Matrix 42440 of Study 21486
Matrices
Title: Portunoidea H3-Only Alignment
Description: 123 taxa, partial H3 sequence data, alignment 327 bps
Rows
Taxon Label | Row Segments | Characters 1?–30 |
---|---|---|
Cancer pagurus OTU001 | (none) | TCGCAAGTCTACCGGTGGGAAGGCGCCTCG |
Carpilius convexus OTU002 | (none) | CCGCAAATCCACCGGCGGCAAGGCGCCGCG |
Corystes cassivelaunus OTU003 | (none) | CCGCAAATCTACTGGTGGCAAGGCGCCCCG |
Menippe rumphii OTU004 | (none) | TCGCAAATCCACCGGTGGCAAGGCGCCCCG |
Daldorfia horrida OTU005 | (none) | TCGCAAGTCCACCGGTGGCAAAGCGCCCCG |
Etisus utilis OTU006 | (none) | TCGCAAATCCACCGGCGGAAAGGCGCCGCG |
Carcinus maenas OTU007 | (none) | TCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Portumnus latipes OTU008 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Coelocarcinus foliatus OTU010 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Benthochascon hemingi OTU011 | (none) | TCGCAAATCCACCGGTGGCAAGGCGCCCCG |
Chaceon granulatus OTU012 | (none) | TCGCAAATCCACCGGTGGCAAGGCGCCCCG |
Geryon longipes OTU013 | (none) | TCGCAAATCCACCGGTGGCAAGGCGCCCCG |
Ovalipes iridescens OTU015 | (none) | TCGCAAATCTACCGGTGGCAAGGCGCCCCG |
Ovalipes punctatus OTU016 | (none) | ------------------------------ |
Ovalipes trimaculatus OTU018 | (none) | {CT}CGCAAATCTACCGGTGGCAAGGCGCC |
Pirimela denticulata OTU019 | (none) | TCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Sirpus zariquieyi OTU020 | (none) | TCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Bathynectes maravigna OTU022 | (none) | TCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Liocarcinus corrugatus OTU023 | (none) | TCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Liocarcinus depurator OTU024 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Liocarcinus holsatus OTU025 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Liocarcinus maculatus OTU026 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Liocarcinus navigator OTU028 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Macropipus tuberculatus OTU030 | (none) | TCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Necora puber OTU031 | (none) | TCGCAAGTCCACTGGTGGCAAGGCTCCCCG |
Parathranites orientalis OTU032 | (none) | ------------------------------ |
Polybius henslowii OTU033 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thia scutellata OTU034 | (none) | TCGCAAGTCTACCGGTGGCAAGGCGCCTCG |
Carupa ohashii OTU036 | (none) | TCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Carupa tenuipes var A OTU037 | (none) | TCGCAAGTCTACCGGCGGCAAGGCGCCCCG |
Richerellus moosai OTU043 | (none) | TCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Podophthalmus vigil OTU046 | (none) | TCGCAAGTCCACTGGTGGGAAGGCACCCCG |
Arenaeus cribrarius OTU047 | (none) | TCGCAA{AG}TCCACCGGTGGCAAGGCACC |
Callinectes sapidus OTU051 | (none) | TCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Laleonectes nipponensis OTU052 | (none) | TCGTAAGTCCACTGGTGGCAAGGCGCCCCG |
Lupocyclus philippinensis OTU054 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Lupocyclus rotundatus OTU056 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Portunus Achelous ordwayi OTU061 | (none) | {CT}CGCAAGTCCACCGGTGGCAAGGCGCC |
Portunus Cycloachelous orbitosinus OTU068 | (none) | TCGCAAGTCTACTGGTGGCAAAGCGCCCCG |
Portunus Lupocycloporus gracilimanus OTU069 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Portunus Monomia argentatus OTU070 | (none) | TCGCAAGTCCACTGGTGGCAAAGCGCCCCG |
Portunus Monomia gladiator OTU071 | (none) | TCGCAAGTCCACTGGTGGCAAAGCGCCCCG |
Portunus Monomia pseudoargentatus OTU073 | (none) | TCGCAAGTCCACTGGTGGCAAAGCGCCCCG |
Portunus hastatus OTU075 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Portunus inaequalis OTU076 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Portunus pelagicus OTU077 | (none) | T?GCAAGTCCACCGGTGGCAAGGCGCCCCG |
Portunus trituberculatus OTU080 | (none) | TCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Scylla serrata OTU089 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Caphyra bedoti OTU091 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Caphyra loevis OTU092 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Caphyra cf fulva OTU093 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Caphyra sp B OTU095 | (none) | CCGCAAGTCCACTGGTGGCAAAGCGCCCCG |
Caphyra tridens OTU096 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Caphyra yookadai OTU097 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Charybdis acuta OTU098 | (none) | ------------------------------ |
Charybdis annulata OTU100 | (none) | ----------------GGGAA{AG}GC?CC |
Charybdis bimaculata OTU101 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Charybdis callianassa OTU102 | (none) | CCGCAAGTCCACTGGTGGCAAGGCACCCCG |
Charybdis feriata OTU103 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Charybdis hellerii OTU104 | (none) | CCGCAAGTCTACTGGTGGCAAGGCACCCCG |
