Matrix 42442 of Study 21486
Matrices
Title: Portunoidea CO1-Only Alignment
Description: 148 taxa, partial CO1 sequence data, alignment 657 bps
Rows
Taxon Label | Row Segments | Characters 1?–30 |
---|---|---|
Cancer pagurus OTU001 | (none) | ACATTATATTTTATTTTTGGAGCTTGAGCA |
Carpilius convexus OTU002 | (none) | ------------------------------ |
Corystes cassivelaunus OTU003 | (none) | ACATTATATTTTATTTTTGGAGCTTGAGCT |
Menippe rumphii OTU004 | (none) | ------------------------------ |
Daldorfia horrida OTU005 | (none) | ------------------------------ |
Etisus utilis OTU006 | (none) | ------------------------------ |
Carcinus maenas OTU007 | (none) | ACACTATATTTTATCTTTGGGGCTTGAGCT |
Coelocarcinus foliatus OTU010 | (none) | ---------------TTTGGGGCATG{AG} |
Benthochascon hemingi OTU011 | (none) | ------------------------------ |
Chaceon granulatus OTU012 | (none) | ------------------------------ |
Geryon longipes OTU013 | (none) | ACATTATATTTTATTTTTGGGGCATGAGCC |
Ovalipes punctatus OTU016 | (none) | ACTCTATACTTCATTTTCGGAGCTTGAGCC |
Ovalipes trimaculatus OTU018 | (none) | ACTCTATACTTCATTTTTGGAGCTTGAGCT |
Bathynectes longispina OTU021 | (none) | ACATTATATTTTATCTTTGGAGCTTGAGCA |
Bathynectes maravigna OTU022 | (none) | ACATTATATTTTATCTTTGGAGCTTGAGCA |
Liocarcinus corrugatus OTU023 | (none) | ACATTATATTTCATCTTTGGTGCTTGAGCT |
Liocarcinus depurator OTU024 | (none) | ----------------------------CA |
Liocarcinus holsatus OTU025 | (none) | ACACTATATTTTATCTTCGGTGCCTGAGCC |
Liocarcinus maculatus OTU026 | (none) | ----------------------------CT |
Liocarcinus marmoreus OTU027 | (none) | ACACTATATTTTATTTTCGGTGCTTGAGCC |
Liocarcinus navigator OTU028 | (none) | ACTTTATATTTTATTTTTGGTGCTTGAGCT |
Liocarcinus vernalis OTU029 | (none) | ---------------TTCGGTGCTTGAGCC |
Macropipus tuberculatus OTU030 | (none) | ACCTTATATTTTATCTTTGGAGCTTGAGCT |
Necora puber OTU031 | (none) | ACATTATATTTTATCTTTGGAGCTTGAGCA |
Polybius henslowii OTU033 | (none) | ACCCTATATTTTATCTTCGGTGCCTGAGCC |
Atoportunus gustavi OTU035 | (none) | ACATTATATTTTATCTTCGGAGCATGATCA |
Carupa tenuipes var A OTU037 | (none) | ACATTATATTTTATTTTCGGAGCTTGATCT |
Carupa tenuipes var B OTU038 | (none) | ACACTATATTTTATTTTCGGAGCTTGATCT |
Catoptrus cf. nitidus OTU039 | (none) | ACATTATATTTCATCTTTGGAGCTTGATCT |
Catoptrus aff nitidus OTU040 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCT |
Libystes nitidus OTU042 | (none) | ACATTATATTTCATCTTTGGAGCATGATCA |
Podophthalmus nacreus OTU045 | (none) | ------------------------------ |
Podophthalmus vigil OTU046 | (none) | ACATTATATTTTATCTTTGGGGCATGATCC |
Arenaeus cribrarius OTU047 | (none) | ACATTATATTTTATTTTTGGAGCATGATCT |
Arenaeus mexicanus OTU048 | (none) | ACCTTATATTTTATTTTCGGAGCATGATCT |
Callinectes marginatus OTU049 | (none) | ACATTATACTTTATTTTTGGAGCATGATCA |
