC-CATGCGTCGCCACGACG---TGTGCC-ATGGCCGC Lisianthius_seemannii_C -------------------------------------TCGAATCCTGCAAAGCAGACGACCTG-GGAACAT--GTT-CAAC-CAC----GGGCAT-CGAGA--CG-TGGGTAA---CCACG-GACCGTGC-GCACGTCG-TCGA{CT}CGCGG--GATCGTCGGGCAAAAAT-CAGAA-CTTCGGGCGCGGGGAAGCGCCAAGGAATTTAAGTGAAT-CGGGGAT-------TC-TGATGCCC--------CGCACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCTAGAACAAGAACGACCCCCGGCAACGGATATCTCGG-----GCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCCGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCC--AACCCT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CGA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAAAGGGGACA--CGA-C---GACCC-T-CAC-CATGCGTCGCCACGACG---TGTGCC-ATGGCCGC Lisianthius_skinneri -------------------------------------TCGAATCCTGCAAAGCAGACGACCTG-GGAACAT--GTT-TAACACAC----GGGCAT-CGAGACACG-TGGGTAA---GCACG-GACCGTGT-GCACGGCG-TCGATCGCGGTCGATCGTCGGGCAAAAAT-CAAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACTGAAT-CAGGGAT-------TCTTGATGCCC--------CGTACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCTAAAACAAAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCC--AACCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CAAGTGGTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAAAGAGGATA--CTG-CCCCGACCC-T-CAT-CATGCCTCGTCACGACG---TGTGCC-ATGGCCGC Lisianthius_troyanus -------------------------------------TCGAATCCTGCAAAGCAGACGACCTG-GGAACAT--GTT-TAACACAC----GGGCAT-CGAGA--CG-TGGGTAA---CCACG-GACCGTGT-GCACGGCA-TCGATCGCGGTCGATCGTCGGGCAAAACT-CAAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACTGAAT-CAGGGGT-------TCTTGTTGCCC--------CGTACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCTAAAACAAAAACGACCCCCGGCAACGGATATCTCGGCTCTCGCATCGATCAAGAACGTA-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lisianthius_umbellatus -------------------------------------TCGAATCCTGCAAAGCAGACGACCTG-GGAACAC--GTT-TAACACAC----GGGCAT-CGAGA--CG-TGGGTAA---CCACG-GACCGTGT-GCACGGCA-TCGATCGCGGTCGATCGTCGGGCAAAAAT-CAAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACTGAAT-CAGGGGT-------TCTTGATGCCC--------CGTACGCGGTGTGCGATCG-AGGAGCATCGACG---C-CTCTAAAACAAAAACGACCCCCGGCAACGGATATCTCGGCTCT-GCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCAGGCTGATGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCC--AAACCTT---AGGATGGCTTCCTGTGCCCC------TGGTGCGGCTGGCCTGAATGCGAGTACCTTTCGACGGGTGCGACGA-CAA---GTGGTGGTTGAGTGGCTCAACACGTGAGC-TGTCGC--GTCGAGAGAGGATA--CTG-CCCCGACCC-T-CAT-CATGCGTCGTCACGACG---TGTGCC-ATGGCCGC