TreeBASE Search-Matrix 42667 of study 16293

@ARTICLE{TreeBASE2Ref23589, author = {Renaud Travadon and Daniel Paul Lawrence and Suzanne Rooney-Latham and W. Douglas Gubler and Philippe eric Rolshausen and kendra baumgartner}, title = {Cadophora species associated with wood-decay of grapevine in North America}, year = {2015}, keywords = {Multigene phylogeny, Phylogenetic species concept, Fungi, Leotiomycetes, Wood pathogens, Vitis, Esca, Petri disease}, doi = {}, url = {http://}, pmid = {}, journal = {Fungal Biology}, volume = {119}, number = {1}, pages = {53--66}, abstract = {The role of Cadophora species in the decline of grapevine (Vitis vinifera L.), in particular Cadophora luteo-olivacea, has recently been illustrated in California, South Africa, Spain, Uruguay, and Canada. This species has been shown to cause wood lesions and black wood streaking when inoculated to grapevine and its involvement in the decline of young (Petri disease) and mature vines (Esca) is acknowledged. In North America, little is known regarding the diversity of Cadophora species involved in grapevine decline, their geographic distribution, and their ability to degrade grapevine wood. Accordingly, we characterized different Cadophora isolates recovered from decayed grapevine wood sampled from a broad geographic area in North America, using molecular, morphological, and pathogenicity data. Five species, including C. luteo-olivacea and C. melinii, as well as three newly described species, C. orientamericana, C. novi-eboraci, and C. spadicis, were revealed based on phylogenetic analysis of three loci (ITS, translation elongation factor 1-alpha, and beta-tubulin). Restricted to the northeastern US were C. orientamericana, C. novi-eboraci, and C. spadicis, whereas C. luteo-olivacea was only recovered from California, and C. melinii was present both in California and Ontario, Canada. Morphological characterization (sizes of conidia, hyphae, conidiophores, and conidiogenous cells) revealed overlapping features among these five species. The four species included in pathogenicity trials (all but C. spadicis) produced wood lesions significantly longer than in control plants after 24 months incubation in the greenhouse, indicating their ability to degrade grapevine wood.} }

Delicious

Connotea

Matrix 42667 of Study 16293

Reviewer/Referee Access Agreement

You have reached this page using a special URL that is intended to be used by journal editors and reviewers or referees of a paper that is under consideration for publication. This URL gives you access to the submitted data and metadata associated with analyses and results presented in the paper under review. Please carefully examine the data paying special attention to the following:

The citation data (authors, year, citation, abstract) should be complete, except for information that is not yet known (e.g. volume or page numbers).
Verify that nexus files are error-free and executable by software programs (e.g. PAUP, Mesquite, MacClade, etc). Please make sure that the taxon labels for trees are identical, or a subset of, the taxon labels in data matrices connected by way of an analysis. If taxon labels in trees do not match with taxon labels in associated data matrices, the data will not be useful to the scientific community.
Verify that data are not missing and that opportunities to supply valuable metadata are not overlooked. For example, TreeBASE can store Genbank accession numbers, museum voucher IDs, latitude and longitudes for specimen localities, character names and character state names for morphological data, etc. Including these metadata are sometimes overlooked by submitting authors, yet sharing this metadata is extremely valuable to the scientific community. Please use your power as a reviewer to encourage the sharing of richly-annotated metadata.
Verify that analyses are not missing and that, where possible, analysis entries include software commands (e.g. the contents of a PAUP block or MrBayes block) so that analyses can be replicated easily (e.g. commands that describe substitution models, data partitions, and heuristic search parameters).
Verify that taxon labels are mapped against TreeBASE's taxonomic dictionary. Data in TreeBASE can only be found using a taxon name search if the taxon labels are properly mapped.

By clicking the 'OK' button below, you agree to keep these data confidential; you agree not to retain these data after completing your report to the journal editor; you agree not to use these data or knowledge of these data for the purposes of your research until and unless the paper under review has been published and the data have been made available to the general public; you agree to keep the URL confidential.

Citation title: "Cadophora species associated with wood-decay of grapevine in North America".

Study name: "Cadophora species associated with wood-decay of grapevine in North America".

This study is part of submission 16293 (Status: Published).

Matrices

Title: Cadophora Concatenation

Rows

Taxon Label	Row Segments	Characters 1?–30
Cadophora finlandica aurim603	(none)	CAAGA---------------------TCGC
Cadophora orientamericana CTC1	(none)	GGAAGGATCATAAATAAA--------CCTA
Cadophora orientamericana CTC2	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana CTC4	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana CTC5	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana MAC2	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana MDC1	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana NHC1	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana NHC2	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana NHC3	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana NYC3	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana NYC6	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana NYC9	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana NYC11	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana NYC12	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana VAC1	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana VTC1	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora orientamericana OHC1	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora spadicis RIC1	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora melinii	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora spadicis RIC3	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora spadicis QCC1	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora fastigiata A168_CBS268_33_type	(none)	-------------ATAAA--------CCTA
Cadophora melinii A164_type	(none)	-------------ATAAA--------CCTA
Cadophora melinii U11	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora melinii ONC1	(none)	GGAAGGATCATTAATAAA--------CCTA
Cadophora novi-eboraci CBS_101_359	(none)	GGAAGGATCATTAACAAA--------CCTA
Cadophora novi-eboraci NYC2	(none)	GGAAGGATCATTAATAAA--------CCTC
Cadophora novi-eboraci NYC1	(none)	GGAAGGATCATTAATAAA--------CCTC
Cadophora novi-eboraci NYC13	(none)	GGAAGGATCATTAATAAA--------CCTC
Cadophora novi-eboraci NYC14	(none)	GGAAGGATCATTAATAAA--------CCTC
Cadophora malorum A167	(none)	AGAAGCTTGCTTCGTGG-------------
Cadophora luteo-olivacea A175	(none)	AGAAGCTTGCTTCGTGGCGGGGCTACCCTA
Cadophora luteo-olivacea A19	(none)	AGAAGCTTGCTTCGTGGCGGGGCTACCCTA
Cadophora luteo-olivacea A41	(none)	AGAAGCTTGCTTCGTGGCGGGGCTACCCTA
Cadophora luteo-olivacea A42	(none)	AGAAGCTTGCTTCGTGGCGGGGCTACCCTA
Cadophora luteo-olivacea U5	(none)	AGAAGCTTGCTTCGTGGCGGGGCTACCCTA
Cadophora luteo-olivacea U8	(none)	AGAAGCTTGCTTCGTGGCGGGGCTACCCTA
Cadophora luteo-olivacea U17	(none)	AGAAGCTTGCTTCGTGGCGGGGCTACCCTA
Cadophora luteo-olivacea U7	(none)	AGAAGCTTGCTTCGTGGCGGGGCTACCCTA
Cadophora luteo-olivacea U21	(none)	AGAAGCTTGCTTCGTGGCGGGGCTACCCTA
Cadophora luteo-olivacea U22	(none)	AG--GCTTGCTTCGTGGCGGGGCTACCCTA
Cadophora luteo-olivacea U53	(none)	AGAAGCTTGCTTCGTGGCGGGGCTACCCTA
Cadophora luteo-olivacea U56	(none)	AGAAGCTTGCTTCGTGGCGGGGCTACCCTA

Columns

None of the columns has a description.