Callinectes sapidus OTU051 | (none) | ACATTATATTTCATTTTTGGAGCATGATCT |
Laleonectes nipponensis OTU052 | (none) | ACATTATATTTTATCTTTGGGGCATGATCT |
Lupocyclus quinquedentatus OTU055 | (none) | ACATTATATTTCATTTTTGGAGCATGATCA |
Portunus Achelous depressifrons OTU058 | (none) | ACCTTATATTTTATTTTCGGGGCTTGATCA |
Portunus Achelous gibbesii OTU060 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCG |
Portunus Achelous ordwayi OTU061 | (none) | ACCTTATATTTTATTTTCGGGGCTTGATCT |
Portunus Achelous spinicarpus OTU064 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCA |
Portunus Achelous spinimanus OTU065 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCT |
Portunus Achelous tumidulus OTU066 | (none) | ACATTATATTTCATTTTCGGAGCCTGATCC |
Portunus Cycloachelous granulatus OTU067 | (none) | ACATTATATTTTATTTTTGGGGCATGATCT |
Portunus Cycloachelous orbitosinus OTU068 | (none) | ------------------------------ |
Portunus Lupocycloporus gracilimanus OTU069 | (none) | ------------------------------ |
Portunus Monomia argentatus OTU070 | (none) | ------------------------------ |
Portunus Monomia gladiator OTU071 | (none) | ------------------------------ |
Portunus Monomia petreus OTU072 | (none) | ACCTTATATTTCATTTTTGGAGCATGATCA |
Portunus Monomia pseudoargentatus OTU073 | (none) | ------------------------------ |
Portunus anceps OTU074 | (none) | ---CTATATTTCATTTTTGGAGCATGATCA |
Portunus pelagicus OTU077 | (none) | ------------------------------ |
Portunus sanguinolentus hawaiiensis OTU078 | (none) | ACATTATATTTCATTTTTGGAGCATGATCA |
Portunus sayi OTU079 | (none) | ACATTATATTTCATTTTTGGAGCATGATCA |
Portunus trituberculatus OTU080 | (none) | ACATTATATTTTATTTTTGGAGCATGATCA |
Portunus ventralis OTU081 | (none) | ACTTTATACTTCATTTTTGGGGCTTGATCA |
Portunus Xiphonectes arabicus OTU082 | (none) | ACCTTATATTTTATTTTCGGAGCATGATCT |
Portunus Xiphonectes hastatoides OTU083 | (none) | ------------------------------ |
Portunus Xiphonectes aff longispinosus OTU084 | (none) | ACATTATATTTTATCTTTGGAGCATGATCA |
Portunus Xiphonectes longispinosus OTU085 | (none) | ACATTATATTTTATTTTTGGAGCATGATCA |
Portunus Xiphonectes tenuipes OTU086 | (none) | ------------------------------ |
Scylla olivacea OTU087 | (none) | ACATTATATTTTATCTTTGGAGCATGATCT |
Scylla paramamosain OTU088 | (none) | ACTCTATATTTTATTTTTGGAGCATGATCT |
Scylla serrata OTU089 | (none) | ACTCTATATTTCATCTTTGGAGCATGATCT |
Scylla tranquebarica OTU090 | (none) | ACTTTATATTTCATTTTTGGAGCATGATCT |
Caphyra bedoti OTU091 | (none) | ACATTATATTTCATTTTCGGAGCCTGATCA |
Caphyra loevis OTU092 | (none) | ACGCTATATTTTATTTTTGGAGCTTGATCG |
Caphyra cf fulva OTU093 | (none) | ACATTATATTTTATCTTTGGAGCTTGATCC |
Caphyra sp A OTU094 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCT |
Caphyra sp B OTU095 | (none) | ------------------------------ |
