@ARTICLE{TreeBASE2Ref28221,
author = {Guillaume BILLET and J?r?mie Bardin},
title = {Serial Homology and Correlated Characters in Morphological Phylogenetics: Modeling the Evolution of Dental Crests in Placentals},
year = {2018},
keywords = {Morphological integration; phylogeny; morphology; paleontology; models; rates; categorical characters},
doi = {},
url = {http://},
pmid = {},
journal = {Systematic Biology},
volume = {},
number = {},
pages = {},
abstract = {Relevant modeling of the complexity of morphological evolution is crucial for morphological phylogenetics and for performing tests on a wide variety of evolutionary scenarios. It faces however many challenges, not the least of which is morphological integration and the problem of correlated categorical characters. In particular, the magnitude and implications of correlations among serially homologous structures such as teeth have been much debated but were never tested statistically within a broad phylogenetic context. Here, we present a large-scale empirical study analyzing the serial variation of cingular crests on successive molars (M1, M2 and M3) of 274 placental species in a phylogenetic context. Both likelihood analyses and analyses of phylogenetic co-distributions demonstrated highly correlated evolution in the entire sample and thus the non-independence of these serial features at a macroevolutionary scale. Likelihood analyses show that their serial variation should be better scored within a single composite character model with constrained paths for transitions enabling simultaneous changes on all three molars. These results are in good agreement with current molecular and developmental knowledge related to dental morphological variation and call into question the frequent use in phylogenetic analyses of separate characters scored on serially homologous structures of the dentition. Overall, they provide long-overdue and clear empirical evidence that in-depth studies of patterns of integration constitute an essential step towards more realistic character construction and modeling, and are thus critical to morphological phylogenetics. }
}
Matrix 45017 of Study 22395
Citation title:
"Serial Homology and Correlated Characters in Morphological Phylogenetics: Modeling the Evolution of Dental Crests in Placentals".
Study name:
"Serial Homology and Correlated Characters in Morphological Phylogenetics: Modeling the Evolution of Dental Crests in Placentals".
This study is part of submission 22395
(Status: Published).
Matrices
Title: Cingulum on Molars in Placentalia
Rows
Taxon Label |
Row Segments |
Characters 1?–30 |
Zalambdalestes |
(none)
|
000000 |
Maelestes |
(none)
|
111111 |
Prokennalestes |
(none)
|
000000 |
Kennalestes |
(none)
|
111111 |
Protungulatum |
(none)
|
111111 |
Didolodus |
(none)
|
111111 |
Tiuclaenus |
(none)
|
111111 |
Leptictis |
(none)
|
111111 |
Pleuraspidotherium |
(none)
|
111000 |
Arctocyon |
(none)
|
111111 |
Phenacodus |
(none)
|
111111 |
Ocepeia |
(none)
|
111111 |
Altacreodus |
(none)
|
111111 |
Didelphodus |