Lisianthius_viscidiflorus -------------------------------------CCGAATC-TGCAAAGCGGACGACCCG-GGAACAT--GTT-CAGCACACACGGGGGCAT-CGGGA--CG-TGGGCAA---CCGCG-GACCGTGT-GCGCGGCGGTCGCTCG----------TCGGGCGAAAAT-CCAAA-CT-CGGGCGCGGCGAAGCGCCAAGGAATTTAACGGAAT-CAGGGAT--GTC--TCTTGACGCCCCACCCGTGCGTACGCGGTGTGTGCTCG-AGGAGCATCGGCG--CC-CTCTAAAACGGAAACGACCCCCGGCAACGGATATCTCGGCTCTGGCATCGAT-AA-AACGTAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Macrocarpaea_glabra -------------------------------------TCGAATCCTGCGAAGCAGACGACCTG-AGAACAT--GTT-AAACTCAC----GGGCGTTCGGGA--CG-GGGGAGA---CCTCG-AACCGACG-GCACGATG-TCGACC--GGTTGCTCGTCGTGCGTAAAA-CTAA--CCCCGGGCGCGGATAAGCGCCAAGGAA---AACTATG--AAAGGAT-------TCTCGATGCCC--------CGTACGCGGTGTGCATGGG-AGGATCACGGGCG-TCT-GGA-GAAACAAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACCTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCC---AACCCAT---AAACTGGCTTCCCGTGCTT-------TCGTGCGGCTGGCCTAAACACGAGTCCCTAGCGACGGACGTTGTGA-CAA---GTGGTGGTTGATTTCCTCAACTAGAGCGC-TGTCAC--TTCGATTGAGGAGA--CTC-CCACGACCC-TGAT-GCAAGCGTCGTCATGACG---CCTGCC-ACGACCGC Neurotheca_loeselioides -------------------------------------TCGAATCCTGCCAAGCAGACGACCCG-TGAACTT--GTT-TAACATAC----GAGCGT-CGGTA--CA-TGGGAAT---CCATG-GATCGGCG-GCAAGGCA-TCGACC--GGTCGATTGTCGGGCTAAAAC-ATAAA-CT--GGGCGCAGTAAAGCGCCAAGGAA---GACGAAA--TAAGGAT-------TCTTTGTGCCC--------CGTACGCGGTCAGCACGGG-AGGACCATGGTCG-CCT-CTAAAAAACCAAAACAACT{CT}TCGGCAACGGATATCTCGGCTCTCGCATCGATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Potalia_amara_A -------------------------------------TCGAATCCAGCGAAGCGGACGACCCG-CGGACTT--GTT-TAACCGAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGTCG-GCACGGCG-TCGATC--GGTCGCTCGTCGTGTTGAAAC-CTAAA-CC-CGGGCGCCGAAAAGCGCCAAGGAA---ATCGAGA--AAAGGAC-------TCCCGACGCCC--------CATACGTGGTGCGCGCGGG-AGGAGCGCGGGCG-CCC-ATA-GAAACCGAAACGACTCTCGGCAACGGATATCTCGGGTCTCGCATCGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Potalia_amara_B -------------------------------------TCGAATCCAGCGAAGCGGACGACCCG-CGGACTT--GTT-TAACCGAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGTCG-GCACGGCG-TCGATC--GGTCGCTCGTCGTGTTGAAAC-CTAAA-CC-CGGGCGCCGAAAAGCGCCAAGGAA---ATCGAGA--AAAGGAC-------TCCCGACGCCC--------CATACGTGGTGCGCGCGGG-AGGAGCGCGGGCG-CCC-ATA-GAAACCGAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCC--AGCCCC---AAAATGGCTTCCCGTGCCCC------TGGCGTGGCTGGCCGAAATGCGAGTCCCTCGCGACGGACGCGACGA-CGG---GTGGTGGTTGAATCCCTCGGCTCGAGCGC-CGTCGC--GTCGGAAGAGGAGA--CTG-CCCCGACCC-CGGA-GCATGCGTCCCCACGACG---CGTGCC-ACGACC-- Potalia_elegans -------------------------------------TCGAATCCTGCGAAGCGGAC-ACCCG-CGGACTT--GTT-TAACCGAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCA-GACCGGCG-ACACGGCG-TCGATC--GGTCGCTC-TCGTGGTAAAA--CTAAA-CC-CGGGCGCCGAAA----CCATGGAA---ATCGAAA--AA--GAC-------TCCCGACGCCC--------CGTACGTGGTGCGTGCGGG-AGGAGCACGGGCG-CCT-GT---AAACCGAAACGACTCTCGGCAAC-GATATC-CGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAACTGCAAGTTGCGCGCGAAGCCATCCGGCCGAGGGCACGTCTGCTTGGGCGTCA-GCATCG-GTCGTGC--CC--AAGCCC---AAAATGGCTTCCCATGCCCC------TGGCGTGGCTGGCCGAAATGCGAGTCCTTCGCGACGGACGCGACGA--GG---GTGGTGGTTGAATCCCTTGGCTCGAGCGC-TGTCGC--GTCGGA-GAGGAGA--CTG-CCCCGACCC-TGGA-GCATGCGTCCCCACGACG---CGTGCC-ACGACCGC Potalia_maguireorum -------------------------------------TCGAAT-CCGCGAAGCGGACGACCCG-CGGACCT--GTT-TAACCGAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGTCG-GCACCGCG-TCGATC--GGTCGCTCGTCGT-CTAAAAC-CCAAA-CC-CGGGCGCCGAAAAGCGCCAAGGAA---ATCGAGA--AAAGGAC-------TCCCGACGCCC--------CGTATGGGGTGCGCGCGGG-AGGAGCACGGGCG-CCC-GTA-GAAACCGAAACGACTCTCGGCAACGGATATCTCGG-TCTCGAATCGATGAA-AACGTAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Potalia_resinifera_A -------------------------------------TCGAATCCCGCGAAGCGGACGACCCG-CGGACTT--GTT-TAACCGAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGTCG-GCACGGCG-TCGATC--GGTCGCTCGTCGTGCTAAAAC-CTAAA-CC-CGGGCGCCGAAAAGCGCCAAGGAA---ATCGAGA--AAAGGAC-------TCCCGACGCCA--------CGTACGTGGTGCGCGCGGG-GGGAGCACGGGCG-CCC-GTG-GAAACCGAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCC--ATCCCC---AAAATGGCTTCCCGTGCCCC------TGGCGTGGCTGGCCGAAATGCGAGTCCCTCGCGACGGACGCGACGA-CGG---GTGGTGGTTGGATCCCTCGGCTCGAGCGC-CGTCGC--GTCGGAAGAGGAGA--CTG-CCCCGACCC-CGGA-GCATGCGTCCCCACGACG---CGTGCC-ACGACCGC Potalia_resinifera_B -------------------------------------TCGAATCCCGCGAAGCGGACGACCCG-CGGACAT--GTT-TAACCGAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGTCG-GCATGGCG-TCGATC--GGTCGCTCGTCGTGCTAAAAC-CTAAA-CC-CGGGCGCCGAAAAGCGCCAAGGAA---ATCGAGA--AAAGGAC-------TCCCGACGCCA--------CGTACGCGGTGCGCGCGGG-AGGAGCACGGGCG-CCT-GTG-GAAACCGAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCA-AAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCC--ATCCCC---AAAATGGCTTCCCGTGCCCC------TGGCGTGGCTGGCCGAAATGCGAGTCCCTCGCGACGGACGCGACGA-CGG---GTGGTGGTTGAATCCCTCGGCTCGAGCGC-CGTCGC--GTCGGAAGAGGAGA--CTG-CCCCGACCC-CGGA-GCATGCGTCCCCACGACG---CGTGCC-ACGACCGC Potalia_resinifera_C -------------------------------------TCGAATCCCGCGAAGCGGACGACCCG-CGGACTC--GTT-TAACCGAC----GGGCGT-CGGGA--CG-TGGGGAA---CCGCG-GACCGTCG-GCATGGCG-TCGATC--GGTCGCTCGTCGTGCTAAAAC-CTAAA-CC-CGGGCGCCGAAAAGCGCCAAGGAA---ATCGAGA--AAAGGAC-------TCCCGACGCCA--------CGTACGCGGTGCGCGCGGG-GGGAGCACGGGCG-CCT-GTG-GAAACCGAAACGACTCTCGGCAACGGATATCTCGGCT-----ATCGATGAAGAACGTAGC-AACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATCCGGCCGAGG-CACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCCC--ATCCCC---AAAATGGCTTCCCGTGCCCC------TGGCGTGGCTGGCCGAAATGCGAGTCCCTCGCGACGGACGCGACGA-CGG---GTGGTGGTTGAGTCCCTCGGCTCGAGCGC-CGTCGA--GTCGGAAGAGGAGA--CTG-CCCCGACCC-CGGA-GCATGCGTCCCCACGACG---CGTGCC-ACGACCGC Prepusa_montana_A CAAGGTT-CCGTAG-TGA-CCTGCGGAAGGATCATTGTCGAATCCTGCAATGCAGAAGACCCG-AGGACAT--GTT-CAATTCAC----GGACACCCGAGA--TG-TGGGAGA---CCACG-GATCGGTG-GCATGATG-ACGGCT--GGCCGCTCGTCTTGTGCTGC-TCTAAA-CCC--GGCGCAGAAAAGCGCCAAGGAA---AACGCAA--AAGGGAT-------TCTCGATGCCC--------CGTACGCGGTGCGCA-GAG-GGAAGCACAGGCG-CCT-AGA-GAAACCATAACGACTCTCGG-AACGGATATCTCGG-TCTCGCATC-AT-AAGAACGTA-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Prepusa_montana_B CAAGGTTTCCGTAGGTGA-CCTGCGGAAGGATCATTGTCGAATCCTGCAATGCAGAAGACCCG-AGGACAT--GTT-CAATTCAC----GGACACCCGAGA--TG-TGGGAGA---CCACG-GATCGGTG-GCATGATG-ACGGCT--GGCCGCTCGTCTTGTGCTGC-TCTAAA-CCC--GGCGCAGAAAAGCGCCAAGGAA---AACGCAA--AAGGGAT-------TCTCGATGCCC--------CGTACGCGGTGCGCA-GAG-GGAAGCACAGGCG-CCT-AGA-GAAACCATAACGACTCTCGG-AACGGATATCTCGGCTCTCGCATCGATTAAGAACGTAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Swertia_tetraptera -------------------------------------TCGAATCCTGCAAAGCAGACGACCCG-AGAACAT--GTT-TAACAAAC----GGGCGTCCGGAA--AG-AGGGAAA---CCACG-GACCGGCA-GCATGACG-TCGACC--GGTCGTGCGTTCTGCAC-ACAAACAA--CCCCGGGCGCATAAAAGCGCCAAGGAA---AACAAGA--AAGGGA--------TCTTGACGCGC--------CGTACGCGGAGTGCACGAG-AGGGCAACAGGCA-CCT-GAA-GAAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGCGTCGCCCCCC---AACCCC---AAACTGGCTTCCCGTGCTT-------TGTCGCGGCTGGCCTAAATATGAGTCCCTTGCGACGGACACGACGAACAA---GTGGTGGTTGATTTTGTCAACTGAGGTGC-TGTCGC--GTCGAGTTAGGAGA--CTC--CCCGACCC-TGAT-GCACGCGTCGTCACGACG---CTTGCT-ACGACCGC Symbolanthus_calygonus -------------------------------------TCGAATCCTGCAAAGCAGACCACCGG-AGAACAT--GTT-AAACTCAC----GGTCGTTTGGAA--GG--GGGAGA---CCCCG-GACCGACG-GCACGACG-TCTACC--GGTTGCTCGTCGTGCTTAACA-ATAA--CA-CGGGCGCGGAAAAGCGCCAAGGAA---AACTATT--AAAGGAT-------TCTCGACACCC--------CGTACGCGGTGTGCACGGG-AGGATCATGAGCC-TCT-GTA-TAAACAAAAACAACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCAAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCT---AACCAT---AAATTGGCTTCCCGTGCAC-------GCGTGCGGCTGGCCTAAATACGAGTCCCTTACGATGGACACGGTGA-CAA---GTGGTGGTTGATTATCTCAACTAGAGTGC-TGTCAC--CTCAATTCGAGAGA--CTC-CTTTGATCC-TGAT-GCATGCGTCGTCATGACG---ATTGCC-ACGACCGC