Caphyra tridens OTU096 | (none) | ACATTATATTTTATTTTTGGAGCCTGATCA |
Caphyra yookadai OTU097 | (none) | ACATTATACTTTATTTTTGGAGCTTGATCA |
Charybdis annulata OTU100 | (none) | ACACTATATTTTATTTTTGGAGCTTGATCA |
Charybdis bimaculata OTU101 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCA |
Charybdis callianassa OTU102 | (none) | ACATTATATTTTATTTTTGGGGCTTGATCT |
Charybdis feriata OTU103 | (none) | ACATTATATTTTATCTTCGGAGCTTGATCA |
Charybdis hellerii OTU104 | (none) | ACATTATATTTTATTTTTGGGGCTTGATCA |
Charybdis hongkongensis OTU105 | (none) | ------------------------------ |
Charybdis japonica OTU106 | (none) | ACACTATATTTTATTTTCGGAGCTTGATCA |
Charybdis longicollis OTU107 | (none) | ACATTATATTTCATTTTTGGAGCTTGATCT |
Charybdis lucifera OTU108 | (none) | ACACTATATTTTATTTTTGGAGCTTGATCA |
Charybdis natator OTU109 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCA |
Charybdis granulata OTU110 | (none) | ------------------------------ |
Charybdis orientalis OTU111 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCA |
Charybdis sagamiensis OTU112 | (none) | ACATTATATTTTATCTTCGGAGCTTGATCA |
Charybdis rathbuni OTU113 | (none) | ------------------------------ |
Charybdis variegata OTU114 | (none) | ACACTATATTTTATTTTTGGAGCCTGATCA |
Cronius edwardsi OTU115 | (none) | ACATTATATTTTATTTTCGGAGCTTGATCT |
Cronius ruber OTU116 | (none) | ACATTATATTTTATTTTCGGAGCTTGATCT |
Gonioinfradens paucidentatus OTU117 | (none) | ACATTATATTTTATTTTCGGAGCTTGATCA |
Goniosupradens acutifrons OTU118 | (none) | ACACTATATTTTATTTTCGGAGCTTGATCA |
Goniosupradens erythrodactylus OTU119 | (none) | ACATTATATTTTATTTTCGGAGCTTGATCA |
Goniosupradens hawaiensis OTU120 | (none) | ACATTATATTTTATTTTCGGGGCTTGATCA |
Goniosupradens obtusifrons OTU121 | (none) | ACACTATATTTTATTTTCGGAGCTTGATCA |
Lissocarcinus arkati OTU122 | (none) | ------------------------------ |
Lissocarcinus holothuricola OTU123 | (none) | ------------------------------ |
Lissocarcinus laevis OTU124 | (none) | ACACTATATTTCATTTTTGGAGCTTGATCT |
Lissocarcinus orbicularis OTU125 | (none) | ACACTTTATTTCATCTTTGGAGCCTGATCT |
Lissocarcinus polybiodes OTU126 | (none) | ACACTTTATTTTATCTTTGGAGCCTGATCT |
Thalamita admete OTU127 | (none) | ACATTATATTTTATCTTCGGAGCTTGATCA |
Thalamita aff admete OTU128 | (none) | ------------------------------ |
Thalamita auauensis OTU129 | (none) | ---TTATATTTCATCTTTGGAGCTTGATCA |
Thalamita bevisi OTU130 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCA |
Thalamita bouvieri OTU131 | (none) | ACACTATACTTCATCTTTGGAGCTTGATCA |
Thalamita chaptalii OTU132 | (none) | ACATTATATTTTATCTTCGGAGCTTGATCT |
Thranita coeruleipes OTU133 | (none) | ACACTATACTTCATCTTCGGAGCTTGATCA |
Thranita crenata OTU134 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCA |
Thranita danae OTU135 | (none) | ACCCTATATTTTATCTTCGGAGCTTGATCA |
Thranita foresti OTU136 | (none) | ACTCTATATTTTATCTTCGGAGCTTGATCA |