(none)
|
000000 |
Puercolestes |
(none)
|
111110 |
Maiorana |
(none)
|
111111 |
Pararyctes |
(none)
|
111111 |
Simpsonotus |
(none)
|
111111 |
Notostylops |
(none)
|
111111 |
Isotemnus |
(none)
|
111111 |
Oldfieldthomasia |
(none)
|
111111 |
Ultrapithecus |
(none)
|
111111 |
Notopithecus |
(none)
|
111111 |
Henricosbornia |
(none)
|
111111 |
Colbertia |
(none)
|
111111 |
Trigonostylops |
(none)
|
111111 |
Miguelsoria |
(none)
|
111111 |
Diadiaphorus |
(none)
|
111111 |
Proterotherium |
(none)
|
111111 |
Asmithswoodwardia |
(none)
|
111111 |
Pronycticebus |
(none)
|
111111 |
Magnadapis |
(none)
|
111111 |
Megaladapis |
(none)
|
111111 |
Hapalemur griseus 3354 |
(none)
|
000111 |
Hapalemur griseus 3356 |
(none)
|
111111 |
Lemur catta |
(none)
|
110100 |
Eulemur mongoz |
(none)
|
111110 |
Varecia |
(none)
|
110111 |
Eulemur fulvus |
(none)
|
110110 |
Eulemur macaco |
(none)
|
110100 |
Prolemur |
(none)
|
000111 |
Lepilemur |
(none)
|
000111 |
Indri |
(none)
|
000111 |
Propithecus coquereli |
(none)
|
000111 |
Propithecus verreauxi |
(none)
|
000111 |
Avahi |
(none)
|
000111 |
Phaner |
(none)
|
000111 |
Nycticebus coucang 719 |
(none)
|
000110 |
Nycticebus coucang 54 |
(none)
|
000111 |
Perodicticus |
(none)
|
000111 |
Galago |
(none)
|
000110 |
Otolemur |
(none)
|
000110 |
Loris |
(none)
|
000111 |
Tarsius |
(none)
|
111111 |
Ateles belzebuth |
(none)
|
000111 |
Ateles paniscus |
(none)
|
000111 |
Lagothrix |
(none)
|
000111 |
Callicebus |
(none)
|
111111 |
Pithecia |
(none)
|
111111 |
Cebus olivaceus |
(none)
|
000111 |
Cebus apella |
(none)
|
000111 |
Saimiri |
(none)
|
110111 |
Aotus |
(none)
|
000111 |
Alouatta |
(none)
|
000111 |
Colobus |
(none)
|
111111 |
Pliocolobus |
(none)
|
111111 |
Procolobus |
(none)
|
111111 |
Presbytis |
(none)
|
000111 |
Pygathris |
(none)
|
000111 |
Rhinopithecus |
(none)
|
000111 |
Trachypithecus auratus 306 |
(none)
|
011111 |
Trachypithecus auratus 961 |
(none)
|
011111 |
Nasalis |
(none)
|
000111 |
Cercopithecus alboangularis |
(none)
|
000111 |
Cercopithecus ascanius |
(none)
|
000111 |
Cercopithecus cephus 1808 |
(none)
|
000111 |
Cercopithecus cephus 434 |
(none)
|
010111 |
Cercopithecus nictitans |
(none)
|
000111 |
Chlorocebus |
(none)
|
011111 |
Cercocebus |
(none)
|
111111 |
Erythrocebus |
(none)
|
111111 |
Macaca fascicularis |
(none)
|
111111 |
Macaca sylvanus |
(none)
|
111111 |
Mandrillus |
(none)
|
111111 |
Papio cynocephalus |
(none)
|
111111 |
Papio anubis |
(none)
|
111111 |
Theropithecus |
(none)
|
111111 |
Gorilla |
(none)
|
100111 |
Pan troglodytes 445 |
(none)
|
111111 |
Pan troglodytes 227 |
(none)
|
000111 |
Hylobates |
(none)
|
111111 |
Pongo |
(none)
|
000111 |
Homo |
(none)
|
000111 |
Allocebus |
(none)
|
111111 |
Cheirogalus |
(none)
|
111111 |
Microcebus |
(none)
|
110111 |
Nomascus |
(none)
|
111111 |
Cynocephalus |
(none)
|
000000 |
Galeopterus |
(none)
|
000000 |
Tupaia tana |
(none)
|
000110 |
Tupaia glis |
(none)
|
000100 |
Esthonyx |
(none)
|
111111 |
Alcidedorbignya |
(none)
|
111111 |
Pantolambda |
(none)
|
111111 |
Coryphodon |