Symphyllophyton_caprifolioides -------------------------------------TCGAATCCTGCAAAGCAGACGACCAG-CGAATGT--GTT-TTATGA-CAC---GGCGT-ACGTA--CG-TGAGAAA---CCACGCGAC-GGCG-GCACGACG-TCGGCA----CCGCTCGTCGGGCGGAACA-CAAAAACC-CGGGCGC-GAAAAGCGCCAAGGAT---TACGTAAA-AGAGGAT-----CCTCTCGACACCT--------CGTGCGCGGT{GT}TGCGCGGG-AGGGCGTTGGGCG-CCT-GTG-CAAACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGCGTCGCCCCCCATCAATCCCAC-AAACTGGCCTCCCGTGCCT-------GTGCGCGGCTGGCCTAAAACTGAGTCCCACGTGATGGACGCGACGA-CTT---{CG}TGGTGGTTGACTTTCTGAAGTTGAGCGCTTGTCGT--ATCATACGAGGTGA--CTT-TCCCGACCC-TATG-GCACTTGTCATAA----------------------- Tachia_grandiflora -------------------------------------TCGAATCCTGCAAAGCAGACAACCGG-AGAACAT--GTT-AAACTCAC----GGGCGTTCGGGA--CG-GGGGAGA---CCCCA-GACCGACG-GCATGGCG-TCGACC--GGTTGCTCGTCGTGCGTAACA-CTAA--CCCCGGGCGCGGAAAGGCGCCAAGGAA---AACTATG--AAAGGAT-------TCTCGATGCCC--------CGTACGCGGTGTGCATGGG-AGGATCACGGGCG-TCTAGGA-GAATCAAAAACGACTCTCGACAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTCGTTTGAAC-GCAAGTTGCGCCCAAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTCCCC-------------AAACTGGCTTCCCGTGCTT-------ACGTGCGGCTGGCCTAAATACGAGTCCCTTGCGACGGACGTGATGA-CAA---GTGGTGGTTGATTACCTCAACTAGAGTGC-TGTCAC--TTCGAATGAGGAGA--CTA-CCTCGACCC-TGAT-GCATGCGTCGTCATGATG---CTTGCC-ACGACCGC Urogentias_ulugurensis -------------------------------------TCGAATCCTGCAAAGCAGACGACCCG-TGAACTT--GTT-TAACCAAC----GGGCAT-CGGGA--CT-TGAGAAA---TCATA-GACCGATG-GCACGGCG-TCGGCC--GGTCGTTCGTCGGGCGATATAACTAATACC-CGGGCGCAGAAAAGCGCCAAGGAA---AACGAAATAAAAGGAT-------TTCTGATGCCC--------CGTACGCGGTGTGTGTTAG-AGGATCATGGTCG-TCT-CTA-GAAACAAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAACTGCGATACTTGGTGTGAATTGCAGAAT-CCCGTGAACCAT-CGAGTC-TTTGAAC-GCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCC---ACACCC---AAATTGGCTTCCCGTTCCAT------TGGAGCGGCTGGCCTAAATATGAGTCCCTTGCGACGGACGCGACGA-CAA---GTGGTGGTTGATTTCCTCAACTCGAATGC-TGTCGTGTGTCGAGAGAGTGGA--CTG-CCCCGACCC-TGGC-GCATGTGTTGTCATAACA---CGTGTC-ACGACCGC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_alignment_based_on_secondary_structures) = N: 1-679; CODONPOSSET CodonPositions (CHARACTERS = ITS_alignment_based_on_secondary_structures) = N: 1-679; END;