Thalamita cf gatavakensis sp B OTU137 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCA |
Thalamita cf gatavakensis sp A OTU138 | (none) | ACATTATATTTTATTTTCGGAGCTTGATCC |
Thalamonyx gracilipes OTU139 | (none) | ------------------------------ |
Thalamita granosimana OTU140 | (none) | ACATTATATTTTATCTTCGGAGCTTGATCA |
Thalamita integra OTU141 | (none) | ACTTTATATTTCATCTTCGGAGCTTGATCT |
Thalamita kagosimensis OTU142 | (none) | ACCTTATATTTTATTTTTGGAGCTTGATCA |
Thalamita philippinensis OTU143 | (none) | ACATTATATTTCATTTTTGGGGCTTGATCT |
Thalamita aff kukenthali OTU144 | (none) | ------------------------------ |
Thalamita malaccensis OTU145 | (none) | ACATTATATTTTATTTTCGGAGCTTGATCA |
Thalamita mitsiensis OTU146 | (none) | ACACTATATTTTATCTTTGGAGCTTGATCT |
Thalamita oculea OTU147 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCA |
Thalamita pseudopoissoni OTU148 | (none) | -------------------------GATCA |
Thalamita parvidens OTU149 | (none) | ACCTTATATTTTATCTTCGGAGCTTGATCT |
Thalamita picta OTU150 | (none) | ACATTATATTTTATCTTTGGAGCTTGATCT |
Thalamita gloriensis OTU151 | (none) | ACGTTATATTTTATCTTCGGAGCTTGATCA |
Thranita prymna OTU152 | (none) | ----TATATTTCATCTTCGGAGCTTGATCA |
Thalamita pseudoculea OTU153 | (none) | ------------------------------ |
Thranita pseudopelsarti OTU154 | (none) | ACACTATACTTCATCTTCGGAGCTTGATCA |
Thalamita quadrilobata OTU155 | (none) | ACATTATATTTCATCTTCGGAGCCTGATCA |
Thranitaa rubridens OTU156 | (none) | ----------------------CTTGATCA |
Thranita aff rubridens OTU157 | (none) | ACACTATATTTCATCTTTGGAGCTTGATCA |
Thalamita savignyi OTU158 | (none) | ACATTATATTTTATCTTCGGAGCTTGATCA |
Thalamita seurati OTU159 | (none) | ---TTATATTTTATCTTTGGAGCCTGATCT |
Thalamita sima OTU160 | (none) | -------------------------GATCA |
Thranita spinicarpa OTU161 | (none) | ACATTATATTTTATCTTTGGAGCTTGATCA |
Thalamita aff spinifera OTU162 | (none) | ACATTATACTTTATTTTCGGGGCTTGATCT |
Thranita spinimana OTU163 | (none) | ----------------------------CA |
Thalamita stephensoni OTU164 | (none) | -------------------------GATCC |
Thalamitoides quadridens OTU165 | (none) | ACATTATATTTTATTTTTGGAGCTTGATCA |
Thalamitoides spinigera OTU166 | (none) | ACATTATATTTTATCTTTGGAGCTTGATCA |
Thalamitoides tridens OTU167 | (none) | ------------------------------ |
Trierarchus cf cooperi sp A OTU168 | (none) | ACATTATATTTTATCTTTGGAGCATGATCA |
Trierarchus cf cooperi sp B OTU169 | (none) | ACATTATATTTTATCTTTGGAGCATGGTCA |
Trierarchus rotundifrons OTU170 | (none) | ACCTTATATTTTATTTTCGGAGCTTGATCA |
Trierarchus woodmasoni OTU171 | (none) | ACACTATATTTTATCTTCGGAGCTTGATCA |
Zygita longifrons OTU172 | (none) | ACGCTATACTTTATTTTCGGAGCTTGATCA |
Zygita murinae OTU173 | (none) | ACACTATATTTTATTTTCGGAGCCTGATCA |
Columns
None of the columns has a description.