(none)
|
111001 |
Bemalambda |
(none)
|
111111 |
Rhinopoma |
(none)
|
000110 |
Saccolaimus |
(none)
|
000110 |
Taphozous |
(none)
|
000110 |
Emballonura |
(none)
|
000111 |
Pteropteryx |
(none)
|
000110 |
Coleura |
(none)
|
000110 |
Nycteris |
(none)
|
000110 |
Megaderma |
(none)
|
111110 |
Lavia |
(none)
|
111111 |
Asellia |
(none)
|
000110 |
Hipposideros |
(none)
|
000110 |
Triaenops |
(none)
|
000110 |
Rhinolopus euryale |
(none)
|
110110 |
Rhinolophus ferrumequinum |
(none)
|
111111 |
Noctilio |
(none)
|
000110 |
Mormoops |
(none)
|
000110 |
Anoura |
(none)
|
000000 |
Carollia |
(none)
|
000000 |
Choeroniscus |
(none)
|
000000 |
Glossophaga |
(none)
|
000000 |
Micronycteris |
(none)
|
000110 |
Mimon |
(none)
|
000110 |
Phyllostomus |
(none)
|
000110 |
Platyrrhinus |
(none)
|
000110 |
Sturnira |
(none)
|
000000 |
Tonatia |
(none)
|
000110 |
Trachops |
(none)
|
000110 |
Vampyrum |
(none)
|
000110 |
Barbastella |
(none)
|
111111 |
Chalinolobus |
(none)
|
111111 |
Eptesicus |
(none)
|
111111 |
Murina |
(none)
|
111111 |
Glischropus |
(none)
|
111111 |
Kerivoula |
(none)
|
111111 |
Lasiurus |
(none)
|
111111 |
Miniopterus |
(none)
|
111111 |
Myotis |
(none)
|
111111 |
Nyctalus |
(none)
|
111111 |
Pipistrellus |
(none)
|
111111 |
Otonycteris |
(none)
|
010110 |
Plecotus |
(none)
|
111111 |
Scotophilus |
(none)
|
000110 |
Rhogeessa |
(none)
|
111111 |
Molossus |
(none)
|
111110 |
Mops |
(none)
|
000110 |
Chaerophon |
(none)
|
000110 |
Echinosorex |
(none)
|
111111 |
Neurogymnurus |
(none)
|
111110 |
Leptacodon |
(none)
|
111111 |
Hylomys |
(none)
|
111111 |
Paraechinus |
(none)
|
111110 |
Atelerix albiventris |
(none)
|
000110 |
Atelerix algirus |
(none)
|
111110 |
Erinaceus |
(none)
|
111110 |
Solenodon paradoxus 341 |
(none)
|
000111 |
Solenodon paradoxus 156 |
(none)
|
000110 |
Crocidura |
(none)
|
000110 |
Paracrocidura |
(none)
|
000110 |
Sylvisorex |
(none)
|
000110 |
Myosorex |
(none)
|
000110 |
Anourosorex |
(none)
|
000110 |
Suncus |
(none)
|
000110 |
Blarina |
(none)
|
000110 |
Nectogale |
(none)
|
000110 |
Neomys |
(none)
|
100110 |
Sorex |
(none)
|
000110 |
Galemys |
(none)
|
000000 |
Desmana |
(none)
|
000000 |
Scalopus |
(none)
|
000000 |
Euroscaptor |
(none)
|
111000 |
Talpa |
(none)
|
000000 |
Eozygodon |
(none)
|
111111 |
Eritherium |
(none)
|
111111 |
Phosphatherium |
(none)
|
111111 |
Potamogale |
(none)
|
000000 |
Tenrec |
(none)
|
000000 |
Setifer |
(none)
|
000000 |
Hemicentetes |
(none)
|
000000 |
Oryzorictes |
(none)
|
000000 |
Microgale dobsoni 2507 |
(none)
|
000000 |
Microgale dobsoni 2493 |
(none)
|
000000 |
Limnogale |
(none)
|
000000 |
Echinops |
(none)
|
000000 |
Geogale |
(none)
|
000000 |
Micropotamogale |
(none)
|
000000 |
Acotherulum |
(none)
|
111100 |
Dichobune |
(none)
|
111111 |
Metriotherium |
(none)
|
111111 |
Diacodexis |
(none)
|
111111 |
Doliochoerus |
(none)
|
111111 |
Cebochoerus |
(none)
|
111111 |
Cainotherium |
(none)
|
111111 |
Dacrytherium |
(none)
|
111000 |
Anoplotherium |
(none)
|
111000 |
Vigugna |
(none)
|
000000 |
Lama |
(none)
|
000000 |