Charybdis hongkongensis OTU105 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Charybdis japonica OTU106 | (none) | CCGCAAGTCCACCGGTGGCAAGGCACCCCG |
Charybdis longicollis OTU107 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Charybdis lucifera OTU108 | (none) | CCGCAAGTCCACTGGTGGCAAGGCACCCCG |
Charybdis natator OTU109 | (none) | CCGCAAGTCCACTGGTGGCAAGGCACCCCG |
Charybdis granulata OTU110 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Charybdis orientalis OTU111 | (none) | CCGCAAGTCCACTGGTGGCAAGGCACCCCG |
Charybdis rathbuni OTU113 | (none) | CCGCAAGTCCACTGGTGGCAAGGCACCCCG |
Charybdis variegata OTU114 | (none) | CCGCAAGTCCACTGGTGGCAAGGCACCCCG |
Cronius ruber OTU116 | (none) | TCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Gonioinfradens paucidentatus OTU117 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Goniosupradens acutifrons OTU118 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Goniosupradens hawaiensis OTU120 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Goniosupradens obtusifrons OTU121 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Lissocarcinus arkati OTU122 | (none) | CCGCAAGTCAACTGGTGGCAAGGCACCCCG |
Lissocarcinus holothuricola OTU123 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Lissocarcinus laevis OTU124 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Lissocarcinus orbicularis OTU125 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Lissocarcinus polybiodes OTU126 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Thalamita admete OTU127 | (none) | -CGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Thalamita aff admete OTU128 | (none) | -------TCCACTGGTGGCAAGGCGCCCCG |
Thalamita auauensis OTU129 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Thalamita bevisi OTU130 | (none) | CCGTAAGTCCACTGGTGGCAAGGCGCCCCG |
Thalamita bouvieri OTU131 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita chaptalii OTU132 | (none) | --------------GTGGCAAGGCGCCCCG |
Thranita coeruleipes OTU133 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thranita crenata OTU134 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thranita danae OTU135 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thranita foresti OTU136 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita cf gatavakensis sp B OTU137 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita cf gatavakensis sp A OTU138 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamonyx gracilipes OTU139 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Thalamita granosimana OTU140 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita integra OTU141 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita kagosimensis OTU142 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita philippinensis OTU143 | (none) | ----------ACCGGTGGCAAGGCGCCCCG |
Thalamita aff kukenthali OTU144 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita malaccensis OTU145 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita mitsiensis OTU146 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita oculea OTU147 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita pseudopoissoni OTU148 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita parvidens OTU149 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita picta OTU150 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Thalamita gloriensis OTU151 | (none) | CCGCAAGTCCACTGGTGGCAAGGCACCCCG |
Thranita prymna OTU152 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita pseudoculea OTU153 | (none) | CCGCAAGTCCACCGGTGGCAAGGCACCCCG |
Thranita pseudopelsarti OTU154 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita quadrilobata OTU155 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Thranitaa rubridens OTU156 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thranita aff rubridens OTU157 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita savignyi OTU158 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Thalamita seurati OTU159 | (none) | CCGCAAGTCCACTGGTGGCAAGGC?CCCCG |
Thalamita sima OTU160 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thranita spinicarpa OTU161 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Thalamita aff spinifera OTU162 | (none) | CCGCAAGTCCACTGGTGGCAAGGCTCCCCG |
Thalamita stephensoni OTU164 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Thalamitoides quadridens OTU165 | (none) | CCGCAAGTCCACAGGTGGCAAGGCACCCCG |
Trierarchus cf cooperi sp A OTU168 | (none) | -CGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Trierarchus cf cooperi sp B OTU169 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Trierarchus rotundifrons OTU170 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Trierarchus woodmasoni OTU171 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Zygita longifrons OTU172 | (none) | CCGCAAGTCCACCGGTGGCAAGGCGCCCCG |
Zygita murinae OTU173 | (none) | CCGCAAGTCCACTGGTGGCAAGGCGCCCCG |
Columns
None of the columns has a description.