Camelus bactrianus |
(none)
|
000000 |
Camelus dromedarius |
(none)
|
000000 |
Tayassu |
(none)
|
111011 |
Babyrousa |
(none)
|
111111 |
Hylochoerus |
(none)
|
111001 |
Pecari |
(none)
|
111001 |
Potamochoerus |
(none)
|
111111 |
Sus |
(none)
|
111111 |
Cervus elaphus |
(none)
|
011001 |
Muntiacus muntjac |
(none)
|
111111 |
Muntiacus sp |
(none)
|
101000 |
Axis |
(none)
|
111111 |
Odocoileus hemonius |
(none)
|
000000 |
Odocoileus virginianus |
(none)
|
111111 |
Cervus nippon |
(none)
|
000000 |
Rucervus |
(none)
|
111011 |
Elaphurus |
(none)
|
000000 |
Rangifer tarandus 85.1 |
(none)
|
010000 |
Rangifer tarandus 85.2 |
(none)
|
000000 |
Alces |
(none)
|
110000 |
Hydropotes |
(none)
|
000000 |
Blastocerus |
(none)
|
000000 |
Elaphodus |
(none)
|
000000 |
Moschus |
(none)
|
000000 |
Tragulus javanicus |
(none)
|
000000 |
Tragulus napu |
(none)
|
000000 |
Moschiola |
(none)
|
000000 |
Hyemoschus |
(none)
|
110111 |
Rusa timorensis |
(none)
|
001111 |
Rusa unicolor 543 |
(none)
|
111111 |
Rusa unicolor 46 |
(none)
|
111111 |
Pudu |
(none)
|
000000 |
Dama dama |
(none)
|
111111 |
Dama mesopotomica |
(none)
|
000000 |
Mazama gouazoubira 796 |
(none)
|
011111 |
Mazama gouazoubira 687 |
(none)
|
000000 |
Mazama americana 135 |
(none)
|
000000 |
Mazama americana I2233 |
(none)
|
000000 |
Hippocamelus |
(none)
|
000000 |
Capreolus |
(none)
|
000000 |
Litocranius |
(none)
|
000000 |
Tragelaphus |
(none)
|
000000 |
Sylvicapra |
(none)
|
000000 |
Cephalophus |
(none)
|
000000 |
Giraffa |
(none)
|
000000 |
Okapia |
(none)
|
000000 |
Choeropsis |
(none)
|
111111 |
Hippopotamus |
(none)
|
111111 |
Miacis |
(none)
|
110110 |
Vulpavus |
(none)
|
110110 |
Lycophocyon |
(none)
|
100110 |
Dormaalocyon |
(none)
|
110110 |
Paramys |
(none)
|
111111 |
Paradelomys |
(none)
|
111111 |
Adelomys |
(none)
|
111111 |
Theridomys |
(none)
|
111111 |
Tuscahomys |
(none)
|
111111 |
Sciuravus |
(none)
|
111111 |
Cocomys |
(none)
|
111111 |
Pappocricetodon |
(none)
|
111111 |
Spermophilus fulvus |
(none)
|
111111 |
Spermophilus citellus |
(none)
|
111001 |
Callospermophilus lateralis |
(none)
|
111111 |
Rhombomylus |
(none)
|
000111 |
Matutinia |
(none)
|
000111 |
Gomphos |
(none)
|
000111 |
Allopterodon |
(none)
|
000000 |
Anisodon |
(none)
|
111111 |
Hyracotherium |
(none)
|
111111 |
Palaeotherium |
(none)
|
111111 |
Pachynolophus |
(none)
|
111111 |
Diceros |
(none)
|
111110 |
Rhinoceros sondaicus |
(none)
|
111110 |
Rhinoceros unicornis |
(none)
|
111110 |
Tapirus terrestris |
(none)
|
111111 |
Tapirus pinchaque |
(none)
|
111111 |
Tapirus indicus |
(none)
|
111111 |
Pachyhyrax |
(none)
|
111111 |
Procavia |
(none)
|
111111 |
Dendrohyrax |
(none)
|
111111 |
Heterohyrax |
(none)
|
111111 |
Chrysochloris |
(none)
|
000000 |
Calcochloris leucorhinus 103 |
(none)
|
000000 |
Calcochloris leucorhinus 1331 |
(none)
|
000000 |
Columns
Column |
Character Description |
1
|
M1 anterior cingulum
|
2
|
M2 anterior cingulum
|
3
|
M3 anterior cingulum
|
4
|
M1 posterior cingulum
|
5
|
M2 posterior cingulum
|
6
|
M3 posterior cingulum
|